data_5WIB # _model_server_result.job_id R-pdhM9BnQ3gjSHTPH2Iiw _model_server_result.datetime_utc '2024-11-23 06:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5WIB # _exptl.entry_id 5WIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Imipenem _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIB _cell.length_a 98.398 _cell.length_b 144.744 _cell.length_c 43.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 59 A SER 79 1_555 C C7 ID1 . A ID1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale2 B OG SER 59 B SER 79 1_555 D C7 ID1 . B ID1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C12 H19 N3 O4 S' _chem_comp.formula_weight 301.362 _chem_comp.id ID1 _chem_comp.mon_nstd_flag . _chem_comp.name Imipenem _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 C31 ID1 doub 139 n n C31 O32 ID1 sing 140 n n C31 C3 ID1 sing 141 n n C7 C6 ID1 sing 142 n n C7 O7 ID1 doub 143 n n C3 N4 ID1 doub 144 n n C3 C2 ID1 sing 145 n n N4 C5 ID1 sing 146 n n S21 C2 ID1 sing 147 n n S21 C22 ID1 sing 148 n n C6 C5 ID1 sing 149 n n C6 C61 ID1 sing 150 n n C62 C61 ID1 sing 151 n n C2 C1 ID1 sing 152 n n C5 C1 ID1 sing 153 n n C61 O62 ID1 sing 154 n n C22 C23 ID1 sing 155 n n N24 C23 ID1 sing 156 n n N24 C25 ID1 doub 157 n n C25 N26 ID1 sing 158 n n C7 H1 ID1 sing 159 n n C2 H2 ID1 sing 160 n n C6 H3 ID1 sing 161 n n C5 H4 ID1 sing 162 n n C61 H6 ID1 sing 163 n n O62 H7 ID1 sing 164 n n C62 H8 ID1 sing 165 n n C62 H9 ID1 sing 166 n n C62 H10 ID1 sing 167 n n O32 H13 ID1 sing 168 n n C22 H14 ID1 sing 169 n n C22 H15 ID1 sing 170 n n C23 H16 ID1 sing 171 n n C23 H17 ID1 sing 172 n n C25 H18 ID1 sing 173 n n N26 H19 ID1 sing 174 n n N26 H20 ID1 sing 175 n n C1 H21 ID1 sing 176 n n C1 H22 ID1 sing 177 n n # _atom_sites.entry_id 5WIB _atom_sites.fract_transf_matrix[1][1] 0.010163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ID1 A 1 301 2 ID1 ID1 . D 2 ID1 B 1 301 1 ID1 ID1 . E 3 HOH A 1 401 216 HOH HOH . E 3 HOH A 2 402 59 HOH HOH . E 3 HOH A 3 403 210 HOH HOH . E 3 HOH A 4 404 114 HOH HOH . E 3 HOH A 5 405 58 HOH HOH . E 3 HOH A 6 406 159 HOH HOH . E 3 HOH A 7 407 10 HOH HOH . E 3 HOH A 8 408 127 HOH HOH . E 3 HOH A 9 409 47 HOH HOH . E 3 HOH A 10 410 220 HOH HOH . E 3 HOH A 11 411 211 HOH HOH . E 3 HOH A 12 412 55 HOH HOH . E 3 HOH A 13 413 177 HOH HOH . E 3 HOH A 14 414 44 HOH HOH . E 3 HOH A 15 415 57 HOH HOH . E 3 HOH A 16 416 82 HOH HOH . E 3 HOH A 17 417 17 HOH HOH . E 3 HOH A 18 418 157 HOH HOH . E 3 HOH A 19 419 126 HOH HOH . E 3 HOH A 20 420 76 HOH HOH . E 3 HOH A 21 421 43 HOH HOH . E 3 HOH A 22 422 155 HOH HOH . E 3 HOH A 23 423 20 HOH HOH . E 3 HOH A 24 424 3 HOH HOH . E 3 HOH A 25 425 168 HOH HOH . E 3 HOH A 26 426 83 HOH HOH . E 3 HOH A 27 427 125 HOH HOH . E 3 HOH A 28 428 45 HOH HOH . E 3 HOH A 29 429 117 HOH HOH . E 3 HOH A 30 430 64 HOH HOH . E 3 HOH A 31 431 111 HOH HOH . E 3 HOH A 32 432 52 HOH HOH . E 3 HOH A 33 433 56 HOH HOH . E 3 HOH A 34 434 217 HOH HOH . E 3 HOH A 35 435 39 HOH HOH . E 3 HOH A 36 436 143 HOH HOH . E 3 HOH A 37 437 42 HOH HOH . E 3 HOH A 38 438 123 HOH HOH . E 3 HOH A 39 439 139 HOH HOH . E 3 HOH A 40 440 12 HOH HOH . E 3 HOH A 41 441 137 HOH HOH . E 3 HOH A 42 442 41 HOH HOH . E 3 HOH A 43 443 7 HOH HOH . E 3 HOH A 44 444 173 HOH HOH . E 3 HOH A 45 445 61 HOH HOH . E 3 HOH A 46 446 74 HOH HOH . E 3 HOH A 47 447 53 HOH HOH . E 3 HOH A 48 448 92 HOH HOH . E 3 HOH A 49 449 154 HOH HOH . E 3 HOH A 50 450 4 HOH HOH . E 3 HOH A 51 451 75 HOH HOH . E 3 HOH A 52 452 192 HOH HOH . E 3 HOH A 53 453 50 HOH HOH . E 3 HOH A 54 454 93 HOH HOH . E 3 HOH A 55 455 38 HOH HOH . E 3 HOH A 56 456 81 HOH HOH . E 3 HOH A 57 457 87 HOH HOH . E 3 HOH A 58 458 62 HOH HOH . E 3 HOH A 59 459 156 HOH HOH . E 3 HOH A 60 460 80 HOH HOH . E 3 HOH A 61 461 212 HOH HOH . E 3 HOH A 62 462 208 HOH HOH . E 3 HOH A 63 463 151 HOH HOH . E 3 HOH A 64 464 49 HOH HOH . E 3 HOH A 65 465 120 HOH HOH . E 3 HOH A 66 466 84 HOH HOH . E 3 HOH A 67 467 8 HOH HOH . E 3 HOH A 68 468 202 HOH HOH . E 3 HOH A 69 469 121 HOH HOH . E 3 HOH A 70 470 94 HOH HOH . E 3 HOH A 71 471 19 HOH HOH . E 3 HOH A 72 472 178 HOH HOH . E 3 HOH A 73 473 46 HOH HOH . E 3 HOH A 74 474 60 HOH HOH . E 3 HOH A 75 475 204 HOH HOH . E 3 HOH A 76 476 219 HOH HOH . E 3 HOH A 77 477 198 HOH HOH . E 3 HOH A 78 478 218 HOH HOH . E 3 HOH A 79 479 73 HOH HOH . E 3 HOH A 80 480 149 HOH HOH . E 3 HOH A 81 481 1 HOH HOH . E 3 HOH A 82 482 86 HOH HOH . E 3 HOH A 83 483 206 HOH HOH . E 3 HOH A 84 484 195 HOH HOH . E 3 HOH A 85 485 66 HOH HOH . E 3 HOH A 86 486 207 HOH HOH . E 3 HOH A 87 487 171 HOH HOH . E 3 HOH A 88 488 63 HOH HOH . E 3 HOH A 89 489 166 HOH HOH . E 3 HOH A 90 490 116 HOH HOH . E 3 HOH A 91 491 141 HOH HOH . E 3 HOH A 92 492 181 HOH HOH . E 3 HOH A 93 493 167 HOH HOH . E 3 HOH A 94 494 18 HOH HOH . E 3 HOH A 95 495 203 HOH HOH . E 3 HOH A 96 496 182 HOH HOH . E 3 HOH A 97 497 2 HOH HOH . E 3 HOH A 98 498 184 HOH HOH . E 3 HOH A 99 499 48 HOH HOH . E 3 HOH A 100 500 163 HOH HOH . E 3 HOH A 101 501 96 HOH HOH . E 3 HOH A 102 502 186 HOH HOH . E 3 HOH A 103 503 79 HOH HOH . E 3 HOH A 104 504 11 HOH HOH . E 3 HOH A 105 505 23 HOH HOH . E 3 HOH A 106 506 130 HOH HOH . E 3 HOH A 107 507 88 HOH HOH . E 3 HOH A 108 508 187 HOH HOH . E 3 HOH A 109 509 205 HOH HOH . E 3 HOH A 110 510 65 HOH HOH . E 3 HOH A 111 511 122 HOH HOH . E 3 HOH A 112 512 21 HOH HOH . E 3 HOH A 113 513 215 HOH HOH . E 3 HOH A 114 514 214 HOH HOH . E 3 HOH A 115 515 91 HOH HOH . E 3 HOH A 116 516 196 HOH HOH . E 3 HOH A 117 517 138 HOH HOH . E 3 HOH A 118 518 85 HOH HOH . E 3 HOH A 119 519 222 HOH HOH . E 3 HOH A 120 520 213 HOH HOH . E 3 HOH A 121 521 221 HOH HOH . E 3 HOH A 122 522 165 HOH HOH . E 3 HOH A 123 523 209 HOH HOH . E 3 HOH A 124 524 128 HOH HOH . E 3 HOH A 125 525 183 HOH HOH . E 3 HOH A 126 526 89 HOH HOH . E 3 HOH A 127 527 54 HOH HOH . E 3 HOH A 128 528 95 HOH HOH . E 3 HOH A 129 529 124 HOH HOH . E 3 HOH A 130 530 164 HOH HOH . E 3 HOH A 131 531 180 HOH HOH . E 3 HOH A 132 532 51 HOH HOH . E 3 HOH A 133 533 22 HOH HOH . E 3 HOH A 134 534 72 HOH HOH . E 3 HOH A 135 535 115 HOH HOH . E 3 HOH A 136 536 40 HOH HOH . E 3 HOH A 137 537 152 HOH HOH . E 3 HOH A 138 538 113 HOH HOH . F 3 HOH B 1 401 15 HOH HOH . F 3 HOH B 2 402 119 HOH HOH . F 3 HOH B 3 403 69 HOH HOH . F 3 HOH B 4 404 71 HOH HOH . F 3 HOH B 5 405 16 HOH HOH . F 3 HOH B 6 406 35 HOH HOH . F 3 HOH B 7 407 100 HOH HOH . F 3 HOH B 8 408 99 HOH HOH . F 3 HOH B 9 409 32 HOH HOH . F 3 HOH B 10 410 140 HOH HOH . F 3 HOH B 11 411 224 HOH HOH . F 3 HOH B 12 412 169 HOH HOH . F 3 HOH B 13 413 118 HOH HOH . F 3 HOH B 14 414 98 HOH HOH . F 3 HOH B 15 415 194 HOH HOH . F 3 HOH B 16 416 107 HOH HOH . F 3 HOH B 17 417 6 HOH HOH . F 3 HOH B 18 418 97 HOH HOH . F 3 HOH B 19 419 67 HOH HOH . F 3 HOH B 20 420 77 HOH HOH . F 3 HOH B 21 421 193 HOH HOH . F 3 HOH B 22 422 131 HOH HOH . F 3 HOH B 23 423 108 HOH HOH . F 3 HOH B 24 424 13 HOH HOH . F 3 HOH B 25 425 134 HOH HOH . F 3 HOH B 26 426 135 HOH HOH . F 3 HOH B 27 427 78 HOH HOH . F 3 HOH B 28 428 161 HOH HOH . F 3 HOH B 29 429 146 HOH HOH . F 3 HOH B 30 430 29 HOH HOH . F 3 HOH B 31 431 110 HOH HOH . F 3 HOH B 32 432 27 HOH HOH . F 3 HOH B 33 433 144 HOH HOH . F 3 HOH B 34 434 176 HOH HOH . F 3 HOH B 35 435 105 HOH HOH . F 3 HOH B 36 436 175 HOH HOH . F 3 HOH B 37 437 145 HOH HOH . F 3 HOH B 38 438 9 HOH HOH . F 3 HOH B 39 439 112 HOH HOH . F 3 HOH B 40 440 14 HOH HOH . F 3 HOH B 41 441 104 HOH HOH . F 3 HOH B 42 442 30 HOH HOH . F 3 HOH B 43 443 31 HOH HOH . F 3 HOH B 44 444 199 HOH HOH . F 3 HOH B 45 445 106 HOH HOH . F 3 HOH B 46 446 174 HOH HOH . F 3 HOH B 47 447 185 HOH HOH . F 3 HOH B 48 448 103 HOH HOH . F 3 HOH B 49 449 70 HOH HOH . F 3 HOH B 50 450 225 HOH HOH . F 3 HOH B 51 451 172 HOH HOH . F 3 HOH B 52 452 101 HOH HOH . F 3 HOH B 53 453 33 HOH HOH . F 3 HOH B 54 454 223 HOH HOH . F 3 HOH B 55 455 109 HOH HOH . F 3 HOH B 56 456 36 HOH HOH . F 3 HOH B 57 457 90 HOH HOH . F 3 HOH B 58 458 28 HOH HOH . F 3 HOH B 59 459 201 HOH HOH . F 3 HOH B 60 460 148 HOH HOH . F 3 HOH B 61 461 26 HOH HOH . F 3 HOH B 62 462 162 HOH HOH . F 3 HOH B 63 463 197 HOH HOH . F 3 HOH B 64 464 68 HOH HOH . F 3 HOH B 65 465 5 HOH HOH . F 3 HOH B 66 466 102 HOH HOH . F 3 HOH B 67 467 189 HOH HOH . F 3 HOH B 68 468 150 HOH HOH . F 3 HOH B 69 469 158 HOH HOH . F 3 HOH B 70 470 188 HOH HOH . F 3 HOH B 71 471 136 HOH HOH . F 3 HOH B 72 472 226 HOH HOH . F 3 HOH B 73 473 191 HOH HOH . F 3 HOH B 74 474 147 HOH HOH . F 3 HOH B 75 475 132 HOH HOH . F 3 HOH B 76 476 142 HOH HOH . F 3 HOH B 77 477 37 HOH HOH . F 3 HOH B 78 478 133 HOH HOH . F 3 HOH B 79 479 129 HOH HOH . F 3 HOH B 80 480 153 HOH HOH . F 3 HOH B 81 481 190 HOH HOH . F 3 HOH B 82 482 170 HOH HOH . F 3 HOH B 83 483 25 HOH HOH . F 3 HOH B 84 484 179 HOH HOH . F 3 HOH B 85 485 200 HOH HOH . F 3 HOH B 86 486 24 HOH HOH . F 3 HOH B 87 487 34 HOH HOH . F 3 HOH B 88 488 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 ID1 . . . D 2 29.46 -0.279 61.05 1 45.75 ? C7 ID1 301 B 1 HETATM 2 C C2 ID1 . . . D 2 32.014 -3.729 60.547 1 55.33 ? C2 ID1 301 B 1 HETATM 3 C C6 ID1 . . . D 2 30.586 -1 61.727 1 50.23 ? C6 ID1 301 B 1 HETATM 4 C C5 ID1 . . . D 2 31.659 -1.333 60.697 1 48.92 ? C5 ID1 301 B 1 HETATM 5 C C3 ID1 . . . D 2 31.119 -3.194 59.481 1 46.95 ? C3 ID1 301 B 1 HETATM 6 O O7 ID1 . . . D 2 28.308 -0.708 61.093 1 35.93 ? O7 ID1 301 B 1 HETATM 7 C C61 ID1 . . . D 2 31.134 -0.101 62.829 1 61.54 ? C61 ID1 301 B 1 HETATM 8 O O62 ID1 . . . D 2 32.163 -0.789 63.545 1 74.65 ? O62 ID1 301 B 1 HETATM 9 C C62 ID1 . . . D 2 30.048 0.319 63.808 1 63.08 ? C62 ID1 301 B 1 HETATM 10 N N4 ID1 . . . D 2 30.988 -1.946 59.557 1 48.09 ? N4 ID1 301 B 1 HETATM 11 C C31 ID1 . . . D 2 30.231 -4.012 58.652 1 65.41 ? C31 ID1 301 B 1 HETATM 12 O O31 ID1 . . . D 2 29.111 -3.55 58.312 1 40.89 ? O31 ID1 301 B 1 HETATM 13 O O32 ID1 . . . D 2 30.612 -5.16 58.318 1 54.34 ? O32 ID1 301 B 1 HETATM 14 S S21 ID1 . . . D 2 31.078 -4.591 61.771 1 63.63 ? S21 ID1 301 B 1 HETATM 15 C C22 ID1 . . . D 2 31.454 -6.315 61.763 1 73.74 ? C22 ID1 301 B 1 HETATM 16 C C23 ID1 . . . D 2 32.34 -6.712 60.585 1 77.01 ? C23 ID1 301 B 1 HETATM 17 N N24 ID1 . . . D 2 32.965 -8.003 60.808 1 73.53 ? N24 ID1 301 B 1 HETATM 18 C C25 ID1 . . . D 2 32.254 -9.034 61.256 1 77.82 ? C25 ID1 301 B 1 HETATM 19 N N26 ID1 . . . D 2 32.809 -10.149 61.437 1 91.38 ? N26 ID1 301 B 1 HETATM 20 C C1 ID1 . . . D 2 32.58 -2.46 61.163 1 51.76 ? C1 ID1 301 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #