data_5WJD # _model_server_result.job_id b-_oFqf0eqSwrsIoAh6neg _model_server_result.datetime_utc '2024-11-18 09:36:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5WJD # _exptl.entry_id 5WJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WJD _cell.length_a 41.685 _cell.length_b 62.643 _cell.length_c 63.758 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLN _struct_conn.ptnr1_label_seq_id 119 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLN _struct_conn.ptnr1_auth_seq_id 128 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N6A _struct_conn.ptnr2_label_comp_id ACO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ACO _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.299 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 5WJD _atom_sites.fract_transf_matrix[1][1] 0.023989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 201 1 ACO ACO . C 3 CIT A 1 202 2 CIT CIT . D 4 HOH A 1 301 100 HOH HOH . D 4 HOH A 2 302 91 HOH HOH . D 4 HOH A 3 303 54 HOH HOH . D 4 HOH A 4 304 53 HOH HOH . D 4 HOH A 5 305 38 HOH HOH . D 4 HOH A 6 306 27 HOH HOH . D 4 HOH A 7 307 1 HOH HOH . D 4 HOH A 8 308 92 HOH HOH . D 4 HOH A 9 309 85 HOH HOH . D 4 HOH A 10 310 114 HOH HOH . D 4 HOH A 11 311 105 HOH HOH . D 4 HOH A 12 312 34 HOH HOH . D 4 HOH A 13 313 43 HOH HOH . D 4 HOH A 14 314 104 HOH HOH . D 4 HOH A 15 315 5 HOH HOH . D 4 HOH A 16 316 122 HOH HOH . D 4 HOH A 17 317 14 HOH HOH . D 4 HOH A 18 318 6 HOH HOH . D 4 HOH A 19 319 36 HOH HOH . D 4 HOH A 20 320 23 HOH HOH . D 4 HOH A 21 321 21 HOH HOH . D 4 HOH A 22 322 3 HOH HOH . D 4 HOH A 23 323 25 HOH HOH . D 4 HOH A 24 324 15 HOH HOH . D 4 HOH A 25 325 73 HOH HOH . D 4 HOH A 26 326 33 HOH HOH . D 4 HOH A 27 327 17 HOH HOH . D 4 HOH A 28 328 22 HOH HOH . D 4 HOH A 29 329 46 HOH HOH . D 4 HOH A 30 330 10 HOH HOH . D 4 HOH A 31 331 16 HOH HOH . D 4 HOH A 32 332 64 HOH HOH . D 4 HOH A 33 333 4 HOH HOH . D 4 HOH A 34 334 7 HOH HOH . D 4 HOH A 35 335 94 HOH HOH . D 4 HOH A 36 336 47 HOH HOH . D 4 HOH A 37 337 50 HOH HOH . D 4 HOH A 38 338 90 HOH HOH . D 4 HOH A 39 339 65 HOH HOH . D 4 HOH A 40 340 75 HOH HOH . D 4 HOH A 41 341 9 HOH HOH . D 4 HOH A 42 342 28 HOH HOH . D 4 HOH A 43 343 31 HOH HOH . D 4 HOH A 44 344 117 HOH HOH . D 4 HOH A 45 345 62 HOH HOH . D 4 HOH A 46 346 72 HOH HOH . D 4 HOH A 47 347 109 HOH HOH . D 4 HOH A 48 348 49 HOH HOH . D 4 HOH A 49 349 8 HOH HOH . D 4 HOH A 50 350 35 HOH HOH . D 4 HOH A 51 351 68 HOH HOH . D 4 HOH A 52 352 88 HOH HOH . D 4 HOH A 53 353 120 HOH HOH . D 4 HOH A 54 354 124 HOH HOH . D 4 HOH A 55 355 44 HOH HOH . D 4 HOH A 56 356 77 HOH HOH . D 4 HOH A 57 357 12 HOH HOH . D 4 HOH A 58 358 2 HOH HOH . D 4 HOH A 59 359 32 HOH HOH . D 4 HOH A 60 360 55 HOH HOH . D 4 HOH A 61 361 41 HOH HOH . D 4 HOH A 62 362 51 HOH HOH . D 4 HOH A 63 363 95 HOH HOH . D 4 HOH A 64 364 57 HOH HOH . D 4 HOH A 65 365 76 HOH HOH . D 4 HOH A 66 366 112 HOH HOH . D 4 HOH A 67 367 89 HOH HOH . D 4 HOH A 68 368 29 HOH HOH . D 4 HOH A 69 369 59 HOH HOH . D 4 HOH A 70 370 40 HOH HOH . D 4 HOH A 71 371 52 HOH HOH . D 4 HOH A 72 372 24 HOH HOH . D 4 HOH A 73 373 60 HOH HOH . D 4 HOH A 74 374 45 HOH HOH . D 4 HOH A 75 375 79 HOH HOH . D 4 HOH A 76 376 18 HOH HOH . D 4 HOH A 77 377 26 HOH HOH . D 4 HOH A 78 378 97 HOH HOH . D 4 HOH A 79 379 42 HOH HOH . D 4 HOH A 80 380 48 HOH HOH . D 4 HOH A 81 381 56 HOH HOH . D 4 HOH A 82 382 108 HOH HOH . D 4 HOH A 83 383 82 HOH HOH . D 4 HOH A 84 384 30 HOH HOH . D 4 HOH A 85 385 80 HOH HOH . D 4 HOH A 86 386 66 HOH HOH . D 4 HOH A 87 387 116 HOH HOH . D 4 HOH A 88 388 84 HOH HOH . D 4 HOH A 89 389 20 HOH HOH . D 4 HOH A 90 390 39 HOH HOH . D 4 HOH A 91 391 13 HOH HOH . D 4 HOH A 92 392 98 HOH HOH . D 4 HOH A 93 393 11 HOH HOH . D 4 HOH A 94 394 69 HOH HOH . D 4 HOH A 95 395 63 HOH HOH . D 4 HOH A 96 396 61 HOH HOH . D 4 HOH A 97 397 58 HOH HOH . D 4 HOH A 98 398 129 HOH HOH . D 4 HOH A 99 399 107 HOH HOH . D 4 HOH A 100 400 83 HOH HOH . D 4 HOH A 101 401 71 HOH HOH . D 4 HOH A 102 402 121 HOH HOH . D 4 HOH A 103 403 106 HOH HOH . D 4 HOH A 104 404 103 HOH HOH . D 4 HOH A 105 405 102 HOH HOH . D 4 HOH A 106 406 113 HOH HOH . D 4 HOH A 107 407 87 HOH HOH . D 4 HOH A 108 408 78 HOH HOH . D 4 HOH A 109 409 70 HOH HOH . D 4 HOH A 110 410 118 HOH HOH . D 4 HOH A 111 411 67 HOH HOH . D 4 HOH A 112 412 125 HOH HOH . D 4 HOH A 113 413 93 HOH HOH . D 4 HOH A 114 414 123 HOH HOH . D 4 HOH A 115 415 126 HOH HOH . D 4 HOH A 116 416 110 HOH HOH . D 4 HOH A 117 417 119 HOH HOH . D 4 HOH A 118 418 96 HOH HOH . D 4 HOH A 119 419 37 HOH HOH . D 4 HOH A 120 420 86 HOH HOH . D 4 HOH A 121 421 99 HOH HOH . D 4 HOH A 122 422 115 HOH HOH . D 4 HOH A 123 423 127 HOH HOH . D 4 HOH A 124 424 81 HOH HOH . D 4 HOH A 125 425 128 HOH HOH . D 4 HOH A 126 426 74 HOH HOH . D 4 HOH A 127 427 101 HOH HOH . D 4 HOH A 128 428 111 HOH HOH . D 4 HOH A 129 429 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 56.047 16.722 15.534 1 31.66 ? N1A ACO 201 A 1 HETATM 2 C C2A ACO . . . B 2 56.45 16.627 16.818 1 30.79 ? C2A ACO 201 A 1 HETATM 3 N N3A ACO . . . B 2 55.632 16.22 17.805 1 31.08 ? N3A ACO 201 A 1 HETATM 4 C C4A ACO . . . B 2 54.314 15.883 17.507 1 28.4 ? C4A ACO 201 A 1 HETATM 5 C C5A ACO . . . B 2 53.854 15.966 16.198 1 27.39 ? C5A ACO 201 A 1 HETATM 6 C C6A ACO . . . B 2 54.794 16.42 15.153 1 33.9 ? C6A ACO 201 A 1 HETATM 7 N N6A ACO . . . B 2 54.374 16.53 13.762 1 41.41 ? N6A ACO 201 A 1 HETATM 8 N N7A ACO . . . B 2 52.524 15.575 16.201 1 33.35 ? N7A ACO 201 A 1 HETATM 9 C C8A ACO . . . B 2 52.188 15.266 17.476 1 30.94 ? C8A ACO 201 A 1 HETATM 10 N N9A ACO . . . B 2 53.224 15.443 18.278 1 32.65 ? N9A ACO 201 A 1 HETATM 11 C C1B ACO . . . B 2 53.258 15.198 19.64 1 31.89 ? C1B ACO 201 A 1 HETATM 12 C C2B ACO . . . B 2 52.067 15.759 20.372 1 32.33 ? C2B ACO 201 A 1 HETATM 13 O O2B ACO . . . B 2 52.4 16.971 21.045 1 36.11 ? O2B ACO 201 A 1 HETATM 14 C C3B ACO . . . B 2 51.748 14.741 21.381 1 34.66 ? C3B ACO 201 A 1 HETATM 15 O O3B ACO . . . B 2 52.507 15.039 22.571 1 35.37 ? O3B ACO 201 A 1 HETATM 16 P P3B ACO . . . B 2 52.036 14.434 23.988 1 46.18 ? P3B ACO 201 A 1 HETATM 17 O O7A ACO . . . B 2 52.113 12.955 24.002 1 47.72 ? O7A ACO 201 A 1 HETATM 18 O O8A ACO . . . B 2 53.001 14.722 25.028 1 41.93 ? O8A ACO 201 A 1 HETATM 19 O O9A ACO . . . B 2 50.561 14.907 24.371 1 43.75 ? O9A ACO 201 A 1 HETATM 20 C C4B ACO . . . B 2 52.196 13.467 20.79 1 32.92 ? C4B ACO 201 A 1 HETATM 21 O O4B ACO . . . B 2 53.218 13.762 19.819 1 25.72 ? O4B ACO 201 A 1 HETATM 22 C C5B ACO . . . B 2 51.043 12.682 20.143 1 29 ? C5B ACO 201 A 1 HETATM 23 O O5B ACO . . . B 2 50.005 13.595 19.787 1 29.65 ? O5B ACO 201 A 1 HETATM 24 P P1A ACO . . . B 2 48.699 13.146 18.974 1 20.5 ? P1A ACO 201 A 1 HETATM 25 O O1A ACO . . . B 2 47.544 13.871 19.533 1 27.92 ? O1A ACO 201 A 1 HETATM 26 O O2A ACO . . . B 2 48.357 11.743 19.216 1 20.69 ? O2A ACO 201 A 1 HETATM 27 O O3A ACO . . . B 2 48.919 13.486 17.455 1 23.42 ? O3A ACO 201 A 1 HETATM 28 P P2A ACO . . . B 2 47.862 13.41 16.256 1 25.19 ? P2A ACO 201 A 1 HETATM 29 O O4A ACO . . . B 2 46.516 12.947 16.697 1 24.2 ? O4A ACO 201 A 1 HETATM 30 O O5A ACO . . . B 2 47.562 14.743 15.714 1 22.88 ? O5A ACO 201 A 1 HETATM 31 O O6A ACO . . . B 2 48.454 12.472 15.114 1 24.27 ? O6A ACO 201 A 1 HETATM 32 C CBP ACO . . . B 2 49.747 12.612 13.12 1 23.81 ? CBP ACO 201 A 1 HETATM 33 C CCP ACO . . . B 2 49.797 12.716 14.641 1 22.69 ? CCP ACO 201 A 1 HETATM 34 C CDP ACO . . . B 2 49.483 11.19 12.737 1 22.94 ? CDP ACO 201 A 1 HETATM 35 C CEP ACO . . . B 2 51.061 13.061 12.543 1 25.07 ? CEP ACO 201 A 1 HETATM 36 C CAP ACO . . . B 2 48.591 13.538 12.636 1 24.39 ? CAP ACO 201 A 1 HETATM 37 O OAP ACO . . . B 2 48.937 14.837 12.94 1 26.75 ? OAP ACO 201 A 1 HETATM 38 C C9P ACO . . . B 2 48.313 13.449 11.154 1 23.5 ? C9P ACO 201 A 1 HETATM 39 O O9P ACO . . . B 2 47.464 12.69 10.724 1 22.31 ? O9P ACO 201 A 1 HETATM 40 N N8P ACO . . . B 2 49.037 14.286 10.227 1 24.46 ? N8P ACO 201 A 1 HETATM 41 C C7P ACO . . . B 2 48.747 14.197 8.835 1 28.97 ? C7P ACO 201 A 1 HETATM 42 C C6P ACO . . . B 2 49.317 12.893 8.203 1 26.4 ? C6P ACO 201 A 1 HETATM 43 C C5P ACO . . . B 2 50.788 12.529 8.524 1 30.43 ? C5P ACO 201 A 1 HETATM 44 O O5P ACO . . . B 2 51.646 13.356 8.419 1 28.96 ? O5P ACO 201 A 1 HETATM 45 N N4P ACO . . . B 2 51.111 11.21 8.949 1 28.56 ? N4P ACO 201 A 1 HETATM 46 C C3P ACO . . . B 2 52.495 10.877 9.248 1 27.67 ? C3P ACO 201 A 1 HETATM 47 C C2P ACO . . . B 2 53.274 10.699 7.955 1 37.1 ? C2P ACO 201 A 1 HETATM 48 S S1P ACO . . . B 2 54.661 9.593 8.235 1 50.62 ? S1P ACO 201 A 1 HETATM 49 C C ACO . . . B 2 54.106 7.902 8.015 1 42.06 ? C ACO 201 A 1 HETATM 50 O O ACO . . . B 2 52.951 7.667 7.701 1 35.28 ? O ACO 201 A 1 HETATM 51 C CH3 ACO . . . B 2 54.977 6.789 8.512 1 29.76 ? CH3 ACO 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 51 #