data_5WI6
#
_model_server_result.job_id            s6e2DFX3iNzNsB1yxOlafg 
_model_server_result.datetime_utc      '2024-11-29 18:05:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wi6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    5WI6 
#
_exptl.entry_id    5WI6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.862 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5WI6 
_cell.length_a            96.743 
_cell.length_b            96.743 
_cell.length_c            238.553 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WI6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 K N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf2 A SG CYS 88 A CYS 99 1_555 D SG CYS 88 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 A SG CYS 125 A CYS 136 1_555 A SG CYS 200 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 A SG CYS 158 A CYS 168 1_555 A SG CYS 181 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 A SG CYS 190 A CYS 191 1_555 A SG CYS 218 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 B SG CYS 29 B CYS 42 1_555 B SG CYS 45 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf7 B SG CYS 88 B CYS 99 1_555 C SG CYS 88 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 B SG CYS 125 B CYS 136 1_555 B SG CYS 200 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf9 B SG CYS 158 B CYS 168 1_555 B SG CYS 181 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf10 B SG CYS 190 B CYS 191 1_555 B SG CYS 218 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf11 C SG CYS 29 C CYS 42 1_555 C SG CYS 45 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf12 C SG CYS 125 C CYS 136 1_555 C SG CYS 200 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf13 C SG CYS 158 C CYS 168 1_555 C SG CYS 181 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf14 C SG CYS 190 C CYS 191 1_555 C SG CYS 218 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf15 D SG CYS 29 D CYS 42 1_555 D SG CYS 45 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf16 D SG CYS 125 D CYS 136 1_555 D SG CYS 200 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf17 D SG CYS 158 D CYS 168 1_555 D SG CYS 181 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf18 D SG CYS 190 D CYS 191 1_555 D SG CYS 218 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
covale ? covale1 A NE2 HIS 44 A HIS 57 1_555 F C3 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 A OG SER 194 A SER 195 1_555 F C2 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? 
covale ? covale3 B NE2 HIS 44 B HIS 57 1_555 H C3 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale4 B OG SER 194 B SER 195 1_555 H C2 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? 
covale ? covale5 C NE2 HIS 44 C HIS 57 1_555 K C3 0GJ . C 0GJ 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
covale ? covale6 C OG SER 194 C SER 195 1_555 K C2 0GJ . C 0GJ 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale7 D NE2 HIS 44 D HIS 57 1_555 O C3 0GJ . D 0GJ 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale8 D OG SER 194 D SER 195 1_555 O C2 0GJ . D 0GJ 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
#
_chem_comp.formula           'C14 H28 Cl N6 O5 1' 
_chem_comp.formula_weight    395.862 
_chem_comp.id                0GJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA 0GJ sing 1 n n 
N H 0GJ sing 2 n n 
N H2 0GJ sing 3 n n 
CA C 0GJ sing 4 n n 
CA CB 0GJ sing 5 n n 
CA HA 0GJ sing 6 n n 
C O 0GJ doub 7 n n 
C N1 0GJ sing 8 n n 
CB CG 0GJ sing 9 n n 
CB HB2 0GJ sing 10 n n 
CB HB3 0GJ sing 11 n n 
CG CD 0GJ sing 12 n n 
CG HG2 0GJ sing 13 n n 
CG HG3 0GJ sing 14 n n 
CD OE1 0GJ doub 15 n n 
CD OE2 0GJ sing 16 n n 
OE2 HE2 0GJ sing 17 n n 
N1 CA1 0GJ sing 18 n n 
N1 H1 0GJ sing 19 n n 
CA1 C1 0GJ sing 20 n n 
CA1 HA2 0GJ sing 21 n n 
CA1 HA3 0GJ sing 22 n n 
C1 O1 0GJ doub 23 n n 
C1 N2 0GJ sing 24 n n 
N2 CA2 0GJ sing 25 n n 
N2 H3 0GJ sing 26 n n 
CA2 C2 0GJ sing 27 n n 
CA2 CB1 0GJ sing 28 n n 
CA2 HA1 0GJ sing 29 n n 
C2 O2 0GJ sing 30 n n 
C2 C3 0GJ sing 31 n n 
CB1 CG1 0GJ sing 32 n n 
CB1 HB21 0GJ sing 33 n n 
CB1 HB31 0GJ sing 34 n n 
CG1 CD1 0GJ sing 35 n n 
CG1 HG21 0GJ sing 36 n n 
CG1 HG31 0GJ sing 37 n n 
CD1 NE 0GJ sing 38 n n 
CD1 HD2 0GJ sing 39 n n 
CD1 HD3 0GJ sing 40 n n 
NE CZ 0GJ sing 41 n n 
NE HE 0GJ sing 42 n n 
CZ NH1 0GJ sing 43 n n 
CZ NH2 0GJ doub 44 n n 
NH1 HH11 0GJ sing 45 n n 
NH1 HH12 0GJ sing 46 n n 
NH2 HH21 0GJ sing 47 n n 
NH2 HH22 0GJ sing 48 n n 
C3 H11 0GJ sing 49 n n 
C3 H21 0GJ sing 50 n n 
CL C3 0GJ sing 51 n n 
C2 H27 0GJ sing 52 n n 
O2 H28 0GJ sing 53 n n 
#
_atom_sites.entry_id                     5WI6 
_atom_sites.fract_transf_matrix[1][1]    0.010337 
_atom_sites.fract_transf_matrix[1][2]    0.005968 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011936 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 301 5 SO4 SO4 . 
F 3 0GJ A 1 302 1 0GJ 0GJ . 
G 2 SO4 B 1 301 4 SO4 SO4 . 
H 3 0GJ B 1 302 1 0GJ 0GJ . 
I 2 SO4 C 1 301 6 SO4 SO4 . 
J 2 SO4 C 1 302 7 SO4 SO4 . 
K 3 0GJ C 1 303 1 0GJ 0GJ . 
L 2 SO4 D 1 301 1 SO4 SO4 . 
M 2 SO4 D 1 302 2 SO4 SO4 . 
N 2 SO4 D 1 303 3 SO4 SO4 . 
O 3 0GJ D 1 304 1 0GJ 0GJ . 
P 4 HOH A 1 401 36 HOH HOH . 
P 4 HOH A 2 402 2 HOH HOH . 
P 4 HOH A 3 403 41 HOH HOH . 
P 4 HOH A 4 404 40 HOH HOH . 
P 4 HOH A 5 405 9 HOH HOH . 
P 4 HOH A 6 406 11 HOH HOH . 
P 4 HOH A 7 407 28 HOH HOH . 
P 4 HOH A 8 408 30 HOH HOH . 
P 4 HOH A 9 409 20 HOH HOH . 
Q 4 HOH B 1 401 8 HOH HOH . 
Q 4 HOH B 2 402 6 HOH HOH . 
Q 4 HOH B 3 403 18 HOH HOH . 
Q 4 HOH B 4 404 15 HOH HOH . 
R 4 HOH C 1 401 42 HOH HOH . 
R 4 HOH C 2 402 17 HOH HOH . 
R 4 HOH C 3 403 5 HOH HOH . 
R 4 HOH C 4 404 24 HOH HOH . 
S 4 HOH D 1 401 10 HOH HOH . 
S 4 HOH D 2 402 39 HOH HOH . 
S 4 HOH D 3 403 21 HOH HOH . 
S 4 HOH D 4 404 7 HOH HOH . 
S 4 HOH D 5 405 29 HOH HOH . 
S 4 HOH D 6 406 25 HOH HOH . 
S 4 HOH D 7 407 31 HOH HOH . 
S 4 HOH D 8 408 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 0GJ . . . H 3 30.207 8.336 -56.986 1 86.88 ? N 0GJ 302 B 1 
HETATM 2 C CA 0GJ . . . H 3 28.874 8.306 -56.491 1 85.69 ? CA 0GJ 302 B 1 
HETATM 3 C C 0GJ . . . H 3 27.974 9.363 -57.166 1 79.33 ? C 0GJ 302 B 1 
HETATM 4 O O 0GJ . . . H 3 28.329 10.535 -57.275 1 76.64 ? O 0GJ 302 B 1 
HETATM 5 C CB 0GJ . . . H 3 28.867 8.489 -54.986 1 90.76 ? CB 0GJ 302 B 1 
HETATM 6 C CG 0GJ . . . H 3 27.473 8.362 -54.355 1 96.31 ? CG 0GJ 302 B 1 
HETATM 7 C CD 0GJ . . . H 3 27.398 8.688 -52.886 1 100.7 ? CD 0GJ 302 B 1 
HETATM 8 O OE1 0GJ . . . H 3 27.783 9.818 -52.454 1 101.77 ? OE1 0GJ 302 B 1 
HETATM 9 O OE2 0GJ . . . H 3 26.934 7.83 -52.088 1 101.61 ? OE2 0GJ 302 B 1 
HETATM 10 N N1 0GJ . . . H 3 26.654 8.952 -57.632 1 74.91 ? N1 0GJ 302 B 1 
HETATM 11 C CA1 0GJ . . . H 3 25.741 9.929 -58.245 1 70.02 ? CA1 0GJ 302 B 1 
HETATM 12 C C1 0GJ . . . H 3 25.335 11.152 -57.371 1 66.44 ? C1 0GJ 302 B 1 
HETATM 13 O O1 0GJ . . . H 3 25.45 11.124 -56.161 1 65.67 ? O1 0GJ 302 B 1 
HETATM 14 N N2 0GJ . . . H 3 24.856 12.341 -57.988 1 65.68 ? N2 0GJ 302 B 1 
HETATM 15 C CA2 0GJ . . . H 3 24.434 13.437 -57.149 1 65.06 ? CA2 0GJ 302 B 1 
HETATM 16 C C2 0GJ . . . H 3 22.904 13.657 -57.343 1 61.18 ? C2 0GJ 302 B 1 
HETATM 17 O O2 0GJ . . . H 3 22.305 14.439 -56.201 1 60.97 ? O2 0GJ 302 B 1 
HETATM 18 C CB1 0GJ . . . H 3 25.302 14.672 -57.293 1 64.63 ? CB1 0GJ 302 B 1 
HETATM 19 C CG1 0GJ . . . H 3 26.694 14.466 -57.807 1 62.52 ? CG1 0GJ 302 B 1 
HETATM 20 C CD1 0GJ . . . H 3 27.814 14.906 -56.853 1 62.94 ? CD1 0GJ 302 B 1 
HETATM 21 N NE 0GJ . . . H 3 28.533 15.997 -57.479 1 64.03 ? NE 0GJ 302 B 1 
HETATM 22 C CZ 0GJ . . . H 3 29.962 16.158 -57.578 1 61.75 ? CZ 0GJ 302 B 1 
HETATM 23 N NH1 0GJ . . . H 3 30.817 15.326 -57.09 1 59.05 ? NH1 0GJ 302 B 1 
HETATM 24 N NH2 0GJ . . . H 3 30.4 17.198 -58.161 1 62.25 ? NH2 0GJ 302 B 1 
HETATM 25 C C3 0GJ . . . H 3 22.07 12.347 -57.684 1 56.32 ? C3 0GJ 302 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#