data_5WIF # _model_server_result.job_id 04pykGtpngUb5_EO1Roalg _model_server_result.datetime_utc '2024-11-23 21:52:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 5WIF # _exptl.entry_id 5WIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIF _cell.length_a 102.596 _cell.length_b 120.114 _cell.length_c 122.752 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 240.228 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_575 x,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 240.228 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OE1 GLU 38 C GLU 35 1_555 F K K . C K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc2 C OE2 GLU 79 C GLU 76 1_555 F K K . C K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc3 C OE2 GLU 79 C GLU 76 1_555 F K K . C K 201 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc4 F K K . C K 201 1_555 J O HOH . C HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc5 F K K . C K 201 1_555 J O HOH . C HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'C8 H18 O4' _chem_comp.formula_weight 178.226 _chem_comp.id PG5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PG5 sing 259 n n C1 H11 PG5 sing 260 n n C1 H12 PG5 sing 261 n n C1 H13 PG5 sing 262 n n O1 C2 PG5 sing 263 n n C2 C3 PG5 sing 264 n n C2 H21 PG5 sing 265 n n C2 H22 PG5 sing 266 n n C3 O2 PG5 sing 267 n n C3 H31 PG5 sing 268 n n C3 H32 PG5 sing 269 n n O2 C4 PG5 sing 270 n n C4 C5 PG5 sing 271 n n C4 H41 PG5 sing 272 n n C4 H42 PG5 sing 273 n n C5 O3 PG5 sing 274 n n C5 H51 PG5 sing 275 n n C5 H52 PG5 sing 276 n n O3 C6 PG5 sing 277 n n C6 C7 PG5 sing 278 n n C6 H61 PG5 sing 279 n n C6 H62 PG5 sing 280 n n C7 O4 PG5 sing 281 n n C7 H71 PG5 sing 282 n n C7 H72 PG5 sing 283 n n O4 C8 PG5 sing 284 n n C8 H81 PG5 sing 285 n n C8 H82 PG5 sing 286 n n C8 H83 PG5 sing 287 n n # _atom_sites.entry_id 5WIF _atom_sites.fract_transf_matrix[1][1] 0.009747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PG5 B 1 201 3 PG5 PG4 . E 3 PEG B 1 202 4 PEG PEG . F 4 K C 1 201 1 K K . G 5 BO3 C 1 202 2 BO3 BO3 . H 6 HOH A 1 201 22 HOH HOH . H 6 HOH A 2 202 36 HOH HOH . H 6 HOH A 3 203 31 HOH HOH . H 6 HOH A 4 204 34 HOH HOH . H 6 HOH A 5 205 37 HOH HOH . H 6 HOH A 6 206 35 HOH HOH . H 6 HOH A 7 207 38 HOH HOH . H 6 HOH A 8 208 19 HOH HOH . H 6 HOH A 9 209 14 HOH HOH . H 6 HOH A 10 210 17 HOH HOH . H 6 HOH A 11 211 21 HOH HOH . I 6 HOH B 1 301 9 HOH HOH . I 6 HOH B 2 302 12 HOH HOH . I 6 HOH B 3 303 10 HOH HOH . I 6 HOH B 4 304 11 HOH HOH . I 6 HOH B 5 305 13 HOH HOH . I 6 HOH B 6 306 33 HOH HOH . J 6 HOH C 1 301 6 HOH HOH . J 6 HOH C 2 302 18 HOH HOH . J 6 HOH C 3 303 23 HOH HOH . J 6 HOH C 4 304 40 HOH HOH . J 6 HOH C 5 305 20 HOH HOH . J 6 HOH C 6 306 29 HOH HOH . J 6 HOH C 7 307 8 HOH HOH . J 6 HOH C 8 308 16 HOH HOH . J 6 HOH C 9 309 28 HOH HOH . J 6 HOH C 10 310 3 HOH HOH . J 6 HOH C 11 311 2 HOH HOH . J 6 HOH C 12 312 7 HOH HOH . J 6 HOH C 13 313 5 HOH HOH . J 6 HOH C 14 314 15 HOH HOH . J 6 HOH C 15 315 24 HOH HOH . J 6 HOH C 16 316 1 HOH HOH . J 6 HOH C 17 317 32 HOH HOH . J 6 HOH C 18 318 27 HOH HOH . J 6 HOH C 19 319 26 HOH HOH . J 6 HOH C 20 320 39 HOH HOH . J 6 HOH C 21 321 30 HOH HOH . J 6 HOH C 22 322 4 HOH HOH . J 6 HOH C 23 323 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG5 . . . D 2 24.766 124.32 18.731 1 87.29 ? O1 PG5 201 B 1 HETATM 2 C C2 PG5 . . . D 2 23.765 124.25 19.766 1 97.11 ? C2 PG5 201 B 1 HETATM 3 C C3 PG5 . . . D 2 24.299 123.742 21.105 1 100.94 ? C3 PG5 201 B 1 HETATM 4 O O2 PG5 . . . D 2 23.583 122.561 21.511 1 102.76 ? O2 PG5 201 B 1 HETATM 5 C C4 PG5 . . . D 2 24.155 121.885 22.641 1 106.9 ? C4 PG5 201 B 1 HETATM 6 C C5 PG5 . . . D 2 24.186 120.362 22.438 1 110.82 ? C5 PG5 201 B 1 HETATM 7 O O3 PG5 . . . D 2 25.47 119.785 22.757 1 115.96 ? O3 PG5 201 B 1 HETATM 8 C C6 PG5 . . . D 2 25.864 119.803 24.144 1 113.44 ? C6 PG5 201 B 1 HETATM 9 C C7 PG5 . . . D 2 27.298 120.324 24.316 1 112.32 ? C7 PG5 201 B 1 HETATM 10 O O4 PG5 . . . D 2 27.68 120.351 25.699 1 94.38 ? O4 PG5 201 B 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #