data_5WI6 # _model_server_result.job_id zB92PVpppUfyklBhhWNH8A _model_server_result.datetime_utc '2024-11-08 21:44:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":302}' # _entry.id 5WI6 # _exptl.entry_id 5WI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WI6 _cell.length_a 96.743 _cell.length_b 96.743 _cell.length_c 238.553 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 88 A CYS 99 1_555 D SG CYS 88 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 125 A CYS 136 1_555 A SG CYS 200 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 158 A CYS 168 1_555 A SG CYS 181 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 A SG CYS 190 A CYS 191 1_555 A SG CYS 218 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 B SG CYS 29 B CYS 42 1_555 B SG CYS 45 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 B SG CYS 88 B CYS 99 1_555 C SG CYS 88 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 125 B CYS 136 1_555 B SG CYS 200 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 B SG CYS 158 B CYS 168 1_555 B SG CYS 181 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 B SG CYS 190 B CYS 191 1_555 B SG CYS 218 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf11 C SG CYS 29 C CYS 42 1_555 C SG CYS 45 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 C SG CYS 125 C CYS 136 1_555 C SG CYS 200 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf13 C SG CYS 158 C CYS 168 1_555 C SG CYS 181 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf14 C SG CYS 190 C CYS 191 1_555 C SG CYS 218 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 D SG CYS 29 D CYS 42 1_555 D SG CYS 45 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf16 D SG CYS 125 D CYS 136 1_555 D SG CYS 200 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf17 D SG CYS 158 D CYS 168 1_555 D SG CYS 181 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf18 D SG CYS 190 D CYS 191 1_555 D SG CYS 218 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? covale ? covale1 A NE2 HIS 44 A HIS 57 1_555 F C3 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A OG SER 194 A SER 195 1_555 F C2 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale3 B NE2 HIS 44 B HIS 57 1_555 H C3 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 B OG SER 194 B SER 195 1_555 H C2 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale5 C NE2 HIS 44 C HIS 57 1_555 K C3 0GJ . C 0GJ 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale6 C OG SER 194 C SER 195 1_555 K C2 0GJ . C 0GJ 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 D NE2 HIS 44 D HIS 57 1_555 O C3 0GJ . D 0GJ 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale8 D OG SER 194 D SER 195 1_555 O C2 0GJ . D 0GJ 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 343 n n S O2 SO4 doub 344 n n S O3 SO4 sing 345 n n S O4 SO4 sing 346 n n # _atom_sites.entry_id 5WI6 _atom_sites.fract_transf_matrix[1][1] 0.010337 _atom_sites.fract_transf_matrix[1][2] 0.005968 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 301 5 SO4 SO4 . F 3 0GJ A 1 302 1 0GJ 0GJ . G 2 SO4 B 1 301 4 SO4 SO4 . H 3 0GJ B 1 302 1 0GJ 0GJ . I 2 SO4 C 1 301 6 SO4 SO4 . J 2 SO4 C 1 302 7 SO4 SO4 . K 3 0GJ C 1 303 1 0GJ 0GJ . L 2 SO4 D 1 301 1 SO4 SO4 . M 2 SO4 D 1 302 2 SO4 SO4 . N 2 SO4 D 1 303 3 SO4 SO4 . O 3 0GJ D 1 304 1 0GJ 0GJ . P 4 HOH A 1 401 36 HOH HOH . P 4 HOH A 2 402 2 HOH HOH . P 4 HOH A 3 403 41 HOH HOH . P 4 HOH A 4 404 40 HOH HOH . P 4 HOH A 5 405 9 HOH HOH . P 4 HOH A 6 406 11 HOH HOH . P 4 HOH A 7 407 28 HOH HOH . P 4 HOH A 8 408 30 HOH HOH . P 4 HOH A 9 409 20 HOH HOH . Q 4 HOH B 1 401 8 HOH HOH . Q 4 HOH B 2 402 6 HOH HOH . Q 4 HOH B 3 403 18 HOH HOH . Q 4 HOH B 4 404 15 HOH HOH . R 4 HOH C 1 401 42 HOH HOH . R 4 HOH C 2 402 17 HOH HOH . R 4 HOH C 3 403 5 HOH HOH . R 4 HOH C 4 404 24 HOH HOH . S 4 HOH D 1 401 10 HOH HOH . S 4 HOH D 2 402 39 HOH HOH . S 4 HOH D 3 403 21 HOH HOH . S 4 HOH D 4 404 7 HOH HOH . S 4 HOH D 5 405 29 HOH HOH . S 4 HOH D 6 406 25 HOH HOH . S 4 HOH D 7 407 31 HOH HOH . S 4 HOH D 8 408 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . M 2 32.677 -16.86 -23.224 1 134.16 ? S SO4 302 D 1 HETATM 2 O O1 SO4 . . . M 2 34.062 -16.723 -23.704 1 132.62 ? O1 SO4 302 D 1 HETATM 3 O O2 SO4 . . . M 2 31.834 -17.2 -24.356 1 135.02 ? O2 SO4 302 D 1 HETATM 4 O O3 SO4 . . . M 2 32.596 -17.892 -22.178 1 134.42 ? O3 SO4 302 D 1 HETATM 5 O O4 SO4 . . . M 2 32.177 -15.61 -22.682 1 133.44 ? O4 SO4 302 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #