data_5WIV # _model_server_result.job_id 27ww8Zgf50dVfhzjpWDnSg _model_server_result.datetime_utc '2024-11-25 12:17:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1216}' # _entry.id 5WIV # _exptl.entry_id 5WIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WIV _cell.length_a 67.861 _cell.length_b 162.836 _cell.length_c 83.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 112 A CYS 108 1_555 A SG CYS 189 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 375 A CYS 420 1_555 A SG CYS 378 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc1 A OD1 ASP 84 A ASP 80 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A OG SER 126 A SER 122 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 345 n n C1 C2 PEG sing 346 n n C1 H11 PEG sing 347 n n C1 H12 PEG sing 348 n n O1 HO1 PEG sing 349 n n C2 O2 PEG sing 350 n n C2 H21 PEG sing 351 n n C2 H22 PEG sing 352 n n O2 C3 PEG sing 353 n n C3 C4 PEG sing 354 n n C3 H31 PEG sing 355 n n C3 H32 PEG sing 356 n n C4 O4 PEG sing 357 n n C4 H41 PEG sing 358 n n C4 H42 PEG sing 359 n n O4 HO4 PEG sing 360 n n # _atom_sites.entry_id 5WIV _atom_sites.fract_transf_matrix[1][1] 0.014736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AQD A 1 1201 1 AQD DRG . C 3 PO4 A 1 1202 1 PO4 PO4 . D 3 PO4 A 1 1203 2 PO4 PO4 . E 3 PO4 A 1 1204 3 PO4 PO4 . F 3 PO4 A 1 1205 4 PO4 PO4 . G 3 PO4 A 1 1206 5 PO4 PO4 . H 4 OLA A 1 1207 2009 OLA OLA . I 4 OLA A 1 1208 2010 OLA OLA . J 4 OLA A 1 1209 2012 OLA OLA . K 4 OLA A 1 1210 2013 OLA OLA . L 4 OLA A 1 1211 2014 OLA OLA . M 4 OLA A 1 1212 2015 OLA OLA . N 4 OLA A 1 1213 2017 OLA OLA . O 4 OLA A 1 1214 2018 OLA OLA . P 5 PEG A 1 1215 2013 PEG PEG . Q 5 PEG A 1 1216 2014 PEG PEG . R 5 PEG A 1 1217 2017 PEG PEG . S 5 PEG A 1 1218 2018 PEG PEG . T 5 PEG A 1 1219 2019 PEG PEG . U 5 PEG A 1 1220 2020 PEG PEG . V 5 PEG A 1 1221 2021 PEG PEG . W 5 PEG A 1 1222 2022 PEG PEG . X 5 PEG A 1 1223 2023 PEG PEG . Y 6 NA A 1 1224 1 NA NA . Z 7 HOH A 1 1301 193 HOH HOH . Z 7 HOH A 2 1302 127 HOH HOH . Z 7 HOH A 3 1303 150 HOH HOH . Z 7 HOH A 4 1304 26 HOH HOH . Z 7 HOH A 5 1305 186 HOH HOH . Z 7 HOH A 6 1306 169 HOH HOH . Z 7 HOH A 7 1307 90 HOH HOH . Z 7 HOH A 8 1308 181 HOH HOH . Z 7 HOH A 9 1309 180 HOH HOH . Z 7 HOH A 10 1310 22 HOH HOH . Z 7 HOH A 11 1311 1 HOH HOH . Z 7 HOH A 12 1312 60 HOH HOH . Z 7 HOH A 13 1313 17 HOH HOH . Z 7 HOH A 14 1314 7 HOH HOH . Z 7 HOH A 15 1315 56 HOH HOH . Z 7 HOH A 16 1316 179 HOH HOH . Z 7 HOH A 17 1317 18 HOH HOH . Z 7 HOH A 18 1318 194 HOH HOH . Z 7 HOH A 19 1319 11 HOH HOH . Z 7 HOH A 20 1320 5 HOH HOH . Z 7 HOH A 21 1321 19 HOH HOH . Z 7 HOH A 22 1322 24 HOH HOH . Z 7 HOH A 23 1323 37 HOH HOH . Z 7 HOH A 24 1324 106 HOH HOH . Z 7 HOH A 25 1325 176 HOH HOH . Z 7 HOH A 26 1326 196 HOH HOH . Z 7 HOH A 27 1327 35 HOH HOH . Z 7 HOH A 28 1328 34 HOH HOH . Z 7 HOH A 29 1329 190 HOH HOH . Z 7 HOH A 30 1330 185 HOH HOH . Z 7 HOH A 31 1331 83 HOH HOH . Z 7 HOH A 32 1332 153 HOH HOH . Z 7 HOH A 33 1333 15 HOH HOH . Z 7 HOH A 34 1334 36 HOH HOH . Z 7 HOH A 35 1335 43 HOH HOH . Z 7 HOH A 36 1336 32 HOH HOH . Z 7 HOH A 37 1337 12 HOH HOH . Z 7 HOH A 38 1338 113 HOH HOH . Z 7 HOH A 39 1339 69 HOH HOH . Z 7 HOH A 40 1340 178 HOH HOH . Z 7 HOH A 41 1341 28 HOH HOH . Z 7 HOH A 42 1342 33 HOH HOH . Z 7 HOH A 43 1343 175 HOH HOH . Z 7 HOH A 44 1344 13 HOH HOH . Z 7 HOH A 45 1345 58 HOH HOH . Z 7 HOH A 46 1346 10 HOH HOH . Z 7 HOH A 47 1347 162 HOH HOH . Z 7 HOH A 48 1348 197 HOH HOH . Z 7 HOH A 49 1349 27 HOH HOH . Z 7 HOH A 50 1350 8 HOH HOH . Z 7 HOH A 51 1351 20 HOH HOH . Z 7 HOH A 52 1352 111 HOH HOH . Z 7 HOH A 53 1353 57 HOH HOH . Z 7 HOH A 54 1354 95 HOH HOH . Z 7 HOH A 55 1355 48 HOH HOH . Z 7 HOH A 56 1356 76 HOH HOH . Z 7 HOH A 57 1357 14 HOH HOH . Z 7 HOH A 58 1358 122 HOH HOH . Z 7 HOH A 59 1359 73 HOH HOH . Z 7 HOH A 60 1360 192 HOH HOH . Z 7 HOH A 61 1361 21 HOH HOH . Z 7 HOH A 62 1362 81 HOH HOH . Z 7 HOH A 63 1363 195 HOH HOH . Z 7 HOH A 64 1364 184 HOH HOH . Z 7 HOH A 65 1365 110 HOH HOH . Z 7 HOH A 66 1366 4 HOH HOH . Z 7 HOH A 67 1367 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . Q 5 -1 12.355 -7.812 1 74.48 ? C1 PEG 1216 A 1 HETATM 2 O O1 PEG . . . Q 5 -1.417 11.421 -8.831 1 77.13 ? O1 PEG 1216 A 1 HETATM 3 C C2 PEG . . . Q 5 -1.869 13.631 -7.59 1 72.15 ? C2 PEG 1216 A 1 HETATM 4 O O2 PEG . . . Q 5 -1.407 14.561 -6.819 1 67.68 ? O2 PEG 1216 A 1 HETATM 5 C C3 PEG . . . Q 5 -1.709 14.535 -5.39 1 70.15 ? C3 PEG 1216 A 1 HETATM 6 C C4 PEG . . . Q 5 -1.262 15.718 -4.506 1 71.46 ? C4 PEG 1216 A 1 HETATM 7 O O4 PEG . . . Q 5 -1.679 16.974 -4.825 1 70.71 ? O4 PEG 1216 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #