data_5WIE # _model_server_result.job_id N3fwvpZh6B49ORqZrKYX3w _model_server_result.datetime_utc '2024-10-18 20:30:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1001}' # _entry.id 5WIE # _exptl.entry_id 5WIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIE _cell.length_a 143.124 _cell.length_b 143.124 _cell.length_c 284.51 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA octameric 8 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N 1 1,2,3,4 C,D,O,P,Q,R,S,T 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 143.124 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 71.562 71.562 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -71.562 71.562 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O THR 407 B THR 370 1_555 L K K . B K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc2 B O THR 407 B THR 370 1_555 L K K . B K 507 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc3 B O THR 407 B THR 370 1_555 M K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc4 B OG1 THR 407 B THR 370 1_555 M K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc5 B O THR 407 B THR 370 1_555 M K K . B K 508 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc6 B OG1 THR 407 B THR 370 1_555 M K K . B K 508 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc7 B O VAL 408 B VAL 371 1_555 K K K . B K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc8 B O VAL 408 B VAL 371 1_555 K K K . B K 506 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc9 B O VAL 408 B VAL 371 1_555 L K K . B K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc10 B O VAL 408 B VAL 371 1_555 L K K . B K 507 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc11 B O GLY 409 B GLY 372 1_555 K K K . B K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc12 B O GLY 409 B GLY 372 1_555 K K K . B K 506 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc13 D O THR 407 H THR 370 1_555 S K K . H K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc14 D O THR 407 H THR 370 1_555 S K K . H K 504 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc15 D O THR 407 H THR 370 1_555 T K K . H K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.453 ? metalc ? metalc16 D OG1 THR 407 H THR 370 1_555 T K K . H K 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc17 D O THR 407 H THR 370 1_555 T K K . H K 505 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.453 ? metalc ? metalc18 D OG1 THR 407 H THR 370 1_555 T K K . H K 505 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc19 D O VAL 408 H VAL 371 1_555 R K K . H K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc20 D O VAL 408 H VAL 371 1_555 R K K . H K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc21 D O VAL 408 H VAL 371 1_555 S K K . H K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc22 D O VAL 408 H VAL 371 1_555 S K K . H K 504 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc23 D O GLY 409 H GLY 372 1_555 Q K K . H K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? metalc ? metalc24 D O GLY 409 H GLY 372 1_555 Q K K . H K 502 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? metalc ? metalc25 D O GLY 409 H GLY 372 1_555 R K K . H K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc26 D O GLY 409 H GLY 372 1_555 R K K . H K 503 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc27 D O TYR 410 H TYR 373 1_555 Q K K . H K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc28 D O TYR 410 H TYR 373 1_555 Q K K . H K 502 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 235 n n PA O2A NAP sing 236 n n PA O5B NAP sing 237 n n PA O3 NAP sing 238 n n O2A HOA2 NAP sing 239 n n O5B C5B NAP sing 240 n n C5B C4B NAP sing 241 n n C5B H51A NAP sing 242 n n C5B H52A NAP sing 243 n n C4B O4B NAP sing 244 n n C4B C3B NAP sing 245 n n C4B H4B NAP sing 246 n n O4B C1B NAP sing 247 n n C3B O3B NAP sing 248 n n C3B C2B NAP sing 249 n n C3B H3B NAP sing 250 n n O3B HO3A NAP sing 251 n n C2B O2B NAP sing 252 n n C2B C1B NAP sing 253 n n C2B H2B NAP sing 254 n n O2B P2B NAP sing 255 n n C1B N9A NAP sing 256 n n C1B H1B NAP sing 257 n n N9A C8A NAP sing 258 n y N9A C4A NAP sing 259 n y C8A N7A NAP doub 260 n y C8A H8A NAP sing 261 n n N7A C5A NAP sing 262 n y C5A C6A NAP sing 263 n y C5A C4A NAP doub 264 n y C6A N6A NAP sing 265 n n C6A N1A NAP doub 266 n y N6A H61A NAP sing 267 n n N6A H62A NAP sing 268 n n N1A C2A NAP sing 269 n y C2A N3A NAP doub 270 n y C2A H2A NAP sing 271 n n N3A C4A NAP sing 272 n y O3 PN NAP sing 273 n n PN O1N NAP doub 274 n n PN O2N NAP sing 275 n n PN O5D NAP sing 276 n n O5D C5D NAP sing 277 n n C5D C4D NAP sing 278 n n C5D H51N NAP sing 279 n n C5D H52N NAP sing 280 n n C4D O4D NAP sing 281 n n C4D C3D NAP sing 282 n n C4D H4D NAP sing 283 n n O4D C1D NAP sing 284 n n C3D O3D NAP sing 285 n n C3D C2D NAP sing 286 n n C3D H3D NAP sing 287 n n O3D HO3N NAP sing 288 n n C2D O2D NAP sing 289 n n C2D C1D NAP sing 290 n n C2D H2D NAP sing 291 n n O2D HO2N NAP sing 292 n n C1D N1N NAP sing 293 n n C1D H1D NAP sing 294 n n N1N C2N NAP sing 295 n y N1N C6N NAP doub 296 n y C2N C3N NAP doub 297 n y C2N H2N NAP sing 298 n n C3N C7N NAP sing 299 n n C3N C4N NAP sing 300 n y C7N O7N NAP doub 301 n n C7N N7N NAP sing 302 n n N7N H71N NAP sing 303 n n N7N H72N NAP sing 304 n n C4N C5N NAP doub 305 n y C4N H4N NAP sing 306 n n C5N C6N NAP sing 307 n y C5N H5N NAP sing 308 n n C6N H6N NAP sing 309 n n P2B O1X NAP doub 310 n n P2B O2X NAP sing 311 n n P2B O3X NAP sing 312 n n O2X HOP2 NAP sing 313 n n O3X HOP3 NAP sing 314 n n # _atom_sites.entry_id 5WIE _atom_sites.fract_transf_matrix[1][1] 0.006987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAP A 1 1001 1001 NAP NAP . F 4 PGW B 1 501 500 PGW PGW . G 4 PGW B 1 502 501 PGW PGW . H 4 PGW B 1 503 502 PGW PGW . I 4 PGW B 1 504 506 PGW PGW . J 4 PGW B 1 505 513 PGW PGW . K 5 K B 1 506 1 K K . L 5 K B 1 507 2 K K . M 5 K B 1 508 3 K K . N 5 K B 1 509 4 K K . O 3 NAP G 1 1001 1001 NAP NAP . P 4 PGW H 1 501 500 PGW PGW . Q 5 K H 1 502 5 K K . R 5 K H 1 503 6 K K . S 5 K H 1 504 7 K K . T 5 K H 1 505 8 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . O 3 17.176 35.866 220.624 1 56.35 ? PA NAP 1001 G 1 HETATM 2 O O1A NAP . . . O 3 18.093 35.858 221.774 1 55.75 ? O1A NAP 1001 G 1 HETATM 3 O O2A NAP . . . O 3 15.905 35.109 220.659 1 54.88 ? O2A NAP 1001 G 1 HETATM 4 O O5B NAP . . . O 3 18.043 35.48 219.37 1 57.84 ? O5B NAP 1001 G 1 HETATM 5 C C5B NAP . . . O 3 17.411 35.379 218.084 1 58.26 ? C5B NAP 1001 G 1 HETATM 6 C C4B NAP . . . O 3 18.45 34.905 217.11 1 57.64 ? C4B NAP 1001 G 1 HETATM 7 O O4B NAP . . . O 3 18.843 33.516 217.496 1 56.47 ? O4B NAP 1001 G 1 HETATM 8 C C3B NAP . . . O 3 17.995 34.783 215.683 1 58.76 ? C3B NAP 1001 G 1 HETATM 9 O O3B NAP . . . O 3 18.39 35.954 214.986 1 61.51 ? O3B NAP 1001 G 1 HETATM 10 C C2B NAP . . . O 3 18.702 33.557 215.185 1 58.31 ? C2B NAP 1001 G 1 HETATM 11 O O2B NAP . . . O 3 20.027 33.918 214.846 1 59.21 ? O2B NAP 1001 G 1 HETATM 12 C C1B NAP . . . O 3 18.689 32.646 216.355 1 57.42 ? C1B NAP 1001 G 1 HETATM 13 N N9A NAP . . . O 3 17.499 31.787 216.541 1 55.86 ? N9A NAP 1001 G 1 HETATM 14 C C8A NAP . . . O 3 16.203 32.145 216.856 1 55.4 ? C8A NAP 1001 G 1 HETATM 15 N N7A NAP . . . O 3 15.361 31.129 216.963 1 54.97 ? N7A NAP 1001 G 1 HETATM 16 C C5A NAP . . . O 3 16.12 30.065 216.71 1 55.61 ? C5A NAP 1001 G 1 HETATM 17 C C6A NAP . . . O 3 15.804 28.679 216.683 1 56.2 ? C6A NAP 1001 G 1 HETATM 18 N N6A NAP . . . O 3 14.59 28.216 216.931 1 54.1 ? N6A NAP 1001 G 1 HETATM 19 N N1A NAP . . . O 3 16.842 27.827 216.375 1 56.99 ? N1A NAP 1001 G 1 HETATM 20 C C2A NAP . . . O 3 18.081 28.265 216.119 1 56.84 ? C2A NAP 1001 G 1 HETATM 21 N N3A NAP . . . O 3 18.491 29.573 216.13 1 57.2 ? N3A NAP 1001 G 1 HETATM 22 C C4A NAP . . . O 3 17.458 30.446 216.437 1 56.2 ? C4A NAP 1001 G 1 HETATM 23 O O3 NAP . . . O 3 16.842 37.427 220.347 1 54.14 ? O3 NAP 1001 G 1 HETATM 24 P PN NAP . . . O 3 17.487 38.75 219.855 1 52.28 ? PN NAP 1001 G 1 HETATM 25 O O1N NAP . . . O 3 17.488 38.766 218.351 1 53.72 ? O1N NAP 1001 G 1 HETATM 26 O O2N NAP . . . O 3 18.808 38.849 220.565 1 50.6 ? O2N NAP 1001 G 1 HETATM 27 O O5D NAP . . . O 3 16.556 39.896 220.492 1 50.49 ? O5D NAP 1001 G 1 HETATM 28 C C5D NAP . . . O 3 15.174 40.028 220.112 1 48.15 ? C5D NAP 1001 G 1 HETATM 29 C C4D NAP . . . O 3 14.807 41.45 219.996 1 47.52 ? C4D NAP 1001 G 1 HETATM 30 O O4D NAP . . . O 3 14.993 42.125 221.276 1 46.62 ? O4D NAP 1001 G 1 HETATM 31 C C3D NAP . . . O 3 15.601 42.32 219.027 1 48.88 ? C3D NAP 1001 G 1 HETATM 32 O O3D NAP . . . O 3 15.388 42.059 217.682 1 49.56 ? O3D NAP 1001 G 1 HETATM 33 C C2D NAP . . . O 3 15.204 43.674 219.535 1 48.9 ? C2D NAP 1001 G 1 HETATM 34 O O2D NAP . . . O 3 13.926 43.961 218.995 1 49.78 ? O2D NAP 1001 G 1 HETATM 35 C C1D NAP . . . O 3 15.204 43.47 221.056 1 48.63 ? C1D NAP 1001 G 1 HETATM 36 N N1N NAP . . . O 3 16.459 43.904 221.748 1 48.56 ? N1N NAP 1001 G 1 HETATM 37 C C2N NAP . . . O 3 16.389 44.98 222.578 1 50.31 ? C2N NAP 1001 G 1 HETATM 38 C C3N NAP . . . O 3 17.493 45.483 223.222 1 50.08 ? C3N NAP 1001 G 1 HETATM 39 C C7N NAP . . . O 3 17.423 46.659 224.121 1 50.69 ? C7N NAP 1001 G 1 HETATM 40 O O7N NAP . . . O 3 18.434 47.288 224.356 1 52.33 ? O7N NAP 1001 G 1 HETATM 41 N N7N NAP . . . O 3 16.243 46.954 224.607 1 51.69 ? N7N NAP 1001 G 1 HETATM 42 C C4N NAP . . . O 3 18.762 44.861 223.021 1 48.51 ? C4N NAP 1001 G 1 HETATM 43 C C5N NAP . . . O 3 18.855 43.749 222.185 1 47.41 ? C5N NAP 1001 G 1 HETATM 44 C C6N NAP . . . O 3 17.724 43.266 221.547 1 47.93 ? C6N NAP 1001 G 1 HETATM 45 P P2B NAP . . . O 3 20.981 33.184 213.763 1 58.91 ? P2B NAP 1001 G 1 HETATM 46 O O1X NAP . . . O 3 21.91 32.373 214.596 1 57.85 ? O1X NAP 1001 G 1 HETATM 47 O O2X NAP . . . O 3 19.995 32.415 212.899 1 58.57 ? O2X NAP 1001 G 1 HETATM 48 O O3X NAP . . . O 3 21.663 34.298 213.008 1 59.82 ? O3X NAP 1001 G 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #