data_5WIV # _model_server_result.job_id SbPT8O0z1YGkSNzC4_UWCQ _model_server_result.datetime_utc '2024-11-25 12:28:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1209}' # _entry.id 5WIV # _exptl.entry_id 5WIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIV _cell.length_a 67.861 _cell.length_b 162.836 _cell.length_c 83.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 112 A CYS 108 1_555 A SG CYS 189 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 375 A CYS 420 1_555 A SG CYS 378 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc1 A OD1 ASP 84 A ASP 80 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A OG SER 126 A SER 122 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 292 n n C1 O2 OLA sing 293 n n C1 C2 OLA sing 294 n n O2 HO2 OLA sing 295 n n C2 C3 OLA sing 296 n n C2 H21 OLA sing 297 n n C2 H22 OLA sing 298 n n C3 C4 OLA sing 299 n n C3 H31 OLA sing 300 n n C3 H32 OLA sing 301 n n C4 C5 OLA sing 302 n n C4 H41 OLA sing 303 n n C4 H42 OLA sing 304 n n C5 C6 OLA sing 305 n n C5 H51 OLA sing 306 n n C5 H52 OLA sing 307 n n C6 C7 OLA sing 308 n n C6 H61 OLA sing 309 n n C6 H62 OLA sing 310 n n C7 C8 OLA sing 311 n n C7 H71 OLA sing 312 n n C7 H72 OLA sing 313 n n C8 C9 OLA sing 314 n n C8 H81 OLA sing 315 n n C8 H82 OLA sing 316 n n C9 C10 OLA doub 317 z n C9 H9 OLA sing 318 n n C10 C11 OLA sing 319 n n C10 H10 OLA sing 320 n n C11 C12 OLA sing 321 n n C11 H111 OLA sing 322 n n C11 H112 OLA sing 323 n n C12 C13 OLA sing 324 n n C12 H121 OLA sing 325 n n C12 H122 OLA sing 326 n n C13 C14 OLA sing 327 n n C13 H131 OLA sing 328 n n C13 H132 OLA sing 329 n n C14 C15 OLA sing 330 n n C14 H141 OLA sing 331 n n C14 H142 OLA sing 332 n n C15 C16 OLA sing 333 n n C15 H151 OLA sing 334 n n C15 H152 OLA sing 335 n n C16 C17 OLA sing 336 n n C16 H161 OLA sing 337 n n C16 H162 OLA sing 338 n n C17 C18 OLA sing 339 n n C17 H171 OLA sing 340 n n C17 H172 OLA sing 341 n n C18 H181 OLA sing 342 n n C18 H182 OLA sing 343 n n C18 H183 OLA sing 344 n n # _atom_sites.entry_id 5WIV _atom_sites.fract_transf_matrix[1][1] 0.014736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AQD A 1 1201 1 AQD DRG . C 3 PO4 A 1 1202 1 PO4 PO4 . D 3 PO4 A 1 1203 2 PO4 PO4 . E 3 PO4 A 1 1204 3 PO4 PO4 . F 3 PO4 A 1 1205 4 PO4 PO4 . G 3 PO4 A 1 1206 5 PO4 PO4 . H 4 OLA A 1 1207 2009 OLA OLA . I 4 OLA A 1 1208 2010 OLA OLA . J 4 OLA A 1 1209 2012 OLA OLA . K 4 OLA A 1 1210 2013 OLA OLA . L 4 OLA A 1 1211 2014 OLA OLA . M 4 OLA A 1 1212 2015 OLA OLA . N 4 OLA A 1 1213 2017 OLA OLA . O 4 OLA A 1 1214 2018 OLA OLA . P 5 PEG A 1 1215 2013 PEG PEG . Q 5 PEG A 1 1216 2014 PEG PEG . R 5 PEG A 1 1217 2017 PEG PEG . S 5 PEG A 1 1218 2018 PEG PEG . T 5 PEG A 1 1219 2019 PEG PEG . U 5 PEG A 1 1220 2020 PEG PEG . V 5 PEG A 1 1221 2021 PEG PEG . W 5 PEG A 1 1222 2022 PEG PEG . X 5 PEG A 1 1223 2023 PEG PEG . Y 6 NA A 1 1224 1 NA NA . Z 7 HOH A 1 1301 193 HOH HOH . Z 7 HOH A 2 1302 127 HOH HOH . Z 7 HOH A 3 1303 150 HOH HOH . Z 7 HOH A 4 1304 26 HOH HOH . Z 7 HOH A 5 1305 186 HOH HOH . Z 7 HOH A 6 1306 169 HOH HOH . Z 7 HOH A 7 1307 90 HOH HOH . Z 7 HOH A 8 1308 181 HOH HOH . Z 7 HOH A 9 1309 180 HOH HOH . Z 7 HOH A 10 1310 22 HOH HOH . Z 7 HOH A 11 1311 1 HOH HOH . Z 7 HOH A 12 1312 60 HOH HOH . Z 7 HOH A 13 1313 17 HOH HOH . Z 7 HOH A 14 1314 7 HOH HOH . Z 7 HOH A 15 1315 56 HOH HOH . Z 7 HOH A 16 1316 179 HOH HOH . Z 7 HOH A 17 1317 18 HOH HOH . Z 7 HOH A 18 1318 194 HOH HOH . Z 7 HOH A 19 1319 11 HOH HOH . Z 7 HOH A 20 1320 5 HOH HOH . Z 7 HOH A 21 1321 19 HOH HOH . Z 7 HOH A 22 1322 24 HOH HOH . Z 7 HOH A 23 1323 37 HOH HOH . Z 7 HOH A 24 1324 106 HOH HOH . Z 7 HOH A 25 1325 176 HOH HOH . Z 7 HOH A 26 1326 196 HOH HOH . Z 7 HOH A 27 1327 35 HOH HOH . Z 7 HOH A 28 1328 34 HOH HOH . Z 7 HOH A 29 1329 190 HOH HOH . Z 7 HOH A 30 1330 185 HOH HOH . Z 7 HOH A 31 1331 83 HOH HOH . Z 7 HOH A 32 1332 153 HOH HOH . Z 7 HOH A 33 1333 15 HOH HOH . Z 7 HOH A 34 1334 36 HOH HOH . Z 7 HOH A 35 1335 43 HOH HOH . Z 7 HOH A 36 1336 32 HOH HOH . Z 7 HOH A 37 1337 12 HOH HOH . Z 7 HOH A 38 1338 113 HOH HOH . Z 7 HOH A 39 1339 69 HOH HOH . Z 7 HOH A 40 1340 178 HOH HOH . Z 7 HOH A 41 1341 28 HOH HOH . Z 7 HOH A 42 1342 33 HOH HOH . Z 7 HOH A 43 1343 175 HOH HOH . Z 7 HOH A 44 1344 13 HOH HOH . Z 7 HOH A 45 1345 58 HOH HOH . Z 7 HOH A 46 1346 10 HOH HOH . Z 7 HOH A 47 1347 162 HOH HOH . Z 7 HOH A 48 1348 197 HOH HOH . Z 7 HOH A 49 1349 27 HOH HOH . Z 7 HOH A 50 1350 8 HOH HOH . Z 7 HOH A 51 1351 20 HOH HOH . Z 7 HOH A 52 1352 111 HOH HOH . Z 7 HOH A 53 1353 57 HOH HOH . Z 7 HOH A 54 1354 95 HOH HOH . Z 7 HOH A 55 1355 48 HOH HOH . Z 7 HOH A 56 1356 76 HOH HOH . Z 7 HOH A 57 1357 14 HOH HOH . Z 7 HOH A 58 1358 122 HOH HOH . Z 7 HOH A 59 1359 73 HOH HOH . Z 7 HOH A 60 1360 192 HOH HOH . Z 7 HOH A 61 1361 21 HOH HOH . Z 7 HOH A 62 1362 81 HOH HOH . Z 7 HOH A 63 1363 195 HOH HOH . Z 7 HOH A 64 1364 184 HOH HOH . Z 7 HOH A 65 1365 110 HOH HOH . Z 7 HOH A 66 1366 4 HOH HOH . Z 7 HOH A 67 1367 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . J 4 -16.613 10.826 2.391 1 72.76 ? C1 OLA 1209 A 1 HETATM 2 O O1 OLA . . . J 4 -16.014 11.922 2.456 1 63.02 ? O1 OLA 1209 A 1 HETATM 3 O O2 OLA . . . J 4 -17.181 10.367 3.414 1 72.25 ? O2 OLA 1209 A 1 HETATM 4 C C2 OLA . . . J 4 -16.662 10.073 1.086 1 66.28 ? C2 OLA 1209 A 1 HETATM 5 C C3 OLA . . . J 4 -15.251 9.857 0.573 1 57.97 ? C3 OLA 1209 A 1 HETATM 6 C C4 OLA . . . J 4 -15.246 8.558 -0.206 1 56.43 ? C4 OLA 1209 A 1 HETATM 7 C C5 OLA . . . J 4 -13.828 8.194 -0.632 1 56.34 ? C5 OLA 1209 A 1 HETATM 8 C C6 OLA . . . J 4 -13.9 6.963 -1.523 1 52.47 ? C6 OLA 1209 A 1 HETATM 9 C C7 OLA . . . J 4 -12.764 5.99 -1.259 1 62.02 ? C7 OLA 1209 A 1 HETATM 10 C C8 OLA . . . J 4 -11.597 6.26 -2.204 1 68.67 ? C8 OLA 1209 A 1 HETATM 11 C C9 OLA . . . J 4 -10.802 4.99 -2.407 1 70.22 ? C9 OLA 1209 A 1 HETATM 12 C C10 OLA . . . J 4 -10.95 4.263 -3.517 1 72.68 ? C10 OLA 1209 A 1 HETATM 13 C C11 OLA . . . J 4 -9.84 3.347 -3.995 1 70.91 ? C11 OLA 1209 A 1 HETATM 14 C C12 OLA . . . J 4 -10.255 1.886 -3.821 1 69.84 ? C12 OLA 1209 A 1 HETATM 15 C C13 OLA . . . J 4 -11.463 1.492 -4.678 1 72.57 ? C13 OLA 1209 A 1 HETATM 16 C C14 OLA . . . J 4 -12.538 0.755 -3.874 1 68.67 ? C14 OLA 1209 A 1 HETATM 17 C C15 OLA . . . J 4 -13.466 -0.089 -4.749 1 65.76 ? C15 OLA 1209 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #