data_5WIU # _model_server_result.job_id '_NWDZvvUjHDqHo2f2_jUcQ' _model_server_result.datetime_utc '2024-11-25 10:45:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5WIU # _exptl.entry_id 5WIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.903 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Nemonapride _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIU _cell.length_a 67.688 _cell.length_b 164.047 _cell.length_c 84.129 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 112 A CYS 108 1_555 A SG CYS 189 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 375 A CYS 420 1_555 A SG CYS 378 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C21 H26 Cl N3 O2' _chem_comp.formula_weight 387.903 _chem_comp.id AQD _chem_comp.mon_nstd_flag . _chem_comp.name Nemonapride _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-[(2R,3R)-1-benzyl-2-methylpyrrolidin-3-yl]-5-chloro-2-methoxy-4-(methylamino)benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAI AQD doub 13 n y CAG CAF AQD sing 14 n y CAI CAT AQD sing 15 n y CAF CAH AQD doub 16 n y CAT CAO AQD sing 17 n n CAT CAJ AQD doub 18 n y CAO NBA AQD sing 19 n n CAH CAJ AQD sing 20 n y CAC CAY AQD sing 21 n n CAY NBA AQD sing 22 n n CAY CAZ AQD sing 23 n n NBA CAN AQD sing 24 n n CAN CAM AQD sing 25 n n CAZ CAM AQD sing 26 n n CAZ NAQ AQD sing 27 n n NAQ CAS AQD sing 28 n n CAB OAR AQD sing 29 n n OAR CAW AQD sing 30 n n CAS OAD AQD doub 31 n n CAS CAX AQD sing 32 n n CAW CAX AQD doub 33 n y CAW CAK AQD sing 34 n y CAX CAL AQD sing 35 n y CAK CAV AQD doub 36 n y CAL CAU AQD doub 37 n y CAV CAU AQD sing 38 n y CAV NAP AQD sing 39 n n CAU CLA AQD sing 40 n n NAP CAA AQD sing 41 n n CAB H1 AQD sing 42 n n CAB H2 AQD sing 43 n n CAB H3 AQD sing 44 n n CAK H4 AQD sing 45 n n NAP H5 AQD sing 46 n n CAA H6 AQD sing 47 n n CAA H7 AQD sing 48 n n CAA H8 AQD sing 49 n n CAL H9 AQD sing 50 n n NAQ H10 AQD sing 51 n n CAZ H11 AQD sing 52 n n CAY H12 AQD sing 53 n n CAC H13 AQD sing 54 n n CAC H14 AQD sing 55 n n CAC H15 AQD sing 56 n n CAM H16 AQD sing 57 n n CAM H17 AQD sing 58 n n CAN H18 AQD sing 59 n n CAN H19 AQD sing 60 n n CAO H21 AQD sing 61 n n CAO H22 AQD sing 62 n n CAI H23 AQD sing 63 n n CAG H24 AQD sing 64 n n CAF H25 AQD sing 65 n n CAH H26 AQD sing 66 n n CAJ H27 AQD sing 67 n n # _atom_sites.entry_id 5WIU _atom_sites.fract_transf_matrix[1][1] 0.014774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AQD A 1 1201 1 AQD DRG . C 3 PO4 A 1 1202 1 PO4 PO4 . D 3 PO4 A 1 1203 2 PO4 PO4 . E 3 PO4 A 1 1204 3 PO4 PO4 . F 4 OLA A 1 1205 2009 OLA OLA . G 4 OLA A 1 1206 2010 OLA OLA . H 4 OLA A 1 1207 2011 OLA OLA . I 4 OLA A 1 1208 2012 OLA OLA . J 4 OLA A 1 1209 2013 OLA OLA . K 4 OLA A 1 1210 2014 OLA OLA . L 4 OLA A 1 1211 2015 OLA OLA . M 4 OLA A 1 1212 2017 OLA OLA . N 4 OLA A 1 1213 2018 OLA OLA . O 5 PEG A 1 1214 2013 PEG PEG . P 5 PEG A 1 1215 2014 PEG PEG . Q 5 PEG A 1 1216 2017 PEG PEG . R 5 PEG A 1 1217 2018 PEG PEG . S 5 PEG A 1 1218 2019 PEG PEG . T 5 PEG A 1 1219 2020 PEG PEG . U 5 PEG A 1 1220 2021 PEG PEG . V 5 PEG A 1 1221 2022 PEG PEG . W 5 PEG A 1 1222 2023 PEG PEG . X 6 GOL A 1 1223 1 GOL GOL . Y 7 HOH A 1 1301 127 HOH HOH . Y 7 HOH A 2 1302 26 HOH HOH . Y 7 HOH A 3 1303 34 HOH HOH . Y 7 HOH A 4 1304 115 HOH HOH . Y 7 HOH A 5 1305 73 HOH HOH . Y 7 HOH A 6 1306 130 HOH HOH . Y 7 HOH A 7 1307 16 HOH HOH . Y 7 HOH A 8 1308 112 HOH HOH . Y 7 HOH A 9 1309 56 HOH HOH . Y 7 HOH A 10 1310 96 HOH HOH . Y 7 HOH A 11 1311 52 HOH HOH . Y 7 HOH A 12 1312 64 HOH HOH . Y 7 HOH A 13 1313 33 HOH HOH . Y 7 HOH A 14 1314 32 HOH HOH . Y 7 HOH A 15 1315 100 HOH HOH . Y 7 HOH A 16 1316 92 HOH HOH . Y 7 HOH A 17 1317 105 HOH HOH . Y 7 HOH A 18 1318 1 HOH HOH . Y 7 HOH A 19 1319 39 HOH HOH . Y 7 HOH A 20 1320 17 HOH HOH . Y 7 HOH A 21 1321 74 HOH HOH . Y 7 HOH A 22 1322 103 HOH HOH . Y 7 HOH A 23 1323 63 HOH HOH . Y 7 HOH A 24 1324 7 HOH HOH . Y 7 HOH A 25 1325 108 HOH HOH . Y 7 HOH A 26 1326 19 HOH HOH . Y 7 HOH A 27 1327 84 HOH HOH . Y 7 HOH A 28 1328 15 HOH HOH . Y 7 HOH A 29 1329 125 HOH HOH . Y 7 HOH A 30 1330 22 HOH HOH . Y 7 HOH A 31 1331 41 HOH HOH . Y 7 HOH A 32 1332 72 HOH HOH . Y 7 HOH A 33 1333 89 HOH HOH . Y 7 HOH A 34 1334 123 HOH HOH . Y 7 HOH A 35 1335 95 HOH HOH . Y 7 HOH A 36 1336 49 HOH HOH . Y 7 HOH A 37 1337 119 HOH HOH . Y 7 HOH A 38 1338 5 HOH HOH . Y 7 HOH A 39 1339 97 HOH HOH . Y 7 HOH A 40 1340 44 HOH HOH . Y 7 HOH A 41 1341 83 HOH HOH . Y 7 HOH A 42 1342 86 HOH HOH . Y 7 HOH A 43 1343 82 HOH HOH . Y 7 HOH A 44 1344 90 HOH HOH . Y 7 HOH A 45 1345 37 HOH HOH . Y 7 HOH A 46 1346 8 HOH HOH . Y 7 HOH A 47 1347 114 HOH HOH . Y 7 HOH A 48 1348 43 HOH HOH . Y 7 HOH A 49 1349 28 HOH HOH . Y 7 HOH A 50 1350 25 HOH HOH . Y 7 HOH A 51 1351 23 HOH HOH . Y 7 HOH A 52 1352 69 HOH HOH . Y 7 HOH A 53 1353 11 HOH HOH . Y 7 HOH A 54 1354 54 HOH HOH . Y 7 HOH A 55 1355 36 HOH HOH . Y 7 HOH A 56 1356 13 HOH HOH . Y 7 HOH A 57 1357 60 HOH HOH . Y 7 HOH A 58 1358 29 HOH HOH . Y 7 HOH A 59 1359 46 HOH HOH . Y 7 HOH A 60 1360 38 HOH HOH . Y 7 HOH A 61 1361 67 HOH HOH . Y 7 HOH A 62 1362 68 HOH HOH . Y 7 HOH A 63 1363 118 HOH HOH . Y 7 HOH A 64 1364 14 HOH HOH . Y 7 HOH A 65 1365 106 HOH HOH . Y 7 HOH A 66 1366 12 HOH HOH . Y 7 HOH A 67 1367 70 HOH HOH . Y 7 HOH A 68 1368 71 HOH HOH . Y 7 HOH A 69 1369 24 HOH HOH . Y 7 HOH A 70 1370 85 HOH HOH . Y 7 HOH A 71 1371 129 HOH HOH . Y 7 HOH A 72 1372 10 HOH HOH . Y 7 HOH A 73 1373 107 HOH HOH . Y 7 HOH A 74 1374 18 HOH HOH . Y 7 HOH A 75 1375 91 HOH HOH . Y 7 HOH A 76 1376 27 HOH HOH . Y 7 HOH A 77 1377 57 HOH HOH . Y 7 HOH A 78 1378 101 HOH HOH . Y 7 HOH A 79 1379 126 HOH HOH . Y 7 HOH A 80 1380 50 HOH HOH . Y 7 HOH A 81 1381 35 HOH HOH . Y 7 HOH A 82 1382 122 HOH HOH . Y 7 HOH A 83 1383 121 HOH HOH . Y 7 HOH A 84 1384 113 HOH HOH . Y 7 HOH A 85 1385 81 HOH HOH . Y 7 HOH A 86 1386 21 HOH HOH . Y 7 HOH A 87 1387 78 HOH HOH . Y 7 HOH A 88 1388 80 HOH HOH . Y 7 HOH A 89 1389 111 HOH HOH . Y 7 HOH A 90 1390 20 HOH HOH . Y 7 HOH A 91 1391 77 HOH HOH . Y 7 HOH A 92 1392 48 HOH HOH . Y 7 HOH A 93 1393 128 HOH HOH . Y 7 HOH A 94 1394 102 HOH HOH . Y 7 HOH A 95 1395 98 HOH HOH . Y 7 HOH A 96 1396 76 HOH HOH . Y 7 HOH A 97 1397 4 HOH HOH . Y 7 HOH A 98 1398 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB AQD . . . B 2 -16.765 11.793 -16.344 1 26.89 ? CAB AQD 1201 A 1 HETATM 2 O OAR AQD . . . B 2 -16.479 13.184 -16.085 1 31.19 ? OAR AQD 1201 A 1 HETATM 3 C CAW AQD . . . B 2 -15.615 13.449 -14.994 1 27.18 ? CAW AQD 1201 A 1 HETATM 4 C CAK AQD . . . B 2 -15.231 12.434 -14.098 1 32.67 ? CAK AQD 1201 A 1 HETATM 5 C CAV AQD . . . B 2 -14.376 12.763 -13.031 1 27.75 ? CAV AQD 1201 A 1 HETATM 6 N NAP AQD . . . B 2 -13.96 11.763 -12.096 1 31.76 ? NAP AQD 1201 A 1 HETATM 7 C CAA AQD . . . B 2 -14.651 10.489 -12.085 1 29.8 ? CAA AQD 1201 A 1 HETATM 8 C CAU AQD . . . B 2 -13.891 14.071 -12.887 1 35.13 ? CAU AQD 1201 A 1 HETATM 9 CL CLA AQD . . . B 2 -12.777 14.49 -11.593 1 41.84 ? CLA AQD 1201 A 1 HETATM 10 C CAL AQD . . . B 2 -14.265 15.058 -13.78 1 32.2 ? CAL AQD 1201 A 1 HETATM 11 C CAX AQD . . . B 2 -15.118 14.748 -14.834 1 28.31 ? CAX AQD 1201 A 1 HETATM 12 C CAS AQD . . . B 2 -15.526 15.904 -15.744 1 33.92 ? CAS AQD 1201 A 1 HETATM 13 O OAD AQD . . . B 2 -14.929 16.95 -15.642 1 36.55 ? OAD AQD 1201 A 1 HETATM 14 N NAQ AQD . . . B 2 -16.638 15.809 -16.648 1 34.47 ? NAQ AQD 1201 A 1 HETATM 15 C CAZ AQD . . . B 2 -16.997 16.959 -17.469 1 40.86 ? CAZ AQD 1201 A 1 HETATM 16 C CAY AQD . . . B 2 -17.416 16.578 -18.817 1 51.93 ? CAY AQD 1201 A 1 HETATM 17 C CAC AQD . . . B 2 -16.699 15.29 -19.32 1 33.08 ? CAC AQD 1201 A 1 HETATM 18 C CAM AQD . . . B 2 -18.166 17.653 -16.797 1 41.57 ? CAM AQD 1201 A 1 HETATM 19 C CAN AQD . . . B 2 -19.349 17.39 -17.881 1 61.28 ? CAN AQD 1201 A 1 HETATM 20 N NBA AQD . . . B 2 -18.795 16.355 -18.773 1 60.99 ? NBA AQD 1201 A 1 HETATM 21 C CAO AQD . . . B 2 -19.331 16.401 -20.098 1 68.84 ? CAO AQD 1201 A 1 HETATM 22 C CAT AQD . . . B 2 -20.852 16.758 -20.138 1 54.5 ? CAT AQD 1201 A 1 HETATM 23 C CAI AQD . . . B 2 -21.259 18.001 -20.632 1 53.54 ? CAI AQD 1201 A 1 HETATM 24 C CAG AQD . . . B 2 -22.616 18.335 -20.665 1 59.38 ? CAG AQD 1201 A 1 HETATM 25 C CAF AQD . . . B 2 -23.565 17.421 -20.21 1 61.98 ? CAF AQD 1201 A 1 HETATM 26 C CAH AQD . . . B 2 -23.166 16.184 -19.721 1 69.04 ? CAH AQD 1201 A 1 HETATM 27 C CAJ AQD . . . B 2 -21.806 15.847 -19.682 1 58.81 ? CAJ AQD 1201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #