data_5WI6 # _model_server_result.job_id zqc4c6EGzH_2pH_41JWbbw _model_server_result.datetime_utc '2024-11-26 06:47:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":304}' # _entry.id 5WI6 # _exptl.entry_id 5WI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.862 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WI6 _cell.length_a 96.743 _cell.length_b 96.743 _cell.length_c 238.553 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 K N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 88 A CYS 99 1_555 D SG CYS 88 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 125 A CYS 136 1_555 A SG CYS 200 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 158 A CYS 168 1_555 A SG CYS 181 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 A SG CYS 190 A CYS 191 1_555 A SG CYS 218 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 B SG CYS 29 B CYS 42 1_555 B SG CYS 45 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 B SG CYS 88 B CYS 99 1_555 C SG CYS 88 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 125 B CYS 136 1_555 B SG CYS 200 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 B SG CYS 158 B CYS 168 1_555 B SG CYS 181 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 B SG CYS 190 B CYS 191 1_555 B SG CYS 218 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf11 C SG CYS 29 C CYS 42 1_555 C SG CYS 45 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 C SG CYS 125 C CYS 136 1_555 C SG CYS 200 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf13 C SG CYS 158 C CYS 168 1_555 C SG CYS 181 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf14 C SG CYS 190 C CYS 191 1_555 C SG CYS 218 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 D SG CYS 29 D CYS 42 1_555 D SG CYS 45 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf16 D SG CYS 125 D CYS 136 1_555 D SG CYS 200 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf17 D SG CYS 158 D CYS 168 1_555 D SG CYS 181 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf18 D SG CYS 190 D CYS 191 1_555 D SG CYS 218 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? covale ? covale1 A NE2 HIS 44 A HIS 57 1_555 F C3 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A OG SER 194 A SER 195 1_555 F C2 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale3 B NE2 HIS 44 B HIS 57 1_555 H C3 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 B OG SER 194 B SER 195 1_555 H C2 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale5 C NE2 HIS 44 C HIS 57 1_555 K C3 0GJ . C 0GJ 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale6 C OG SER 194 C SER 195 1_555 K C2 0GJ . C 0GJ 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 D NE2 HIS 44 D HIS 57 1_555 O C3 0GJ . D 0GJ 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale8 D OG SER 194 D SER 195 1_555 O C2 0GJ . D 0GJ 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? # _chem_comp.formula 'C14 H28 Cl N6 O5 1' _chem_comp.formula_weight 395.862 _chem_comp.id 0GJ _chem_comp.mon_nstd_flag . _chem_comp.name L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0GJ sing 1 n n N H 0GJ sing 2 n n N H2 0GJ sing 3 n n CA C 0GJ sing 4 n n CA CB 0GJ sing 5 n n CA HA 0GJ sing 6 n n C O 0GJ doub 7 n n C N1 0GJ sing 8 n n CB CG 0GJ sing 9 n n CB HB2 0GJ sing 10 n n CB HB3 0GJ sing 11 n n CG CD 0GJ sing 12 n n CG HG2 0GJ sing 13 n n CG HG3 0GJ sing 14 n n CD OE1 0GJ doub 15 n n CD OE2 0GJ sing 16 n n OE2 HE2 0GJ sing 17 n n N1 CA1 0GJ sing 18 n n N1 H1 0GJ sing 19 n n CA1 C1 0GJ sing 20 n n CA1 HA2 0GJ sing 21 n n CA1 HA3 0GJ sing 22 n n C1 O1 0GJ doub 23 n n C1 N2 0GJ sing 24 n n N2 CA2 0GJ sing 25 n n N2 H3 0GJ sing 26 n n CA2 C2 0GJ sing 27 n n CA2 CB1 0GJ sing 28 n n CA2 HA1 0GJ sing 29 n n C2 O2 0GJ sing 30 n n C2 C3 0GJ sing 31 n n CB1 CG1 0GJ sing 32 n n CB1 HB21 0GJ sing 33 n n CB1 HB31 0GJ sing 34 n n CG1 CD1 0GJ sing 35 n n CG1 HG21 0GJ sing 36 n n CG1 HG31 0GJ sing 37 n n CD1 NE 0GJ sing 38 n n CD1 HD2 0GJ sing 39 n n CD1 HD3 0GJ sing 40 n n NE CZ 0GJ sing 41 n n NE HE 0GJ sing 42 n n CZ NH1 0GJ sing 43 n n CZ NH2 0GJ doub 44 n n NH1 HH11 0GJ sing 45 n n NH1 HH12 0GJ sing 46 n n NH2 HH21 0GJ sing 47 n n NH2 HH22 0GJ sing 48 n n C3 H11 0GJ sing 49 n n C3 H21 0GJ sing 50 n n CL C3 0GJ sing 51 n n C2 H27 0GJ sing 52 n n O2 H28 0GJ sing 53 n n # _atom_sites.entry_id 5WI6 _atom_sites.fract_transf_matrix[1][1] 0.010337 _atom_sites.fract_transf_matrix[1][2] 0.005968 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 301 5 SO4 SO4 . F 3 0GJ A 1 302 1 0GJ 0GJ . G 2 SO4 B 1 301 4 SO4 SO4 . H 3 0GJ B 1 302 1 0GJ 0GJ . I 2 SO4 C 1 301 6 SO4 SO4 . J 2 SO4 C 1 302 7 SO4 SO4 . K 3 0GJ C 1 303 1 0GJ 0GJ . L 2 SO4 D 1 301 1 SO4 SO4 . M 2 SO4 D 1 302 2 SO4 SO4 . N 2 SO4 D 1 303 3 SO4 SO4 . O 3 0GJ D 1 304 1 0GJ 0GJ . P 4 HOH A 1 401 36 HOH HOH . P 4 HOH A 2 402 2 HOH HOH . P 4 HOH A 3 403 41 HOH HOH . P 4 HOH A 4 404 40 HOH HOH . P 4 HOH A 5 405 9 HOH HOH . P 4 HOH A 6 406 11 HOH HOH . P 4 HOH A 7 407 28 HOH HOH . P 4 HOH A 8 408 30 HOH HOH . P 4 HOH A 9 409 20 HOH HOH . Q 4 HOH B 1 401 8 HOH HOH . Q 4 HOH B 2 402 6 HOH HOH . Q 4 HOH B 3 403 18 HOH HOH . Q 4 HOH B 4 404 15 HOH HOH . R 4 HOH C 1 401 42 HOH HOH . R 4 HOH C 2 402 17 HOH HOH . R 4 HOH C 3 403 5 HOH HOH . R 4 HOH C 4 404 24 HOH HOH . S 4 HOH D 1 401 10 HOH HOH . S 4 HOH D 2 402 39 HOH HOH . S 4 HOH D 3 403 21 HOH HOH . S 4 HOH D 4 404 7 HOH HOH . S 4 HOH D 5 405 29 HOH HOH . S 4 HOH D 6 406 25 HOH HOH . S 4 HOH D 7 407 31 HOH HOH . S 4 HOH D 8 408 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0GJ . . . O 3 22.043 12.518 -16.137 1 78.11 ? N 0GJ 304 D 1 HETATM 2 C CA 0GJ . . . O 3 21.746 11.56 -17.146 1 77.76 ? CA 0GJ 304 D 1 HETATM 3 C C 0GJ . . . O 3 21.864 10.134 -16.585 1 71.6 ? C 0GJ 304 D 1 HETATM 4 O O 0GJ . . . O 3 22.952 9.669 -16.255 1 68.85 ? O 0GJ 304 D 1 HETATM 5 C CB 0GJ . . . O 3 22.643 11.754 -18.349 1 83.35 ? CB 0GJ 304 D 1 HETATM 6 C CG 0GJ . . . O 3 22.068 11.188 -19.648 1 90.67 ? CG 0GJ 304 D 1 HETATM 7 C CD 0GJ . . . O 3 23.081 10.903 -20.741 1 98.87 ? CD 0GJ 304 D 1 HETATM 8 O OE1 0GJ . . . O 3 24.287 11.301 -20.661 1 101.22 ? OE1 0GJ 304 D 1 HETATM 9 O OE2 0GJ . . . O 3 22.721 10.256 -21.766 1 100.84 ? OE2 0GJ 304 D 1 HETATM 10 N N1 0GJ . . . O 3 20.641 9.358 -16.423 1 68.66 ? N1 0GJ 304 D 1 HETATM 11 C CA1 0GJ . . . O 3 20.68 7.977 -15.908 1 64.06 ? CA1 0GJ 304 D 1 HETATM 12 C C1 0GJ . . . O 3 21.502 6.978 -16.768 1 60.66 ? C1 0GJ 304 D 1 HETATM 13 O O1 0GJ . . . O 3 21.474 7.075 -17.987 1 60.83 ? O1 0GJ 304 D 1 HETATM 14 N N2 0GJ . . . O 3 22.297 5.955 -16.154 1 57.77 ? N2 0GJ 304 D 1 HETATM 15 C CA2 0GJ . . . O 3 23.003 5.045 -17.028 1 54.57 ? CA2 0GJ 304 D 1 HETATM 16 C C2 0GJ . . . O 3 22.345 3.641 -16.984 1 52.35 ? C2 0GJ 304 D 1 HETATM 17 O O2 0GJ . . . O 3 22.836 2.796 -18.142 1 53.8 ? O2 0GJ 304 D 1 HETATM 18 C CB1 0GJ . . . O 3 24.493 5.054 -16.81 1 51.98 ? CB1 0GJ 304 D 1 HETATM 19 C CG1 0GJ . . . O 3 25.085 5.828 -15.678 1 51.57 ? CG1 0GJ 304 D 1 HETATM 20 C CD1 0GJ . . . O 3 26.162 6.767 -16.229 1 54.41 ? CD1 0GJ 304 D 1 HETATM 21 N NE 0GJ . . . O 3 27.372 6.767 -15.436 1 56.73 ? NE 0GJ 304 D 1 HETATM 22 C CZ 0GJ . . . O 3 28.238 7.918 -15.437 1 59.29 ? CZ 0GJ 304 D 1 HETATM 23 N NH1 0GJ . . . O 3 27.939 8.959 -16.141 1 61.28 ? NH1 0GJ 304 D 1 HETATM 24 N NH2 0GJ . . . O 3 29.309 7.937 -14.74 1 57.88 ? NH2 0GJ 304 D 1 HETATM 25 C C3 0GJ . . . O 3 20.764 3.677 -16.998 1 48.4 ? C3 0GJ 304 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 25 #