data_5WIK # _model_server_result.job_id PkGTjp_EYdT7bQ1PBvY62g _model_server_result.datetime_utc '2024-11-13 06:05:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5WIK # _exptl.entry_id 5WIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIK _cell.length_a 57.125 _cell.length_b 60.844 _cell.length_c 89.724 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 F2 N5 O2' _chem_comp.formula_weight 391.415 _chem_comp.id 584 _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C7 584 sing 1 n n C10 C8 584 sing 2 n n C7 C11 584 sing 3 n n C7 C6 584 sing 4 n n C5 C6 584 sing 5 n n C5 N4 584 sing 6 n n C8 N4 584 sing 7 n n C8 C9 584 sing 8 n n N4 C2 584 sing 9 n n O1 C9 584 doub 10 n n O2 C17 584 sing 11 n n C9 N5 584 sing 12 n n F2 C18 584 sing 13 n n C17 C18 584 doub 14 n y C17 C16 584 sing 15 n y C18 C19 584 sing 16 n y C2 N2 584 doub 17 n y C2 C3 584 sing 18 n y N2 C1 584 sing 19 n y N5 C3 584 sing 20 n n N5 C13 584 sing 21 n n C16 F1 584 sing 22 n n C16 C15 584 doub 23 n y C19 C14 584 doub 24 n y C3 C4 584 doub 25 n y C15 C14 584 sing 26 n y C14 N3 584 sing 27 n n C1 N3 584 sing 28 n n C1 N1 584 doub 29 n y C4 N1 584 sing 30 n y O2 H1 584 sing 31 n n C11 H2 584 sing 32 n n C11 H3 584 sing 33 n n C11 H4 584 sing 34 n n C12 H5 584 sing 35 n n C12 H6 584 sing 36 n n C12 H7 584 sing 37 n n C13 H8 584 sing 38 n n C13 H9 584 sing 39 n n C13 H10 584 sing 40 n n C15 H11 584 sing 41 n n C19 H12 584 sing 42 n n C4 H13 584 sing 43 n n N3 H14 584 sing 44 n n C5 H15 584 sing 45 n n C5 H16 584 sing 46 n n C6 H17 584 sing 47 n n C6 H18 584 sing 48 n n C7 H19 584 sing 49 n n C8 H20 584 sing 50 n n C10 H21 584 sing 51 n n C10 H22 584 sing 52 n n C10 H23 584 sing 53 n n # _atom_sites.entry_id 5WIK _atom_sites.fract_transf_matrix[1][1] 0.017505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 584 B 1 901 1 584 DRG . C 3 HOH B 1 1001 20 HOH HOH . C 3 HOH B 2 1002 10 HOH HOH . C 3 HOH B 3 1003 8 HOH HOH . C 3 HOH B 4 1004 11 HOH HOH . C 3 HOH B 5 1005 3 HOH HOH . C 3 HOH B 6 1006 17 HOH HOH . C 3 HOH B 7 1007 19 HOH HOH . C 3 HOH B 8 1008 14 HOH HOH . C 3 HOH B 9 1009 2 HOH HOH . C 3 HOH B 10 1010 6 HOH HOH . C 3 HOH B 11 1011 12 HOH HOH . C 3 HOH B 12 1012 21 HOH HOH . C 3 HOH B 13 1013 9 HOH HOH . C 3 HOH B 14 1014 1 HOH HOH . C 3 HOH B 15 1015 4 HOH HOH . C 3 HOH B 16 1016 7 HOH HOH . C 3 HOH B 17 1017 15 HOH HOH . C 3 HOH B 18 1018 5 HOH HOH . C 3 HOH B 19 1019 18 HOH HOH . C 3 HOH B 20 1020 13 HOH HOH . C 3 HOH B 21 1021 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 584 . . . B 2 27.257 67.399 87.353 1 37.75 ? C1 584 901 B 1 HETATM 2 C C2 584 . . . B 2 25.946 66.809 89.223 1 47.13 ? C2 584 901 B 1 HETATM 3 C C3 584 . . . B 2 26.979 66.044 89.682 1 45.62 ? C3 584 901 B 1 HETATM 4 O O1 584 . . . B 2 25.615 64.723 92.745 1 51.65 ? O1 584 901 B 1 HETATM 5 O O2 584 . . . B 2 24.586 72.344 83.746 1 55.92 ? O2 584 901 B 1 HETATM 6 C C11 584 . . . B 2 22.064 70.257 88.365 1 49.9 ? C11 584 901 B 1 HETATM 7 C C12 584 . . . B 2 22.316 71.018 90.755 1 46.9 ? C12 584 901 B 1 HETATM 8 C C13 584 . . . B 2 27.964 64.54 91.348 1 39.76 ? C13 584 901 B 1 HETATM 9 C C14 584 . . . B 2 26.701 69.202 85.526 1 35.6 ? C14 584 901 B 1 HETATM 10 C C15 584 . . . B 2 25.762 69.911 86.262 1 40.04 ? C15 584 901 B 1 HETATM 11 C C16 584 . . . B 2 25.059 70.953 85.669 1 47.67 ? C16 584 901 B 1 HETATM 12 C C17 584 . . . B 2 25.295 71.292 84.344 1 44.25 ? C17 584 901 B 1 HETATM 13 C C18 584 . . . B 2 26.235 70.587 83.609 1 35.85 ? C18 584 901 B 1 HETATM 14 C C19 584 . . . B 2 26.935 69.55 84.202 1 40.57 ? C19 584 901 B 1 HETATM 15 N N1 584 . . . B 2 28.269 66.659 87.794 1 41.28 ? N1 584 901 B 1 HETATM 16 N N2 584 . . . B 2 26.115 67.481 88.035 1 41.21 ? N2 584 901 B 1 HETATM 17 C C4 584 . . . B 2 28.194 65.973 88.927 1 43.47 ? C4 584 901 B 1 HETATM 18 N N3 584 . . . B 2 27.477 68.099 86.084 1 39.89 ? N3 584 901 B 1 HETATM 19 N N4 584 . . . B 2 24.782 66.881 89.945 1 52.45 ? N4 584 901 B 1 HETATM 20 C C5 584 . . . B 2 23.669 67.687 89.448 1 50.49 ? C5 584 901 B 1 HETATM 21 C C6 584 . . . B 2 23.774 69.158 89.866 1 46.95 ? C6 584 901 B 1 HETATM 22 C C7 584 . . . B 2 22.401 69.834 89.795 1 47.85 ? C7 584 901 B 1 HETATM 23 C C8 584 . . . B 2 24.659 66.205 91.09 1 58.3 ? C8 584 901 B 1 HETATM 24 C C9 584 . . . B 2 25.731 65.43 91.546 1 54 ? C9 584 901 B 1 HETATM 25 N N5 584 . . . B 2 26.862 65.353 90.856 1 48.49 ? N5 584 901 B 1 HETATM 26 C C10 584 . . . B 2 23.37 66.267 91.911 1 69.4 ? C10 584 901 B 1 HETATM 27 F F1 584 . . . B 2 24.132 71.648 86.389 1 57.28 ? F1 584 901 B 1 HETATM 28 F F2 584 . . . B 2 26.471 70.915 82.306 1 47.92 ? F2 584 901 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #