data_5WIE # _model_server_result.job_id ZC321p6srJz4ruZ0dZZtDg _model_server_result.datetime_utc '2024-10-18 20:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 5WIE # _exptl.entry_id 5WIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIE _cell.length_a 143.124 _cell.length_b 143.124 _cell.length_c 284.51 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA octameric 8 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N 1 1,2,3,4 C,D,O,P,Q,R,S,T 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 143.124 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 71.562 71.562 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -71.562 71.562 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O THR 407 B THR 370 1_555 L K K . B K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc2 B O THR 407 B THR 370 1_555 L K K . B K 507 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc3 B O THR 407 B THR 370 1_555 M K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc4 B OG1 THR 407 B THR 370 1_555 M K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc5 B O THR 407 B THR 370 1_555 M K K . B K 508 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc6 B OG1 THR 407 B THR 370 1_555 M K K . B K 508 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc7 B O VAL 408 B VAL 371 1_555 K K K . B K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc8 B O VAL 408 B VAL 371 1_555 K K K . B K 506 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc9 B O VAL 408 B VAL 371 1_555 L K K . B K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc10 B O VAL 408 B VAL 371 1_555 L K K . B K 507 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc11 B O GLY 409 B GLY 372 1_555 K K K . B K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc12 B O GLY 409 B GLY 372 1_555 K K K . B K 506 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc13 D O THR 407 H THR 370 1_555 S K K . H K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc14 D O THR 407 H THR 370 1_555 S K K . H K 504 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc15 D O THR 407 H THR 370 1_555 T K K . H K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.453 ? metalc ? metalc16 D OG1 THR 407 H THR 370 1_555 T K K . H K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc17 D O THR 407 H THR 370 1_555 T K K . H K 505 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.453 ? metalc ? metalc18 D OG1 THR 407 H THR 370 1_555 T K K . H K 505 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc19 D O VAL 408 H VAL 371 1_555 R K K . H K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc20 D O VAL 408 H VAL 371 1_555 R K K . H K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc21 D O VAL 408 H VAL 371 1_555 S K K . H K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc22 D O VAL 408 H VAL 371 1_555 S K K . H K 504 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc23 D O GLY 409 H GLY 372 1_555 Q K K . H K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? metalc ? metalc24 D O GLY 409 H GLY 372 1_555 Q K K . H K 502 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? metalc ? metalc25 D O GLY 409 H GLY 372 1_555 R K K . H K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc26 D O GLY 409 H GLY 372 1_555 R K K . H K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc27 D O TYR 410 H TYR 373 1_555 Q K K . H K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc28 D O TYR 410 H TYR 373 1_555 Q K K . H K 502 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 235 n n PA O2A NAP sing 236 n n PA O5B NAP sing 237 n n PA O3 NAP sing 238 n n O2A HOA2 NAP sing 239 n n O5B C5B NAP sing 240 n n C5B C4B NAP sing 241 n n C5B H51A NAP sing 242 n n C5B H52A NAP sing 243 n n C4B O4B NAP sing 244 n n C4B C3B NAP sing 245 n n C4B H4B NAP sing 246 n n O4B C1B NAP sing 247 n n C3B O3B NAP sing 248 n n C3B C2B NAP sing 249 n n C3B H3B NAP sing 250 n n O3B HO3A NAP sing 251 n n C2B O2B NAP sing 252 n n C2B C1B NAP sing 253 n n C2B H2B NAP sing 254 n n O2B P2B NAP sing 255 n n C1B N9A NAP sing 256 n n C1B H1B NAP sing 257 n n N9A C8A NAP sing 258 n y N9A C4A NAP sing 259 n y C8A N7A NAP doub 260 n y C8A H8A NAP sing 261 n n N7A C5A NAP sing 262 n y C5A C6A NAP sing 263 n y C5A C4A NAP doub 264 n y C6A N6A NAP sing 265 n n C6A N1A NAP doub 266 n y N6A H61A NAP sing 267 n n N6A H62A NAP sing 268 n n N1A C2A NAP sing 269 n y C2A N3A NAP doub 270 n y C2A H2A NAP sing 271 n n N3A C4A NAP sing 272 n y O3 PN NAP sing 273 n n PN O1N NAP doub 274 n n PN O2N NAP sing 275 n n PN O5D NAP sing 276 n n O5D C5D NAP sing 277 n n C5D C4D NAP sing 278 n n C5D H51N NAP sing 279 n n C5D H52N NAP sing 280 n n C4D O4D NAP sing 281 n n C4D C3D NAP sing 282 n n C4D H4D NAP sing 283 n n O4D C1D NAP sing 284 n n C3D O3D NAP sing 285 n n C3D C2D NAP sing 286 n n C3D H3D NAP sing 287 n n O3D HO3N NAP sing 288 n n C2D O2D NAP sing 289 n n C2D C1D NAP sing 290 n n C2D H2D NAP sing 291 n n O2D HO2N NAP sing 292 n n C1D N1N NAP sing 293 n n C1D H1D NAP sing 294 n n N1N C2N NAP sing 295 n y N1N C6N NAP doub 296 n y C2N C3N NAP doub 297 n y C2N H2N NAP sing 298 n n C3N C7N NAP sing 299 n n C3N C4N NAP sing 300 n y C7N O7N NAP doub 301 n n C7N N7N NAP sing 302 n n N7N H71N NAP sing 303 n n N7N H72N NAP sing 304 n n C4N C5N NAP doub 305 n y C4N H4N NAP sing 306 n n C5N C6N NAP sing 307 n y C5N H5N NAP sing 308 n n C6N H6N NAP sing 309 n n P2B O1X NAP doub 310 n n P2B O2X NAP sing 311 n n P2B O3X NAP sing 312 n n O2X HOP2 NAP sing 313 n n O3X HOP3 NAP sing 314 n n # _atom_sites.entry_id 5WIE _atom_sites.fract_transf_matrix[1][1] 0.006987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAP A 1 1001 1001 NAP NAP . F 4 PGW B 1 501 500 PGW PGW . G 4 PGW B 1 502 501 PGW PGW . H 4 PGW B 1 503 502 PGW PGW . I 4 PGW B 1 504 506 PGW PGW . J 4 PGW B 1 505 513 PGW PGW . K 5 K B 1 506 1 K K . L 5 K B 1 507 2 K K . M 5 K B 1 508 3 K K . N 5 K B 1 509 4 K K . O 3 NAP G 1 1001 1001 NAP NAP . P 4 PGW H 1 501 500 PGW PGW . Q 5 K H 1 502 5 K K . R 5 K H 1 503 6 K K . S 5 K H 1 504 7 K K . T 5 K H 1 505 8 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 3 -23.121 39.31 74.432 1 44.11 ? PA NAP 1001 A 1 HETATM 2 O O1A NAP . . . E 3 -22.732 38.499 75.6 1 43.74 ? O1A NAP 1001 A 1 HETATM 3 O O2A NAP . . . E 3 -24.335 40.102 74.48 1 43.75 ? O2A NAP 1001 A 1 HETATM 4 O O5B NAP . . . E 3 -23.099 38.307 73.199 1 45.97 ? O5B NAP 1001 A 1 HETATM 5 C C5B NAP . . . E 3 -23.458 38.812 71.886 1 48.98 ? C5B NAP 1001 A 1 HETATM 6 C C4B NAP . . . E 3 -23.458 37.646 70.933 1 49.64 ? C4B NAP 1001 A 1 HETATM 7 O O4B NAP . . . E 3 -24.522 36.676 71.347 1 50.02 ? O4B NAP 1001 A 1 HETATM 8 C C3B NAP . . . E 3 -23.784 37.962 69.483 1 50.83 ? C3B NAP 1001 A 1 HETATM 9 O O3B NAP . . . E 3 -22.567 38.127 68.754 1 50.8 ? O3B NAP 1001 A 1 HETATM 10 C C2B NAP . . . E 3 -24.567 36.76 69.026 1 51.69 ? C2B NAP 1001 A 1 HETATM 11 O O2B NAP . . . E 3 -23.643 35.74 68.691 1 55.11 ? O2B NAP 1001 A 1 HETATM 12 C C1B NAP . . . E 3 -25.365 36.383 70.218 1 49.85 ? C1B NAP 1001 A 1 HETATM 13 N N9A NAP . . . E 3 -26.675 37.044 70.375 1 48.2 ? N9A NAP 1001 A 1 HETATM 14 C C8A NAP . . . E 3 -26.969 38.347 70.734 1 48.24 ? C8A NAP 1001 A 1 HETATM 15 N N7A NAP . . . E 3 -28.258 38.625 70.784 1 47.39 ? N7A NAP 1001 A 1 HETATM 16 C C5A NAP . . . E 3 -28.837 37.458 70.443 1 47.77 ? C5A NAP 1001 A 1 HETATM 17 C C6A NAP . . . E 3 -30.19 37.098 70.303 1 47.67 ? C6A NAP 1001 A 1 HETATM 18 N N6A NAP . . . E 3 -31.199 37.948 70.506 1 47.8 ? N6A NAP 1001 A 1 HETATM 19 N N1A NAP . . . E 3 -30.429 35.815 69.941 1 47.45 ? N1A NAP 1001 A 1 HETATM 20 C C2A NAP . . . E 3 -29.473 34.926 69.719 1 47.13 ? C2A NAP 1001 A 1 HETATM 21 N N3A NAP . . . E 3 -28.147 35.162 69.817 1 46.92 ? N3A NAP 1001 A 1 HETATM 22 C C4A NAP . . . E 3 -27.875 36.467 70.19 1 47.56 ? C4A NAP 1001 A 1 HETATM 23 O O3 NAP . . . E 3 -21.894 40.288 74.105 1 42.87 ? O3 NAP 1001 A 1 HETATM 24 P PN NAP . . . E 3 -20.401 40.274 73.669 1 42.42 ? PN NAP 1001 A 1 HETATM 25 O O1N NAP . . . E 3 -20.332 40.223 72.186 1 43.22 ? O1N NAP 1001 A 1 HETATM 26 O O2N NAP . . . E 3 -19.752 39.167 74.397 1 39.96 ? O2N NAP 1001 A 1 HETATM 27 O O5D NAP . . . E 3 -19.817 41.644 74.26 1 43.02 ? O5D NAP 1001 A 1 HETATM 28 C C5D NAP . . . E 3 -20.345 42.938 73.853 1 41.9 ? C5D NAP 1001 A 1 HETATM 29 C C4D NAP . . . E 3 -19.265 43.951 73.722 1 40.97 ? C4D NAP 1001 A 1 HETATM 30 O O4D NAP . . . E 3 -18.588 44.121 74.996 1 41.83 ? O4D NAP 1001 A 1 HETATM 31 C C3D NAP . . . E 3 -18.135 43.642 72.758 1 40.65 ? C3D NAP 1001 A 1 HETATM 32 O O3D NAP . . . E 3 -18.473 43.694 71.429 1 38.69 ? O3D NAP 1001 A 1 HETATM 33 C C2D NAP . . . E 3 -17.115 44.618 73.238 1 41.21 ? C2D NAP 1001 A 1 HETATM 34 O O2D NAP . . . E 3 -17.408 45.89 72.702 1 40.73 ? O2D NAP 1001 A 1 HETATM 35 C C1D NAP . . . E 3 -17.289 44.549 74.762 1 41.48 ? C1D NAP 1001 A 1 HETATM 36 N N1N NAP . . . E 3 -16.286 43.659 75.44 1 42.75 ? N1N NAP 1001 A 1 HETATM 37 C C2N NAP . . . E 3 -15.383 44.242 76.281 1 44.09 ? C2N NAP 1001 A 1 HETATM 38 C C3N NAP . . . E 3 -14.404 43.509 76.915 1 45.46 ? C3N NAP 1001 A 1 HETATM 39 C C7N NAP . . . E 3 -13.41 44.129 77.827 1 47.01 ? C7N NAP 1001 A 1 HETATM 40 O O7N NAP . . . E 3 -12.379 43.505 78.086 1 49.15 ? O7N NAP 1001 A 1 HETATM 41 N N7N NAP . . . E 3 -13.726 45.328 78.302 1 47.67 ? N7N NAP 1001 A 1 HETATM 42 C C4N NAP . . . E 3 -14.321 42.094 76.685 1 44.5 ? C4N NAP 1001 A 1 HETATM 43 C C5N NAP . . . E 3 -15.252 41.473 75.821 1 43.17 ? C5N NAP 1001 A 1 HETATM 44 C C6N NAP . . . E 3 -16.224 42.238 75.201 1 42.34 ? C6N NAP 1001 A 1 HETATM 45 P P2B NAP . . . E 3 -23.841 34.658 67.529 1 55.33 ? P2B NAP 1001 A 1 HETATM 46 O O1X NAP . . . E 3 -24.136 33.39 68.26 1 55.11 ? O1X NAP 1001 A 1 HETATM 47 O O2X NAP . . . E 3 -24.97 35.263 66.738 1 54.06 ? O2X NAP 1001 A 1 HETATM 48 O O3X NAP . . . E 3 -22.583 34.6 66.751 1 55.39 ? O3X NAP 1001 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #