data_5WJA # _model_server_result.job_id CKQsrvLSKvzMxyNFt_fOsg _model_server_result.datetime_utc '2024-10-17 19:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1002}' # _entry.id 5WJA # _exptl.entry_id 5WJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WJA _cell.length_a 59.544 _cell.length_b 100.613 _cell.length_c 101.582 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,N 1 1 B,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 81 1_555 A SG CYS 82 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 70 A CYS 114 1_555 A SG CYS 87 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf3 A SG CYS 183 A CYS 227 1_555 A SG CYS 290 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 249 A CYS 293 1_555 A SG CYS 271 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf5 B SG CYS 3 D CYS 47 1_555 B SG CYS 142 D CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 37 D CYS 81 1_555 B SG CYS 82 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf7 B SG CYS 70 D CYS 114 1_555 B SG CYS 87 D CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 183 D CYS 227 1_555 B SG CYS 290 D CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf9 B SG CYS 249 D CYS 293 1_555 B SG CYS 271 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A ND1 HIS 64 A HIS 108 1_555 C CU CU . A CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 A OE1 GLU 84 A GLU 128 1_555 D CU CU . A CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 A ND1 HIS 128 A HIS 172 1_555 C CU CU . A CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 A NE2 HIS 198 A HIS 242 1_555 D CU CU . A CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc5 A NE2 HIS 200 A HIS 244 1_555 D CU CU . A CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 A NE2 HIS 235 A HIS 279 1_555 K NI NI . A NI 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc7 A SD MET 270 A MET 314 1_555 D CU CU . A CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 C CU CU . A CU 1001 1_555 N O HOH . A HOH 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc9 K NI NI . A NI 1009 3_444 B ND1 HIS 191 D HIS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc10 K NI NI . A NI 1009 3_444 B OD1 ASP 238 D ASP 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc11 B NE2 HIS 198 D HIS 242 1_555 L CU CU . D CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc12 B NE2 HIS 200 D HIS 244 1_555 L CU CU . D CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc13 B SD MET 270 D MET 314 1_555 L CU CU . D CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc14 L CU CU . D CU 1001 1_555 O O HOH . D HOH 1113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 83 n n CAC OA1 FLC doub 84 n n CAC OA2 FLC sing 85 n n CA CB FLC sing 86 n n CA HA1 FLC sing 87 n n CA HA2 FLC sing 88 n n CB CBC FLC sing 89 n n CB CG FLC sing 90 n n CB OHB FLC sing 91 n n CBC OB1 FLC doub 92 n n CBC OB2 FLC sing 93 n n CG CGC FLC sing 94 n n CG HG1 FLC sing 95 n n CG HG2 FLC sing 96 n n CGC OG1 FLC doub 97 n n CGC OG2 FLC sing 98 n n OHB HOB FLC sing 99 n n # _atom_sites.entry_id 5WJA _atom_sites.fract_transf_matrix[1][1] 0.016794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 1001 401 CU CU . D 2 CU A 1 1002 402 CU CU . E 3 GOL A 1 1003 403 GOL GOL . F 3 GOL A 1 1004 404 GOL GOL . G 3 GOL A 1 1005 405 GOL GOL . H 3 GOL A 1 1006 406 GOL GOL . I 3 GOL A 1 1007 407 GOL GOL . J 3 GOL A 1 1008 408 GOL GOL . K 4 NI A 1 1009 1 NI NI . L 2 CU D 1 1001 401 CU CU . M 5 FLC D 1 1002 402 FLC FLC . N 6 HOH A 1 1101 34 HOH HOH . N 6 HOH A 2 1102 89 HOH HOH . N 6 HOH A 3 1103 61 HOH HOH . N 6 HOH A 4 1104 75 HOH HOH . N 6 HOH A 5 1105 74 HOH HOH . N 6 HOH A 6 1106 78 HOH HOH . N 6 HOH A 7 1107 65 HOH HOH . N 6 HOH A 8 1108 57 HOH HOH . N 6 HOH A 9 1109 27 HOH HOH . N 6 HOH A 10 1110 76 HOH HOH . N 6 HOH A 11 1111 23 HOH HOH . N 6 HOH A 12 1112 58 HOH HOH . N 6 HOH A 13 1113 77 HOH HOH . N 6 HOH A 14 1114 63 HOH HOH . N 6 HOH A 15 1115 92 HOH HOH . N 6 HOH A 16 1116 38 HOH HOH . N 6 HOH A 17 1117 41 HOH HOH . N 6 HOH A 18 1118 49 HOH HOH . N 6 HOH A 19 1119 7 HOH HOH . N 6 HOH A 20 1120 17 HOH HOH . N 6 HOH A 21 1121 94 HOH HOH . N 6 HOH A 22 1122 8 HOH HOH . N 6 HOH A 23 1123 49 HOH HOH . N 6 HOH A 24 1124 90 HOH HOH . N 6 HOH A 25 1125 35 HOH HOH . N 6 HOH A 26 1126 11 HOH HOH . N 6 HOH A 27 1127 33 HOH HOH . N 6 HOH A 28 1128 36 HOH HOH . N 6 HOH A 29 1129 34 HOH HOH . N 6 HOH A 30 1130 96 HOH HOH . N 6 HOH A 31 1131 90 HOH HOH . N 6 HOH A 32 1132 9 HOH HOH . N 6 HOH A 33 1133 42 HOH HOH . N 6 HOH A 34 1134 25 HOH HOH . N 6 HOH A 35 1135 55 HOH HOH . N 6 HOH A 36 1136 112 HOH HOH . N 6 HOH A 37 1137 94 HOH HOH . N 6 HOH A 38 1138 52 HOH HOH . N 6 HOH A 39 1139 108 HOH HOH . N 6 HOH A 40 1140 100 HOH HOH . N 6 HOH A 41 1141 62 HOH HOH . N 6 HOH A 42 1142 98 HOH HOH . N 6 HOH A 43 1143 46 HOH HOH . N 6 HOH A 44 1144 105 HOH HOH . N 6 HOH A 45 1145 54 HOH HOH . N 6 HOH A 46 1146 40 HOH HOH . N 6 HOH A 47 1147 101 HOH HOH . N 6 HOH A 48 1148 39 HOH HOH . N 6 HOH A 49 1149 32 HOH HOH . N 6 HOH A 50 1150 73 HOH HOH . N 6 HOH A 51 1151 8 HOH HOH . N 6 HOH A 52 1152 37 HOH HOH . N 6 HOH A 53 1153 64 HOH HOH . N 6 HOH A 54 1154 31 HOH HOH . N 6 HOH A 55 1155 24 HOH HOH . N 6 HOH A 56 1156 83 HOH HOH . N 6 HOH A 57 1157 107 HOH HOH . N 6 HOH A 58 1158 71 HOH HOH . N 6 HOH A 59 1159 87 HOH HOH . N 6 HOH A 60 1160 43 HOH HOH . N 6 HOH A 61 1161 59 HOH HOH . N 6 HOH A 62 1162 113 HOH HOH . N 6 HOH A 63 1163 51 HOH HOH . N 6 HOH A 64 1164 104 HOH HOH . N 6 HOH A 65 1165 88 HOH HOH . N 6 HOH A 66 1166 95 HOH HOH . N 6 HOH A 67 1167 97 HOH HOH . N 6 HOH A 68 1168 109 HOH HOH . N 6 HOH A 69 1169 2 HOH HOH . N 6 HOH A 70 1170 56 HOH HOH . N 6 HOH A 71 1171 1 HOH HOH . N 6 HOH A 72 1172 33 HOH HOH . N 6 HOH A 73 1173 120 HOH HOH . N 6 HOH A 74 1174 89 HOH HOH . N 6 HOH A 75 1175 44 HOH HOH . N 6 HOH A 76 1176 86 HOH HOH . N 6 HOH A 77 1177 26 HOH HOH . N 6 HOH A 78 1178 45 HOH HOH . N 6 HOH A 79 1179 30 HOH HOH . N 6 HOH A 80 1180 217 HOH HOH . N 6 HOH A 81 1181 29 HOH HOH . O 6 HOH D 1 1101 50 HOH HOH . O 6 HOH D 2 1102 80 HOH HOH . O 6 HOH D 3 1103 47 HOH HOH . O 6 HOH D 4 1104 6 HOH HOH . O 6 HOH D 5 1105 5 HOH HOH . O 6 HOH D 6 1106 48 HOH HOH . O 6 HOH D 7 1107 18 HOH HOH . O 6 HOH D 8 1108 106 HOH HOH . O 6 HOH D 9 1109 22 HOH HOH . O 6 HOH D 10 1110 20 HOH HOH . O 6 HOH D 11 1111 4 HOH HOH . O 6 HOH D 12 1112 21 HOH HOH . O 6 HOH D 13 1113 121 HOH HOH . O 6 HOH D 14 1114 12 HOH HOH . O 6 HOH D 15 1115 93 HOH HOH . O 6 HOH D 16 1116 116 HOH HOH . O 6 HOH D 17 1117 114 HOH HOH . O 6 HOH D 18 1118 38 HOH HOH . O 6 HOH D 19 1119 68 HOH HOH . O 6 HOH D 20 1120 11 HOH HOH . O 6 HOH D 21 1121 82 HOH HOH . O 6 HOH D 22 1122 84 HOH HOH . O 6 HOH D 23 1123 103 HOH HOH . O 6 HOH D 24 1124 95 HOH HOH . O 6 HOH D 25 1125 72 HOH HOH . O 6 HOH D 26 1126 37 HOH HOH . O 6 HOH D 27 1127 17 HOH HOH . O 6 HOH D 28 1128 117 HOH HOH . O 6 HOH D 29 1129 79 HOH HOH . O 6 HOH D 30 1130 19 HOH HOH . O 6 HOH D 31 1131 15 HOH HOH . O 6 HOH D 32 1132 23 HOH HOH . O 6 HOH D 33 1133 81 HOH HOH . O 6 HOH D 34 1134 110 HOH HOH . O 6 HOH D 35 1135 111 HOH HOH . O 6 HOH D 36 1136 102 HOH HOH . O 6 HOH D 37 1137 13 HOH HOH . O 6 HOH D 38 1138 45 HOH HOH . O 6 HOH D 39 1139 16 HOH HOH . O 6 HOH D 40 1140 5 HOH HOH . O 6 HOH D 41 1141 16 HOH HOH . O 6 HOH D 42 1142 70 HOH HOH . O 6 HOH D 43 1143 220 HOH HOH . O 6 HOH D 44 1144 32 HOH HOH . O 6 HOH D 45 1145 81 HOH HOH . O 6 HOH D 46 1146 25 HOH HOH . O 6 HOH D 47 1147 57 HOH HOH . O 6 HOH D 48 1148 10 HOH HOH . O 6 HOH D 49 1149 83 HOH HOH . O 6 HOH D 50 1150 119 HOH HOH . O 6 HOH D 51 1151 3 HOH HOH . O 6 HOH D 52 1152 52 HOH HOH . O 6 HOH D 53 1153 62 HOH HOH . O 6 HOH D 54 1154 14 HOH HOH . O 6 HOH D 55 1155 60 HOH HOH . O 6 HOH D 56 1156 66 HOH HOH . O 6 HOH D 57 1157 69 HOH HOH . O 6 HOH D 58 1158 218 HOH HOH . O 6 HOH D 59 1159 118 HOH HOH . O 6 HOH D 60 1160 217 HOH HOH . O 6 HOH D 61 1161 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . M 5 1.733 -3.464 -11.966 1 68.41 ? CAC FLC 1002 D 1 HETATM 2 C CA FLC . . . M 5 0.447 -4.225 -12.252 1 63.48 ? CA FLC 1002 D 1 HETATM 3 C CB FLC . . . M 5 -0.852 -3.382 -12.219 1 56.76 ? CB FLC 1002 D 1 HETATM 4 C CBC FLC . . . M 5 -0.853 -2.011 -11.597 1 52.49 ? CBC FLC 1002 D 1 HETATM 5 C CG FLC . . . M 5 -2.196 -3.78 -12.909 1 54.95 ? CG FLC 1002 D 1 HETATM 6 C CGC FLC . . . M 5 -2.1 -4.766 -14.054 1 54.38 ? CGC FLC 1002 D 1 HETATM 7 O OA1 FLC . . . M 5 2.677 -3.632 -12.771 1 69.47 -1 OA1 FLC 1002 D 1 HETATM 8 O OA2 FLC . . . M 5 1.818 -2.709 -10.973 1 68.78 ? OA2 FLC 1002 D 1 HETATM 9 O OB1 FLC . . . M 5 -0.902 -0.967 -12.291 1 66.08 -1 OB1 FLC 1002 D 1 HETATM 10 O OB2 FLC . . . M 5 -0.855 -1.951 -10.381 1 35.92 ? OB2 FLC 1002 D 1 HETATM 11 O OG1 FLC . . . M 5 -1.006 -4.929 -14.615 1 65.75 -1 OG1 FLC 1002 D 1 HETATM 12 O OG2 FLC . . . M 5 -3.087 -5.404 -14.457 1 52.03 ? OG2 FLC 1002 D 1 HETATM 13 O OHB FLC . . . M 5 -0.356 -2.709 -13.441 1 57.54 ? OHB FLC 1002 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 13 #