data_5WIM # _model_server_result.job_id 9d6HcbXhOST4xZP1pynlZA _model_server_result.datetime_utc '2024-11-13 05:18:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5WIM # _exptl.entry_id 5WIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIM _cell.length_a 57.791 _cell.length_b 60.687 _cell.length_c 89.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N7 O2' _chem_comp.formula_weight 381.432 _chem_comp.id 35R _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 35R doub 1 n y C17 C16 35R sing 2 n y C18 C19 35R sing 3 n y C27 C26 35R sing 4 n n C27 N21 35R sing 5 n n C26 O25 35R sing 6 n n C16 N15 35R sing 7 n y C16 C29 35R doub 8 n y C19 C20 35R sing 9 n n C19 C28 35R doub 10 n y C20 N21 35R sing 11 n n N21 C23 35R sing 12 n n N15 C14 35R sing 13 n y C29 C28 35R sing 14 n y C29 N30 35R sing 15 n y O25 C24 35R sing 16 n n C14 N30 35R doub 17 n y C14 C13 35R sing 18 n n N12 C13 35R doub 19 n y N12 N10 35R sing 20 n y C23 C24 35R sing 21 n n C13 C8 35R sing 22 n y N10 C9 35R sing 23 n y C8 C9 35R doub 24 n y C8 N7 35R sing 25 n n N7 C2 35R sing 26 n n C5 C4 35R sing 27 n n C5 C6 35R sing 28 n n C4 N3 35R sing 29 n n C4 C6 35R sing 30 n n C2 O1 35R doub 31 n n C2 N3 35R sing 32 n n N3 H1 35R sing 33 n n C4 H2 35R sing 34 n n C5 H3 35R sing 35 n n C5 H4 35R sing 36 n n C6 H5 35R sing 37 n n C6 H6 35R sing 38 n n N7 H7 35R sing 39 n n C9 H8 35R sing 40 n n N10 H9 35R sing 41 n n N15 H10 35R sing 42 n n C17 H11 35R sing 43 n n C18 H12 35R sing 44 n n C20 H13 35R sing 45 n n C20 H14 35R sing 46 n n C23 H16 35R sing 47 n n C23 H17 35R sing 48 n n C24 H18 35R sing 49 n n C24 H19 35R sing 50 n n C26 H20 35R sing 51 n n C26 H21 35R sing 52 n n C27 H22 35R sing 53 n n C27 H23 35R sing 54 n n C28 H24 35R sing 55 n n # _atom_sites.entry_id 5WIM _atom_sites.fract_transf_matrix[1][1] 0.017304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 35R A 1 901 1 35R L0I . C 3 HOH A 1 1001 22 HOH HOH . C 3 HOH A 2 1002 14 HOH HOH . C 3 HOH A 3 1003 6 HOH HOH . C 3 HOH A 4 1004 12 HOH HOH . C 3 HOH A 5 1005 1 HOH HOH . C 3 HOH A 6 1006 21 HOH HOH . C 3 HOH A 7 1007 4 HOH HOH . C 3 HOH A 8 1008 2 HOH HOH . C 3 HOH A 9 1009 19 HOH HOH . C 3 HOH A 10 1010 17 HOH HOH . C 3 HOH A 11 1011 3 HOH HOH . C 3 HOH A 12 1012 10 HOH HOH . C 3 HOH A 13 1013 5 HOH HOH . C 3 HOH A 14 1014 20 HOH HOH . C 3 HOH A 15 1015 9 HOH HOH . C 3 HOH A 16 1016 7 HOH HOH . C 3 HOH A 17 1017 16 HOH HOH . C 3 HOH A 18 1018 8 HOH HOH . C 3 HOH A 19 1019 11 HOH HOH . C 3 HOH A 20 1020 13 HOH HOH . C 3 HOH A 21 1021 15 HOH HOH . C 3 HOH A 22 1022 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 35R . . . B 2 -5.524 -6.823 -1.079 1 39.62 ? O1 35R 901 A 1 HETATM 2 C C2 35R . . . B 2 -4.488 -6.243 -1.022 1 44.22 ? C2 35R 901 A 1 HETATM 3 N N3 35R . . . B 2 -4.088 -5.229 -2.012 1 39.44 ? N3 35R 901 A 1 HETATM 4 C C4 35R . . . B 2 -4.885 -4.778 -3.171 1 71.18 ? C4 35R 901 A 1 HETATM 5 C C5 35R . . . B 2 -6.176 -5.509 -3.59 1 64.7 ? C5 35R 901 A 1 HETATM 6 C C6 35R . . . B 2 -6.265 -4.201 -2.801 1 52.32 ? C6 35R 901 A 1 HETATM 7 N N7 35R . . . B 2 -3.6 -6.593 0.091 1 51.71 ? N7 35R 901 A 1 HETATM 8 C C8 35R . . . B 2 -2.282 -6.007 0.362 1 38.3 ? C8 35R 901 A 1 HETATM 9 C C9 35R . . . B 2 -1.598 -5.063 -0.36 1 34.25 ? C9 35R 901 A 1 HETATM 10 N N10 35R . . . B 2 -0.384 -4.81 0.312 1 36.38 ? N10 35R 901 A 1 HETATM 11 N N12 35R . . . B 2 -0.344 -5.619 1.468 1 33.65 ? N12 35R 901 A 1 HETATM 12 C C13 35R . . . B 2 -1.506 -6.337 1.517 1 30.12 ? C13 35R 901 A 1 HETATM 13 C C14 35R . . . B 2 -1.935 -7.389 2.561 1 30.94 ? C14 35R 901 A 1 HETATM 14 N N15 35R . . . B 2 -2.96 -8.262 2.343 1 37.68 ? N15 35R 901 A 1 HETATM 15 C C16 35R . . . B 2 -2.965 -9.093 3.636 1 37.43 ? C16 35R 901 A 1 HETATM 16 C C17 35R . . . B 2 -3.745 -10.155 4.105 1 55.21 ? C17 35R 901 A 1 HETATM 17 C C18 35R . . . B 2 -3.455 -10.691 5.383 1 46.08 ? C18 35R 901 A 1 HETATM 18 C C19 35R . . . B 2 -2.418 -10.169 6.191 1 36.73 ? C19 35R 901 A 1 HETATM 19 C C20 35R . . . B 2 -2.122 -10.807 7.581 1 45.06 ? C20 35R 901 A 1 HETATM 20 N N21 35R . . . B 2 -2.802 -10.237 8.745 1 55.23 ? N21 35R 901 A 1 HETATM 21 C C23 35R . . . B 2 -3.766 -9.21 8.424 1 54.27 ? C23 35R 901 A 1 HETATM 22 C C24 35R . . . B 2 -4.399 -8.666 9.687 1 54.99 ? C24 35R 901 A 1 HETATM 23 O O25 35R . . . B 2 -4.009 -9.344 10.833 1 64.56 ? O25 35R 901 A 1 HETATM 24 C C26 35R . . . B 2 -4.241 -10.731 10.715 1 49.92 ? C26 35R 901 A 1 HETATM 25 C C27 35R . . . B 2 -3.481 -11.33 9.472 1 65.46 ? C27 35R 901 A 1 HETATM 26 C C28 35R . . . B 2 -1.64 -9.115 5.698 1 38.45 ? C28 35R 901 A 1 HETATM 27 C C29 35R . . . B 2 -1.903 -8.579 4.455 1 35.58 ? C29 35R 901 A 1 HETATM 28 N N30 35R . . . B 2 -1.435 -7.647 3.71 1 34.47 ? N30 35R 901 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #