data_5WJK # _model_server_result.job_id cdHD6wXZANhiZg37rcWD8Q _model_server_result.datetime_utc '2024-11-04 20:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5WJK # _exptl.entry_id 5WJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WJK _cell.length_a 91.67 _cell.length_b 91.67 _cell.length_c 46.17 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 94 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.155 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 5WJK _atom_sites.fract_transf_matrix[1][1] 0.010909 _atom_sites.fract_transf_matrix[1][2] 0.006298 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 3 CL A 1 202 1 CL CL . D 3 CL A 1 203 2 CL CL . E 3 CL A 1 204 3 CL CL . F 3 CL A 1 205 4 CL CL . G 3 CL A 1 206 5 CL CL . H 4 SO4 A 1 207 1 SO4 SO4 . I 4 SO4 A 1 208 2 SO4 SO4 . J 4 SO4 A 1 209 3 SO4 SO4 . K 5 HOH A 1 301 14 HOH HOH . K 5 HOH A 2 302 64 HOH HOH . K 5 HOH A 3 303 44 HOH HOH . K 5 HOH A 4 304 31 HOH HOH . K 5 HOH A 5 305 42 HOH HOH . K 5 HOH A 6 306 2 HOH HOH . K 5 HOH A 7 307 83 HOH HOH . K 5 HOH A 8 308 76 HOH HOH . K 5 HOH A 9 309 54 HOH HOH . K 5 HOH A 10 310 7 HOH HOH . K 5 HOH A 11 311 70 HOH HOH . K 5 HOH A 12 312 3 HOH HOH . K 5 HOH A 13 313 5 HOH HOH . K 5 HOH A 14 314 24 HOH HOH . K 5 HOH A 15 315 23 HOH HOH . K 5 HOH A 16 316 16 HOH HOH . K 5 HOH A 17 317 51 HOH HOH . K 5 HOH A 18 318 65 HOH HOH . K 5 HOH A 19 319 13 HOH HOH . K 5 HOH A 20 320 56 HOH HOH . K 5 HOH A 21 321 22 HOH HOH . K 5 HOH A 22 322 63 HOH HOH . K 5 HOH A 23 323 10 HOH HOH . K 5 HOH A 24 324 33 HOH HOH . K 5 HOH A 25 325 20 HOH HOH . K 5 HOH A 26 326 28 HOH HOH . K 5 HOH A 27 327 21 HOH HOH . K 5 HOH A 28 328 8 HOH HOH . K 5 HOH A 29 329 81 HOH HOH . K 5 HOH A 30 330 50 HOH HOH . K 5 HOH A 31 331 26 HOH HOH . K 5 HOH A 32 332 90 HOH HOH . K 5 HOH A 33 333 41 HOH HOH . K 5 HOH A 34 334 29 HOH HOH . K 5 HOH A 35 335 40 HOH HOH . K 5 HOH A 36 336 35 HOH HOH . K 5 HOH A 37 337 32 HOH HOH . K 5 HOH A 38 338 6 HOH HOH . K 5 HOH A 39 339 87 HOH HOH . K 5 HOH A 40 340 79 HOH HOH . K 5 HOH A 41 341 1 HOH HOH . K 5 HOH A 42 342 15 HOH HOH . K 5 HOH A 43 343 9 HOH HOH . K 5 HOH A 44 344 85 HOH HOH . K 5 HOH A 45 345 47 HOH HOH . K 5 HOH A 46 346 34 HOH HOH . K 5 HOH A 47 347 52 HOH HOH . K 5 HOH A 48 348 88 HOH HOH . K 5 HOH A 49 349 43 HOH HOH . K 5 HOH A 50 350 49 HOH HOH . K 5 HOH A 51 351 48 HOH HOH . K 5 HOH A 52 352 77 HOH HOH . K 5 HOH A 53 353 4 HOH HOH . K 5 HOH A 54 354 11 HOH HOH . K 5 HOH A 55 355 58 HOH HOH . K 5 HOH A 56 356 25 HOH HOH . K 5 HOH A 57 357 82 HOH HOH . K 5 HOH A 58 358 27 HOH HOH . K 5 HOH A 59 359 80 HOH HOH . K 5 HOH A 60 360 45 HOH HOH . K 5 HOH A 61 361 30 HOH HOH . K 5 HOH A 62 362 60 HOH HOH . K 5 HOH A 63 363 46 HOH HOH . K 5 HOH A 64 364 71 HOH HOH . K 5 HOH A 65 365 12 HOH HOH . K 5 HOH A 66 366 37 HOH HOH . K 5 HOH A 67 367 18 HOH HOH . K 5 HOH A 68 368 69 HOH HOH . K 5 HOH A 69 369 73 HOH HOH . K 5 HOH A 70 370 17 HOH HOH . K 5 HOH A 71 371 84 HOH HOH . K 5 HOH A 72 372 62 HOH HOH . K 5 HOH A 73 373 57 HOH HOH . K 5 HOH A 74 374 66 HOH HOH . K 5 HOH A 75 375 75 HOH HOH . K 5 HOH A 76 376 38 HOH HOH . K 5 HOH A 77 377 78 HOH HOH . K 5 HOH A 78 378 67 HOH HOH . K 5 HOH A 79 379 72 HOH HOH . K 5 HOH A 80 380 36 HOH HOH . K 5 HOH A 81 381 89 HOH HOH . K 5 HOH A 82 382 19 HOH HOH . K 5 HOH A 83 383 74 HOH HOH . K 5 HOH A 84 384 53 HOH HOH . K 5 HOH A 85 385 86 HOH HOH . K 5 HOH A 86 386 39 HOH HOH . K 5 HOH A 87 387 55 HOH HOH . K 5 HOH A 88 388 61 HOH HOH . K 5 HOH A 89 389 59 HOH HOH . K 5 HOH A 90 390 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 16.984 -34.22 -5.497 1 25.47 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 14.009 -34.969 -1.706 1 22 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 10.929 -31.575 -3.361 1 21.86 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 13.813 -30.809 -7.134 1 21.74 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 16.454 -34.717 -4.33 1 26.44 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 17.037 -35.747 -3.489 1 23.27 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 16.208 -35.947 -2.441 1 24.19 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 15.076 -35.059 -2.587 1 30.27 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 16.358 -36.929 -1.259 1 26.77 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 18.371 -36.478 -3.763 1 35.82 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 19.452 -35.986 -2.788 1 36.76 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 19.548 -34.464 -2.769 1 41.28 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 19.75 -33.824 -3.837 1 36.91 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 19.412 -33.874 -1.663 1 46.76 -1 O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 12.916 -34.13 -1.813 1 26.01 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 11.795 -34.036 -0.884 1 21.03 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 10.955 -33.092 -1.371 1 29 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 11.512 -32.557 -2.589 1 26.65 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 11.611 -34.87 0.421 1 20.86 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 9.624 -32.594 -0.778 1 23.52 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 8.676 -33.474 -0.494 1 20.19 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 11.425 -31.066 -4.531 1 16.05 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 10.825 -30.04 -5.365 1 28.42 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 11.641 -29.824 -6.421 1 26.66 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 12.761 -30.716 -6.266 1 28.49 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 9.494 -29.335 -5.06 1 21.18 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 11.539 -28.857 -7.626 1 32.1 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 10.44 -28.716 -8.364 1 33.28 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 14.901 -31.641 -7.025 1 29.51 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 15.945 -31.644 -7.997 1 30.08 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 16.935 -32.688 -7.508 1 23.85 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 16.403 -33.233 -6.285 1 32.96 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 15.999 -30.749 -9.25 1 34 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 18.215 -33.078 -8.244 1 36.54 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 17.639 -33.793 -9.465 1 40.4 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 18.501 -34.944 -9.897 1 56.06 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 18.312 -36.066 -9.374 1 56.63 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 19.38 -34.726 -10.758 1 58.3 -1 O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 15.256 -34.317 -3.747 1 26.14 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 12.684 -33.245 -2.859 1 19.97 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 12.594 -31.47 -5.129 1 26.22 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 15.188 -32.593 -6.051 1 25.2 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 13.987 -32.776 -4.354 1 25 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #