data_5WIV # _model_server_result.job_id RMbUBlcntNtwaIghqOWaBw _model_server_result.datetime_utc '2024-10-19 03:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5WIV # _exptl.entry_id 5WIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.903 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Nemonapride _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIV _cell.length_a 67.861 _cell.length_b 162.836 _cell.length_c 83.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 112 A CYS 108 1_555 A SG CYS 189 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 375 A CYS 420 1_555 A SG CYS 378 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc1 A OD1 ASP 84 A ASP 80 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A OG SER 126 A SER 122 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C21 H26 Cl N3 O2' _chem_comp.formula_weight 387.903 _chem_comp.id AQD _chem_comp.mon_nstd_flag . _chem_comp.name Nemonapride _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-[(2R,3R)-1-benzyl-2-methylpyrrolidin-3-yl]-5-chloro-2-methoxy-4-(methylamino)benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAI AQD doub 13 n y CAG CAF AQD sing 14 n y CAI CAT AQD sing 15 n y CAF CAH AQD doub 16 n y CAT CAO AQD sing 17 n n CAT CAJ AQD doub 18 n y CAO NBA AQD sing 19 n n CAH CAJ AQD sing 20 n y CAC CAY AQD sing 21 n n CAY NBA AQD sing 22 n n CAY CAZ AQD sing 23 n n NBA CAN AQD sing 24 n n CAN CAM AQD sing 25 n n CAZ CAM AQD sing 26 n n CAZ NAQ AQD sing 27 n n NAQ CAS AQD sing 28 n n CAB OAR AQD sing 29 n n OAR CAW AQD sing 30 n n CAS OAD AQD doub 31 n n CAS CAX AQD sing 32 n n CAW CAX AQD doub 33 n y CAW CAK AQD sing 34 n y CAX CAL AQD sing 35 n y CAK CAV AQD doub 36 n y CAL CAU AQD doub 37 n y CAV CAU AQD sing 38 n y CAV NAP AQD sing 39 n n CAU CLA AQD sing 40 n n NAP CAA AQD sing 41 n n CAB H1 AQD sing 42 n n CAB H2 AQD sing 43 n n CAB H3 AQD sing 44 n n CAK H4 AQD sing 45 n n NAP H5 AQD sing 46 n n CAA H6 AQD sing 47 n n CAA H7 AQD sing 48 n n CAA H8 AQD sing 49 n n CAL H9 AQD sing 50 n n NAQ H10 AQD sing 51 n n CAZ H11 AQD sing 52 n n CAY H12 AQD sing 53 n n CAC H13 AQD sing 54 n n CAC H14 AQD sing 55 n n CAC H15 AQD sing 56 n n CAM H16 AQD sing 57 n n CAM H17 AQD sing 58 n n CAN H18 AQD sing 59 n n CAN H19 AQD sing 60 n n CAO H21 AQD sing 61 n n CAO H22 AQD sing 62 n n CAI H23 AQD sing 63 n n CAG H24 AQD sing 64 n n CAF H25 AQD sing 65 n n CAH H26 AQD sing 66 n n CAJ H27 AQD sing 67 n n # _atom_sites.entry_id 5WIV _atom_sites.fract_transf_matrix[1][1] 0.014736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AQD A 1 1201 1 AQD DRG . C 3 PO4 A 1 1202 1 PO4 PO4 . D 3 PO4 A 1 1203 2 PO4 PO4 . E 3 PO4 A 1 1204 3 PO4 PO4 . F 3 PO4 A 1 1205 4 PO4 PO4 . G 3 PO4 A 1 1206 5 PO4 PO4 . H 4 OLA A 1 1207 2009 OLA OLA . I 4 OLA A 1 1208 2010 OLA OLA . J 4 OLA A 1 1209 2012 OLA OLA . K 4 OLA A 1 1210 2013 OLA OLA . L 4 OLA A 1 1211 2014 OLA OLA . M 4 OLA A 1 1212 2015 OLA OLA . N 4 OLA A 1 1213 2017 OLA OLA . O 4 OLA A 1 1214 2018 OLA OLA . P 5 PEG A 1 1215 2013 PEG PEG . Q 5 PEG A 1 1216 2014 PEG PEG . R 5 PEG A 1 1217 2017 PEG PEG . S 5 PEG A 1 1218 2018 PEG PEG . T 5 PEG A 1 1219 2019 PEG PEG . U 5 PEG A 1 1220 2020 PEG PEG . V 5 PEG A 1 1221 2021 PEG PEG . W 5 PEG A 1 1222 2022 PEG PEG . X 5 PEG A 1 1223 2023 PEG PEG . Y 6 NA A 1 1224 1 NA NA . Z 7 HOH A 1 1301 193 HOH HOH . Z 7 HOH A 2 1302 127 HOH HOH . Z 7 HOH A 3 1303 150 HOH HOH . Z 7 HOH A 4 1304 26 HOH HOH . Z 7 HOH A 5 1305 186 HOH HOH . Z 7 HOH A 6 1306 169 HOH HOH . Z 7 HOH A 7 1307 90 HOH HOH . Z 7 HOH A 8 1308 181 HOH HOH . Z 7 HOH A 9 1309 180 HOH HOH . Z 7 HOH A 10 1310 22 HOH HOH . Z 7 HOH A 11 1311 1 HOH HOH . Z 7 HOH A 12 1312 60 HOH HOH . Z 7 HOH A 13 1313 17 HOH HOH . Z 7 HOH A 14 1314 7 HOH HOH . Z 7 HOH A 15 1315 56 HOH HOH . Z 7 HOH A 16 1316 179 HOH HOH . Z 7 HOH A 17 1317 18 HOH HOH . Z 7 HOH A 18 1318 194 HOH HOH . Z 7 HOH A 19 1319 11 HOH HOH . Z 7 HOH A 20 1320 5 HOH HOH . Z 7 HOH A 21 1321 19 HOH HOH . Z 7 HOH A 22 1322 24 HOH HOH . Z 7 HOH A 23 1323 37 HOH HOH . Z 7 HOH A 24 1324 106 HOH HOH . Z 7 HOH A 25 1325 176 HOH HOH . Z 7 HOH A 26 1326 196 HOH HOH . Z 7 HOH A 27 1327 35 HOH HOH . Z 7 HOH A 28 1328 34 HOH HOH . Z 7 HOH A 29 1329 190 HOH HOH . Z 7 HOH A 30 1330 185 HOH HOH . Z 7 HOH A 31 1331 83 HOH HOH . Z 7 HOH A 32 1332 153 HOH HOH . Z 7 HOH A 33 1333 15 HOH HOH . Z 7 HOH A 34 1334 36 HOH HOH . Z 7 HOH A 35 1335 43 HOH HOH . Z 7 HOH A 36 1336 32 HOH HOH . Z 7 HOH A 37 1337 12 HOH HOH . Z 7 HOH A 38 1338 113 HOH HOH . Z 7 HOH A 39 1339 69 HOH HOH . Z 7 HOH A 40 1340 178 HOH HOH . Z 7 HOH A 41 1341 28 HOH HOH . Z 7 HOH A 42 1342 33 HOH HOH . Z 7 HOH A 43 1343 175 HOH HOH . Z 7 HOH A 44 1344 13 HOH HOH . Z 7 HOH A 45 1345 58 HOH HOH . Z 7 HOH A 46 1346 10 HOH HOH . Z 7 HOH A 47 1347 162 HOH HOH . Z 7 HOH A 48 1348 197 HOH HOH . Z 7 HOH A 49 1349 27 HOH HOH . Z 7 HOH A 50 1350 8 HOH HOH . Z 7 HOH A 51 1351 20 HOH HOH . Z 7 HOH A 52 1352 111 HOH HOH . Z 7 HOH A 53 1353 57 HOH HOH . Z 7 HOH A 54 1354 95 HOH HOH . Z 7 HOH A 55 1355 48 HOH HOH . Z 7 HOH A 56 1356 76 HOH HOH . Z 7 HOH A 57 1357 14 HOH HOH . Z 7 HOH A 58 1358 122 HOH HOH . Z 7 HOH A 59 1359 73 HOH HOH . Z 7 HOH A 60 1360 192 HOH HOH . Z 7 HOH A 61 1361 21 HOH HOH . Z 7 HOH A 62 1362 81 HOH HOH . Z 7 HOH A 63 1363 195 HOH HOH . Z 7 HOH A 64 1364 184 HOH HOH . Z 7 HOH A 65 1365 110 HOH HOH . Z 7 HOH A 66 1366 4 HOH HOH . Z 7 HOH A 67 1367 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB AQD . . . B 2 -16.627 11.742 -16.233 1 42.29 ? CAB AQD 1201 A 1 HETATM 2 O OAR AQD . . . B 2 -16.488 13.12 -15.868 1 41.23 ? OAR AQD 1201 A 1 HETATM 3 C CAW AQD . . . B 2 -15.61 13.402 -14.79 1 39.88 ? CAW AQD 1201 A 1 HETATM 4 C CAK AQD . . . B 2 -15.223 12.392 -13.905 1 40.57 ? CAK AQD 1201 A 1 HETATM 5 C CAV AQD . . . B 2 -14.344 12.722 -12.864 1 40.45 ? CAV AQD 1201 A 1 HETATM 6 N NAP AQD . . . B 2 -13.932 11.709 -11.911 1 36.62 ? NAP AQD 1201 A 1 HETATM 7 C CAA AQD . . . B 2 -14.593 10.429 -11.899 1 39.23 ? CAA AQD 1201 A 1 HETATM 8 C CAU AQD . . . B 2 -13.852 14.017 -12.733 1 44.41 ? CAU AQD 1201 A 1 HETATM 9 CL CLA AQD . . . B 2 -12.726 14.393 -11.433 1 48.49 ? CLA AQD 1201 A 1 HETATM 10 C CAL AQD . . . B 2 -14.221 15.02 -13.624 1 40.73 ? CAL AQD 1201 A 1 HETATM 11 C CAX AQD . . . B 2 -15.092 14.687 -14.66 1 42.92 ? CAX AQD 1201 A 1 HETATM 12 C CAS AQD . . . B 2 -15.511 15.805 -15.593 1 44.16 ? CAS AQD 1201 A 1 HETATM 13 O OAD AQD . . . B 2 -14.895 16.843 -15.565 1 45.82 ? OAD AQD 1201 A 1 HETATM 14 N NAQ AQD . . . B 2 -16.65 15.693 -16.453 1 50.47 ? NAQ AQD 1201 A 1 HETATM 15 C CAZ AQD . . . B 2 -16.966 16.858 -17.254 1 49.31 ? CAZ AQD 1201 A 1 HETATM 16 C CAY AQD . . . B 2 -17.437 16.514 -18.591 1 51.08 ? CAY AQD 1201 A 1 HETATM 17 C CAC AQD . . . B 2 -16.762 15.236 -19.16 1 44.93 ? CAC AQD 1201 A 1 HETATM 18 C CAM AQD . . . B 2 -18.099 17.568 -16.526 1 51.4 ? CAM AQD 1201 A 1 HETATM 19 C CAN AQD . . . B 2 -19.32 17.35 -17.578 1 48.39 ? CAN AQD 1201 A 1 HETATM 20 N NBA AQD . . . B 2 -18.813 16.299 -18.478 1 53.14 ? NBA AQD 1201 A 1 HETATM 21 C CAO AQD . . . B 2 -19.378 16.32 -19.788 1 60.83 ? CAO AQD 1201 A 1 HETATM 22 C CAT AQD . . . B 2 -20.875 16.743 -19.819 1 60.52 ? CAT AQD 1201 A 1 HETATM 23 C CAI AQD . . . B 2 -21.222 18.005 -20.3 1 55.97 ? CAI AQD 1201 A 1 HETATM 24 C CAG AQD . . . B 2 -22.563 18.389 -20.332 1 62.89 ? CAG AQD 1201 A 1 HETATM 25 C CAF AQD . . . B 2 -23.552 17.508 -19.899 1 62.19 ? CAF AQD 1201 A 1 HETATM 26 C CAH AQD . . . B 2 -23.208 16.246 -19.429 1 67.73 ? CAH AQD 1201 A 1 HETATM 27 C CAJ AQD . . . B 2 -21.864 15.855 -19.389 1 61.98 ? CAJ AQD 1201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #