data_5WJF # _model_server_result.job_id Wxc94I28xllx_qzV1w1rcQ _model_server_result.datetime_utc '2024-10-12 23:27:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5WJF # _exptl.entry_id 5WJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WJF _cell.length_a 65.05 _cell.length_b 67.76 _cell.length_c 87.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 28 1_555 A SG CYS 16 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 10 A CYS 31 1_555 A SG CYS 23 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 26 A CYS 47 1_555 A SG CYS 40 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 A SG CYS 43 A CYS 64 1_555 A SG CYS 56 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 46 A CYS 67 1_555 A SG CYS 64 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 66 A CYS 87 1_555 A SG CYS 80 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 A SG CYS 72 A CYS 93 1_555 A SG CYS 77 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 A SG CYS 84 A CYS 105 1_555 A SG CYS 95 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf9 A SG CYS 98 A CYS 119 1_555 A SG CYS 112 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf10 A SG CYS 118 A CYS 139 1_555 A SG CYS 137 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 B SG CYS 7 B CYS 28 1_555 B SG CYS 16 B CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf12 B SG CYS 10 B CYS 31 1_555 B SG CYS 23 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 B SG CYS 26 B CYS 47 1_555 B SG CYS 40 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf14 B SG CYS 43 B CYS 64 1_555 B SG CYS 56 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 B SG CYS 46 B CYS 67 1_555 B SG CYS 64 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 B SG CYS 66 B CYS 87 1_555 B SG CYS 80 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf17 B SG CYS 72 B CYS 93 1_555 B SG CYS 77 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf18 B SG CYS 84 B CYS 105 1_555 B SG CYS 95 B CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf19 B SG CYS 98 B CYS 119 1_555 B SG CYS 112 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf20 B SG CYS 118 B CYS 139 1_555 B SG CYS 137 B CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 117 A ASN 138 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 B ND2 ASN 107 B ASN 128 1_555 F C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 5WJF _atom_sites.fract_transf_matrix[1][1] 0.015373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 201 162 NAG NAG . D 3 EDO A 1 202 401 EDO EDO . E 3 EDO A 1 203 404 EDO EDO . F 2 NAG B 1 201 162 NAG NAG . G 3 EDO B 1 202 403 EDO EDO . H 4 HOH A 1 301 4 HOH HOH . H 4 HOH A 2 302 59 HOH HOH . H 4 HOH A 3 303 65 HOH HOH . H 4 HOH A 4 304 119 HOH HOH . H 4 HOH A 5 305 88 HOH HOH . H 4 HOH A 6 306 1 HOH HOH . H 4 HOH A 7 307 20 HOH HOH . H 4 HOH A 8 308 44 HOH HOH . H 4 HOH A 9 309 104 HOH HOH . H 4 HOH A 10 310 10 HOH HOH . H 4 HOH A 11 311 121 HOH HOH . H 4 HOH A 12 312 30 HOH HOH . H 4 HOH A 13 313 68 HOH HOH . H 4 HOH A 14 314 57 HOH HOH . H 4 HOH A 15 315 64 HOH HOH . H 4 HOH A 16 316 38 HOH HOH . H 4 HOH A 17 317 61 HOH HOH . H 4 HOH A 18 318 110 HOH HOH . H 4 HOH A 19 319 101 HOH HOH . H 4 HOH A 20 320 107 HOH HOH . H 4 HOH A 21 321 34 HOH HOH . H 4 HOH A 22 322 52 HOH HOH . H 4 HOH A 23 323 2 HOH HOH . H 4 HOH A 24 324 114 HOH HOH . H 4 HOH A 25 325 117 HOH HOH . H 4 HOH A 26 326 113 HOH HOH . H 4 HOH A 27 327 7 HOH HOH . H 4 HOH A 28 328 32 HOH HOH . H 4 HOH A 29 329 105 HOH HOH . H 4 HOH A 30 330 55 HOH HOH . H 4 HOH A 31 331 80 HOH HOH . H 4 HOH A 32 332 71 HOH HOH . H 4 HOH A 33 333 89 HOH HOH . H 4 HOH A 34 334 25 HOH HOH . H 4 HOH A 35 335 22 HOH HOH . H 4 HOH A 36 336 23 HOH HOH . H 4 HOH A 37 337 73 HOH HOH . I 4 HOH B 1 301 67 HOH HOH . I 4 HOH B 2 302 17 HOH HOH . I 4 HOH B 3 303 31 HOH HOH . I 4 HOH B 4 304 120 HOH HOH . I 4 HOH B 5 305 12 HOH HOH . I 4 HOH B 6 306 11 HOH HOH . I 4 HOH B 7 307 1 HOH HOH . I 4 HOH B 8 308 77 HOH HOH . I 4 HOH B 9 309 15 HOH HOH . I 4 HOH B 10 310 115 HOH HOH . I 4 HOH B 11 311 43 HOH HOH . I 4 HOH B 12 312 99 HOH HOH . I 4 HOH B 13 313 96 HOH HOH . I 4 HOH B 14 314 95 HOH HOH . I 4 HOH B 15 315 111 HOH HOH . I 4 HOH B 16 316 72 HOH HOH . I 4 HOH B 17 317 51 HOH HOH . I 4 HOH B 18 318 69 HOH HOH . I 4 HOH B 19 319 33 HOH HOH . I 4 HOH B 20 320 39 HOH HOH . I 4 HOH B 21 321 16 HOH HOH . I 4 HOH B 22 322 2 HOH HOH . I 4 HOH B 23 323 92 HOH HOH . I 4 HOH B 24 324 13 HOH HOH . I 4 HOH B 25 325 91 HOH HOH . I 4 HOH B 26 326 103 HOH HOH . I 4 HOH B 27 327 84 HOH HOH . I 4 HOH B 28 328 47 HOH HOH . I 4 HOH B 29 329 109 HOH HOH . I 4 HOH B 30 330 45 HOH HOH . I 4 HOH B 31 331 8 HOH HOH . I 4 HOH B 32 332 36 HOH HOH . I 4 HOH B 33 333 18 HOH HOH . I 4 HOH B 34 334 70 HOH HOH . I 4 HOH B 35 335 112 HOH HOH . I 4 HOH B 36 336 106 HOH HOH . I 4 HOH B 37 337 53 HOH HOH . I 4 HOH B 38 338 14 HOH HOH . I 4 HOH B 39 339 98 HOH HOH . I 4 HOH B 40 340 108 HOH HOH . I 4 HOH B 41 341 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 79.986 96.012 30.316 1 74.31 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . E 3 80.895 95.176 31.041 1 73.74 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . E 3 78.788 95.185 29.859 1 74.32 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . E 3 77.944 94.846 30.969 1 73.81 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #