data_5WJA
#
_model_server_result.job_id            6gF5SwyTNc9y5wd2_bGk7Q 
_model_server_result.datetime_utc      '2024-12-01 20:52:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    5WJA 
#
_exptl.entry_id    5WJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              63.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COPPER (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WJA 
_cell.length_a            59.544 
_cell.length_b            100.613 
_cell.length_c            101.582 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,N 1 1 
B,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 37 A CYS 81 1_555 A SG CYS 82 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 70 A CYS 114 1_555 A SG CYS 87 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf3 A SG CYS 183 A CYS 227 1_555 A SG CYS 290 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 A SG CYS 249 A CYS 293 1_555 A SG CYS 271 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf5 B SG CYS 3 D CYS 47 1_555 B SG CYS 142 D CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 B SG CYS 37 D CYS 81 1_555 B SG CYS 82 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf7 B SG CYS 70 D CYS 114 1_555 B SG CYS 87 D CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 B SG CYS 183 D CYS 227 1_555 B SG CYS 290 D CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf9 B SG CYS 249 D CYS 293 1_555 B SG CYS 271 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc1 A ND1 HIS 64 A HIS 108 1_555 C CU CU . A CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc2 A OE1 GLU 84 A GLU 128 1_555 D CU CU . A CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc3 A ND1 HIS 128 A HIS 172 1_555 C CU CU . A CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc4 A NE2 HIS 198 A HIS 242 1_555 D CU CU . A CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc5 A NE2 HIS 200 A HIS 244 1_555 D CU CU . A CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc6 A NE2 HIS 235 A HIS 279 1_555 K NI NI . A NI 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc7 A SD MET 270 A MET 314 1_555 D CU CU . A CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc8 C CU CU . A CU 1001 1_555 N O HOH . A HOH 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc9 K NI NI . A NI 1009 3_444 B ND1 HIS 191 D HIS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc10 K NI NI . A NI 1009 3_444 B OD1 ASP 238 D ASP 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc11 B NE2 HIS 198 D HIS 242 1_555 L CU CU . D CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc12 B NE2 HIS 200 D HIS 244 1_555 L CU CU . D CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc13 B SD MET 270 D MET 314 1_555 L CU CU . D CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc14 L CU CU . D CU 1001 1_555 O O HOH . D HOH 1113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
#
_chem_comp.formula           'Cu 2' 
_chem_comp.formula_weight    63.546 
_chem_comp.id                CU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COPPER (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5WJA 
_atom_sites.fract_transf_matrix[1][1]    0.016794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009939 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009844 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CU A 1 1001 401 CU CU . 
D 2 CU A 1 1002 402 CU CU . 
E 3 GOL A 1 1003 403 GOL GOL . 
F 3 GOL A 1 1004 404 GOL GOL . 
G 3 GOL A 1 1005 405 GOL GOL . 
H 3 GOL A 1 1006 406 GOL GOL . 
I 3 GOL A 1 1007 407 GOL GOL . 
J 3 GOL A 1 1008 408 GOL GOL . 
K 4 NI A 1 1009 1 NI NI . 
L 2 CU D 1 1001 401 CU CU . 
M 5 FLC D 1 1002 402 FLC FLC . 
N 6 HOH A 1 1101 34 HOH HOH . 
N 6 HOH A 2 1102 89 HOH HOH . 
N 6 HOH A 3 1103 61 HOH HOH . 
N 6 HOH A 4 1104 75 HOH HOH . 
N 6 HOH A 5 1105 74 HOH HOH . 
N 6 HOH A 6 1106 78 HOH HOH . 
N 6 HOH A 7 1107 65 HOH HOH . 
N 6 HOH A 8 1108 57 HOH HOH . 
N 6 HOH A 9 1109 27 HOH HOH . 
N 6 HOH A 10 1110 76 HOH HOH . 
N 6 HOH A 11 1111 23 HOH HOH . 
N 6 HOH A 12 1112 58 HOH HOH . 
N 6 HOH A 13 1113 77 HOH HOH . 
N 6 HOH A 14 1114 63 HOH HOH . 
N 6 HOH A 15 1115 92 HOH HOH . 
N 6 HOH A 16 1116 38 HOH HOH . 
N 6 HOH A 17 1117 41 HOH HOH . 
N 6 HOH A 18 1118 49 HOH HOH . 
N 6 HOH A 19 1119 7 HOH HOH . 
N 6 HOH A 20 1120 17 HOH HOH . 
N 6 HOH A 21 1121 94 HOH HOH . 
N 6 HOH A 22 1122 8 HOH HOH . 
N 6 HOH A 23 1123 49 HOH HOH . 
N 6 HOH A 24 1124 90 HOH HOH . 
N 6 HOH A 25 1125 35 HOH HOH . 
N 6 HOH A 26 1126 11 HOH HOH . 
N 6 HOH A 27 1127 33 HOH HOH . 
N 6 HOH A 28 1128 36 HOH HOH . 
N 6 HOH A 29 1129 34 HOH HOH . 
N 6 HOH A 30 1130 96 HOH HOH . 
N 6 HOH A 31 1131 90 HOH HOH . 
N 6 HOH A 32 1132 9 HOH HOH . 
N 6 HOH A 33 1133 42 HOH HOH . 
N 6 HOH A 34 1134 25 HOH HOH . 
N 6 HOH A 35 1135 55 HOH HOH . 
N 6 HOH A 36 1136 112 HOH HOH . 
N 6 HOH A 37 1137 94 HOH HOH . 
N 6 HOH A 38 1138 52 HOH HOH . 
N 6 HOH A 39 1139 108 HOH HOH . 
N 6 HOH A 40 1140 100 HOH HOH . 
N 6 HOH A 41 1141 62 HOH HOH . 
N 6 HOH A 42 1142 98 HOH HOH . 
N 6 HOH A 43 1143 46 HOH HOH . 
N 6 HOH A 44 1144 105 HOH HOH . 
N 6 HOH A 45 1145 54 HOH HOH . 
N 6 HOH A 46 1146 40 HOH HOH . 
N 6 HOH A 47 1147 101 HOH HOH . 
N 6 HOH A 48 1148 39 HOH HOH . 
N 6 HOH A 49 1149 32 HOH HOH . 
N 6 HOH A 50 1150 73 HOH HOH . 
N 6 HOH A 51 1151 8 HOH HOH . 
N 6 HOH A 52 1152 37 HOH HOH . 
N 6 HOH A 53 1153 64 HOH HOH . 
N 6 HOH A 54 1154 31 HOH HOH . 
N 6 HOH A 55 1155 24 HOH HOH . 
N 6 HOH A 56 1156 83 HOH HOH . 
N 6 HOH A 57 1157 107 HOH HOH . 
N 6 HOH A 58 1158 71 HOH HOH . 
N 6 HOH A 59 1159 87 HOH HOH . 
N 6 HOH A 60 1160 43 HOH HOH . 
N 6 HOH A 61 1161 59 HOH HOH . 
N 6 HOH A 62 1162 113 HOH HOH . 
N 6 HOH A 63 1163 51 HOH HOH . 
N 6 HOH A 64 1164 104 HOH HOH . 
N 6 HOH A 65 1165 88 HOH HOH . 
N 6 HOH A 66 1166 95 HOH HOH . 
N 6 HOH A 67 1167 97 HOH HOH . 
N 6 HOH A 68 1168 109 HOH HOH . 
N 6 HOH A 69 1169 2 HOH HOH . 
N 6 HOH A 70 1170 56 HOH HOH . 
N 6 HOH A 71 1171 1 HOH HOH . 
N 6 HOH A 72 1172 33 HOH HOH . 
N 6 HOH A 73 1173 120 HOH HOH . 
N 6 HOH A 74 1174 89 HOH HOH . 
N 6 HOH A 75 1175 44 HOH HOH . 
N 6 HOH A 76 1176 86 HOH HOH . 
N 6 HOH A 77 1177 26 HOH HOH . 
N 6 HOH A 78 1178 45 HOH HOH . 
N 6 HOH A 79 1179 30 HOH HOH . 
N 6 HOH A 80 1180 217 HOH HOH . 
N 6 HOH A 81 1181 29 HOH HOH . 
O 6 HOH D 1 1101 50 HOH HOH . 
O 6 HOH D 2 1102 80 HOH HOH . 
O 6 HOH D 3 1103 47 HOH HOH . 
O 6 HOH D 4 1104 6 HOH HOH . 
O 6 HOH D 5 1105 5 HOH HOH . 
O 6 HOH D 6 1106 48 HOH HOH . 
O 6 HOH D 7 1107 18 HOH HOH . 
O 6 HOH D 8 1108 106 HOH HOH . 
O 6 HOH D 9 1109 22 HOH HOH . 
O 6 HOH D 10 1110 20 HOH HOH . 
O 6 HOH D 11 1111 4 HOH HOH . 
O 6 HOH D 12 1112 21 HOH HOH . 
O 6 HOH D 13 1113 121 HOH HOH . 
O 6 HOH D 14 1114 12 HOH HOH . 
O 6 HOH D 15 1115 93 HOH HOH . 
O 6 HOH D 16 1116 116 HOH HOH . 
O 6 HOH D 17 1117 114 HOH HOH . 
O 6 HOH D 18 1118 38 HOH HOH . 
O 6 HOH D 19 1119 68 HOH HOH . 
O 6 HOH D 20 1120 11 HOH HOH . 
O 6 HOH D 21 1121 82 HOH HOH . 
O 6 HOH D 22 1122 84 HOH HOH . 
O 6 HOH D 23 1123 103 HOH HOH . 
O 6 HOH D 24 1124 95 HOH HOH . 
O 6 HOH D 25 1125 72 HOH HOH . 
O 6 HOH D 26 1126 37 HOH HOH . 
O 6 HOH D 27 1127 17 HOH HOH . 
O 6 HOH D 28 1128 117 HOH HOH . 
O 6 HOH D 29 1129 79 HOH HOH . 
O 6 HOH D 30 1130 19 HOH HOH . 
O 6 HOH D 31 1131 15 HOH HOH . 
O 6 HOH D 32 1132 23 HOH HOH . 
O 6 HOH D 33 1133 81 HOH HOH . 
O 6 HOH D 34 1134 110 HOH HOH . 
O 6 HOH D 35 1135 111 HOH HOH . 
O 6 HOH D 36 1136 102 HOH HOH . 
O 6 HOH D 37 1137 13 HOH HOH . 
O 6 HOH D 38 1138 45 HOH HOH . 
O 6 HOH D 39 1139 16 HOH HOH . 
O 6 HOH D 40 1140 5 HOH HOH . 
O 6 HOH D 41 1141 16 HOH HOH . 
O 6 HOH D 42 1142 70 HOH HOH . 
O 6 HOH D 43 1143 220 HOH HOH . 
O 6 HOH D 44 1144 32 HOH HOH . 
O 6 HOH D 45 1145 81 HOH HOH . 
O 6 HOH D 46 1146 25 HOH HOH . 
O 6 HOH D 47 1147 57 HOH HOH . 
O 6 HOH D 48 1148 10 HOH HOH . 
O 6 HOH D 49 1149 83 HOH HOH . 
O 6 HOH D 50 1150 119 HOH HOH . 
O 6 HOH D 51 1151 3 HOH HOH . 
O 6 HOH D 52 1152 52 HOH HOH . 
O 6 HOH D 53 1153 62 HOH HOH . 
O 6 HOH D 54 1154 14 HOH HOH . 
O 6 HOH D 55 1155 60 HOH HOH . 
O 6 HOH D 56 1156 66 HOH HOH . 
O 6 HOH D 57 1157 69 HOH HOH . 
O 6 HOH D 58 1158 218 HOH HOH . 
O 6 HOH D 59 1159 118 HOH HOH . 
O 6 HOH D 60 1160 217 HOH HOH . 
O 6 HOH D 61 1161 115 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CU 
_atom_site.label_atom_id         CU 
_atom_site.label_comp_id         CU 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -27.549 
_atom_site.Cartn_y               11.044 
_atom_site.Cartn_z               -4.233 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        73.31 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CU 
_atom_site.auth_comp_id          CU 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#