data_5WI9 # _model_server_result.job_id AqPLhiYVxLVJ-1lDNW2oqg _model_server_result.datetime_utc '2024-11-24 02:13:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":607}' # _entry.id 5WI9 # _exptl.entry_id 5WI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.86 _cell.angle_gamma 90 _cell.entry_id 5WI9 _cell.length_a 118.018 _cell.length_b 68.465 _cell.length_c 147.811 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,K,L,M,N,O,T,U,V,X,Y 1 1 B,E,F,P,Q,R,S,W,Z,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 R N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 23 L CYS 23 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 C SG CYS 135 L CYS 135 1_555 C SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 D SG CYS 151 H CYS 151 1_555 D SG CYS 207 H CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 E SG CYS 23 E CYS 23 1_555 E SG CYS 89 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 E SG CYS 135 E CYS 135 1_555 E SG CYS 195 E CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 F SG CYS 151 F CYS 151 1_555 F SG CYS 207 F CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A ND2 ASN 160 A ASN 211 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale2 A ND2 ASN 340 A ASN 391 1_555 H C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 B ND2 ASN 160 B ASN 211 1_555 P C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale4 B ND2 ASN 340 B ASN 391 1_555 Q C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5WI9 _atom_sites.fract_transf_matrix[1][1] 0.008473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0034 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 601 1 NAG NAG . H 4 NAG A 1 602 2 NAG NAG . I 5 EDO A 1 603 2 EDO EDO . J 5 EDO A 1 604 4 EDO EDO . K 5 EDO A 1 605 5 EDO EDO . L 5 EDO A 1 606 8 EDO EDO . M 5 EDO A 1 607 11 EDO EDO . N 6 SO4 A 1 608 1 SO4 SO4 . O 7 PG4 A 1 609 1 PG4 PG4 . P 4 NAG B 1 601 3 NAG NAG . Q 4 NAG B 1 602 4 NAG NAG . R 5 EDO B 1 603 9 EDO EDO . S 6 SO4 B 1 604 2 SO4 SO4 . T 7 PG4 L 1 301 2 PG4 PG4 . U 5 EDO H 1 301 10 EDO EDO . V 8 HOH A 1 701 5 HOH HOH . V 8 HOH A 2 702 11 HOH HOH . V 8 HOH A 3 703 51 HOH HOH . V 8 HOH A 4 704 56 HOH HOH . V 8 HOH A 5 705 30 HOH HOH . V 8 HOH A 6 706 29 HOH HOH . V 8 HOH A 7 707 8 HOH HOH . V 8 HOH A 8 708 111 HOH HOH . V 8 HOH A 9 709 34 HOH HOH . V 8 HOH A 10 710 21 HOH HOH . V 8 HOH A 11 711 28 HOH HOH . V 8 HOH A 12 712 22 HOH HOH . V 8 HOH A 13 713 32 HOH HOH . V 8 HOH A 14 714 23 HOH HOH . V 8 HOH A 15 715 37 HOH HOH . V 8 HOH A 16 716 113 HOH HOH . V 8 HOH A 17 717 52 HOH HOH . V 8 HOH A 18 718 146 HOH HOH . V 8 HOH A 19 719 154 HOH HOH . V 8 HOH A 20 720 46 HOH HOH . V 8 HOH A 21 721 12 HOH HOH . V 8 HOH A 22 722 145 HOH HOH . V 8 HOH A 23 723 108 HOH HOH . V 8 HOH A 24 724 107 HOH HOH . V 8 HOH A 25 725 4 HOH HOH . V 8 HOH A 26 726 31 HOH HOH . V 8 HOH A 27 727 42 HOH HOH . V 8 HOH A 28 728 137 HOH HOH . V 8 HOH A 29 729 26 HOH HOH . V 8 HOH A 30 730 10 HOH HOH . V 8 HOH A 31 731 106 HOH HOH . V 8 HOH A 32 732 49 HOH HOH . V 8 HOH A 33 733 43 HOH HOH . V 8 HOH A 34 734 54 HOH HOH . V 8 HOH A 35 735 27 HOH HOH . V 8 HOH A 36 736 48 HOH HOH . V 8 HOH A 37 737 2 HOH HOH . V 8 HOH A 38 738 45 HOH HOH . V 8 HOH A 39 739 25 HOH HOH . V 8 HOH A 40 740 44 HOH HOH . V 8 HOH A 41 741 9 HOH HOH . V 8 HOH A 42 742 20 HOH HOH . V 8 HOH A 43 743 47 HOH HOH . V 8 HOH A 44 744 55 HOH HOH . V 8 HOH A 45 745 117 HOH HOH . V 8 HOH A 46 746 1 HOH HOH . V 8 HOH A 47 747 18 HOH HOH . V 8 HOH A 48 748 17 HOH HOH . V 8 HOH A 49 749 50 HOH HOH . V 8 HOH A 50 750 3 HOH HOH . V 8 HOH A 51 751 153 HOH HOH . V 8 HOH A 52 752 7 HOH HOH . V 8 HOH A 53 753 24 HOH HOH . V 8 HOH A 54 754 155 HOH HOH . V 8 HOH A 55 755 112 HOH HOH . V 8 HOH A 56 756 53 HOH HOH . V 8 HOH A 57 757 123 HOH HOH . V 8 HOH A 58 758 130 HOH HOH . V 8 HOH A 59 759 114 HOH HOH . V 8 HOH A 60 760 14 HOH HOH . V 8 HOH A 61 761 135 HOH HOH . V 8 HOH A 62 762 116 HOH HOH . V 8 HOH A 63 763 33 HOH HOH . V 8 HOH A 64 764 120 HOH HOH . V 8 HOH A 65 765 109 HOH HOH . V 8 HOH A 66 766 144 HOH HOH . V 8 HOH A 67 767 6 HOH HOH . W 8 HOH B 1 701 58 HOH HOH . W 8 HOH B 2 702 91 HOH HOH . W 8 HOH B 3 703 16 HOH HOH . W 8 HOH B 4 704 73 HOH HOH . W 8 HOH B 5 705 82 HOH HOH . W 8 HOH B 6 706 64 HOH HOH . W 8 HOH B 7 707 90 HOH HOH . W 8 HOH B 8 708 63 HOH HOH . W 8 HOH B 9 709 75 HOH HOH . W 8 HOH B 10 710 72 HOH HOH . W 8 HOH B 11 711 61 HOH HOH . W 8 HOH B 12 712 70 HOH HOH . W 8 HOH B 13 713 110 HOH HOH . W 8 HOH B 14 714 86 HOH HOH . W 8 HOH B 15 715 84 HOH HOH . W 8 HOH B 16 716 140 HOH HOH . W 8 HOH B 17 717 83 HOH HOH . W 8 HOH B 18 718 74 HOH HOH . W 8 HOH B 19 719 128 HOH HOH . W 8 HOH B 20 720 15 HOH HOH . W 8 HOH B 21 721 59 HOH HOH . W 8 HOH B 22 722 141 HOH HOH . W 8 HOH B 23 723 78 HOH HOH . W 8 HOH B 24 724 80 HOH HOH . W 8 HOH B 25 725 69 HOH HOH . W 8 HOH B 26 726 88 HOH HOH . W 8 HOH B 27 727 71 HOH HOH . W 8 HOH B 28 728 129 HOH HOH . W 8 HOH B 29 729 143 HOH HOH . W 8 HOH B 30 730 81 HOH HOH . W 8 HOH B 31 731 62 HOH HOH . W 8 HOH B 32 732 139 HOH HOH . W 8 HOH B 33 733 68 HOH HOH . W 8 HOH B 34 734 57 HOH HOH . W 8 HOH B 35 735 66 HOH HOH . W 8 HOH B 36 736 67 HOH HOH . W 8 HOH B 37 737 77 HOH HOH . W 8 HOH B 38 738 79 HOH HOH . W 8 HOH B 39 739 138 HOH HOH . W 8 HOH B 40 740 19 HOH HOH . W 8 HOH B 41 741 85 HOH HOH . W 8 HOH B 42 742 65 HOH HOH . W 8 HOH B 43 743 87 HOH HOH . W 8 HOH B 44 744 13 HOH HOH . W 8 HOH B 45 745 89 HOH HOH . W 8 HOH B 46 746 115 HOH HOH . W 8 HOH B 47 747 127 HOH HOH . W 8 HOH B 48 748 134 HOH HOH . W 8 HOH B 49 749 60 HOH HOH . W 8 HOH B 50 750 132 HOH HOH . X 8 HOH L 1 401 40 HOH HOH . X 8 HOH L 2 402 147 HOH HOH . X 8 HOH L 3 403 148 HOH HOH . X 8 HOH L 4 404 92 HOH HOH . X 8 HOH L 5 405 156 HOH HOH . X 8 HOH L 6 406 38 HOH HOH . X 8 HOH L 7 407 96 HOH HOH . X 8 HOH L 8 408 35 HOH HOH . X 8 HOH L 9 409 119 HOH HOH . X 8 HOH L 10 410 39 HOH HOH . X 8 HOH L 11 411 99 HOH HOH . X 8 HOH L 12 412 95 HOH HOH . X 8 HOH L 13 413 36 HOH HOH . X 8 HOH L 14 414 126 HOH HOH . X 8 HOH L 15 415 41 HOH HOH . X 8 HOH L 16 416 142 HOH HOH . X 8 HOH L 17 417 93 HOH HOH . X 8 HOH L 18 418 94 HOH HOH . Y 8 HOH H 1 401 152 HOH HOH . Y 8 HOH H 2 402 101 HOH HOH . Y 8 HOH H 3 403 98 HOH HOH . Y 8 HOH H 4 404 97 HOH HOH . Y 8 HOH H 5 405 124 HOH HOH . Y 8 HOH H 6 406 100 HOH HOH . Y 8 HOH H 7 407 118 HOH HOH . Y 8 HOH H 8 408 122 HOH HOH . Y 8 HOH H 9 409 151 HOH HOH . Y 8 HOH H 10 410 125 HOH HOH . Y 8 HOH H 11 411 121 HOH HOH . Z 8 HOH E 1 301 102 HOH HOH . Z 8 HOH E 2 302 150 HOH HOH . Z 8 HOH E 3 303 104 HOH HOH . Z 8 HOH E 4 304 149 HOH HOH . Z 8 HOH E 5 305 103 HOH HOH . AA 8 HOH F 1 301 76 HOH HOH . AA 8 HOH F 2 302 105 HOH HOH . AA 8 HOH F 3 303 136 HOH HOH . AA 8 HOH F 4 304 131 HOH HOH . AA 8 HOH F 5 305 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 5 198.075 -74.992 150.801 1 47.03 ? C1 EDO 607 A 1 HETATM 2 O O1 EDO . . . M 5 197.173 -74.703 151.869 1 47.27 ? O1 EDO 607 A 1 HETATM 3 C C2 EDO . . . M 5 198.95 -73.785 150.51 1 47.03 ? C2 EDO 607 A 1 HETATM 4 O O2 EDO . . . M 5 200.225 -73.975 151.125 1 48.07 ? O2 EDO 607 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 408 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #