data_5WK9 # _model_server_result.job_id s-uF8akcWXdZ_WYg12XS3A _model_server_result.datetime_utc '2024-11-20 07:34:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5WK9 # _exptl.entry_id 5WK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.233 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAMPHOR _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.99 _cell.angle_gamma 90 _cell.entry_id 5WK9 _cell.length_a 56.95 _cell.length_b 58.86 _cell.length_c 57.28 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 85 A GLU 84 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc2 A O GLY 94 A GLY 93 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc3 A O GLU 95 A GLU 94 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc4 A O TYR 97 A TYR 96 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc5 A SG CYS 358 A CYS 357 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 E K K . A K 504 1_555 F O HOH . A HOH 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc7 E K K . A K 504 1_555 F O HOH . A HOH 792 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? # _chem_comp.formula 'C10 H16 O' _chem_comp.formula_weight 152.233 _chem_comp.id CAM _chem_comp.mon_nstd_flag . _chem_comp.name CAMPHOR _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CAM sing 70 n n C1 C6 CAM sing 71 n n C1 C7 CAM sing 72 n n C1 C10 CAM sing 73 n n C2 O CAM doub 74 n n C2 C3 CAM sing 75 n n C3 C4 CAM sing 76 n n C3 H31 CAM sing 77 n n C3 H32 CAM sing 78 n n C4 C5 CAM sing 79 n n C4 C7 CAM sing 80 n n C4 H4 CAM sing 81 n n C5 C6 CAM sing 82 n n C5 H51 CAM sing 83 n n C5 H52 CAM sing 84 n n C6 H61 CAM sing 85 n n C6 H62 CAM sing 86 n n C7 C8 CAM sing 87 n n C7 C9 CAM sing 88 n n C8 H81 CAM sing 89 n n C8 H82 CAM sing 90 n n C8 H83 CAM sing 91 n n C9 H91 CAM sing 92 n n C9 H92 CAM sing 93 n n C9 H93 CAM sing 94 n n C10 H101 CAM sing 95 n n C10 H102 CAM sing 96 n n C10 H103 CAM sing 97 n n # _atom_sites.entry_id 5WK9 _atom_sites.fract_transf_matrix[1][1] 0.017559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 418 HEM HEM . C 3 CYN A 1 502 419 CYN CYN . D 4 CAM A 1 503 422 CAM CAM . E 5 K A 1 504 1 K K . F 6 HOH A 1 601 184 HOH HOH . F 6 HOH A 2 602 153 HOH HOH . F 6 HOH A 3 603 205 HOH HOH . F 6 HOH A 4 604 83 HOH HOH . F 6 HOH A 5 605 206 HOH HOH . F 6 HOH A 6 606 190 HOH HOH . F 6 HOH A 7 607 145 HOH HOH . F 6 HOH A 8 608 71 HOH HOH . F 6 HOH A 9 609 168 HOH HOH . F 6 HOH A 10 610 70 HOH HOH . F 6 HOH A 11 611 45 HOH HOH . F 6 HOH A 12 612 26 HOH HOH . F 6 HOH A 13 613 32 HOH HOH . F 6 HOH A 14 614 59 HOH HOH . F 6 HOH A 15 615 128 HOH HOH . F 6 HOH A 16 616 132 HOH HOH . F 6 HOH A 17 617 105 HOH HOH . F 6 HOH A 18 618 38 HOH HOH . F 6 HOH A 19 619 186 HOH HOH . F 6 HOH A 20 620 124 HOH HOH . F 6 HOH A 21 621 198 HOH HOH . F 6 HOH A 22 622 14 HOH HOH . F 6 HOH A 23 623 58 HOH HOH . F 6 HOH A 24 624 20 HOH HOH . F 6 HOH A 25 625 52 HOH HOH . F 6 HOH A 26 626 84 HOH HOH . F 6 HOH A 27 627 6 HOH HOH . F 6 HOH A 28 628 55 HOH HOH . F 6 HOH A 29 629 111 HOH HOH . F 6 HOH A 30 630 35 HOH HOH . F 6 HOH A 31 631 5 HOH HOH . F 6 HOH A 32 632 140 HOH HOH . F 6 HOH A 33 633 89 HOH HOH . F 6 HOH A 34 634 189 HOH HOH . F 6 HOH A 35 635 99 HOH HOH . F 6 HOH A 36 636 141 HOH HOH . F 6 HOH A 37 637 118 HOH HOH . F 6 HOH A 38 638 106 HOH HOH . F 6 HOH A 39 639 199 HOH HOH . F 6 HOH A 40 640 185 HOH HOH . F 6 HOH A 41 641 78 HOH HOH . F 6 HOH A 42 642 3 HOH HOH . F 6 HOH A 43 643 34 HOH HOH . F 6 HOH A 44 644 166 HOH HOH . F 6 HOH A 45 645 137 HOH HOH . F 6 HOH A 46 646 9 HOH HOH . F 6 HOH A 47 647 176 HOH HOH . F 6 HOH A 48 648 40 HOH HOH . F 6 HOH A 49 649 8 HOH HOH . F 6 HOH A 50 650 31 HOH HOH . F 6 HOH A 51 651 100 HOH HOH . F 6 HOH A 52 652 79 HOH HOH . F 6 HOH A 53 653 101 HOH HOH . F 6 HOH A 54 654 15 HOH HOH . F 6 HOH A 55 655 19 HOH HOH . F 6 HOH A 56 656 187 HOH HOH . F 6 HOH A 57 657 1 HOH HOH . F 6 HOH A 58 658 201 HOH HOH . F 6 HOH A 59 659 155 HOH HOH . F 6 HOH A 60 660 114 HOH HOH . F 6 HOH A 61 661 170 HOH HOH . F 6 HOH A 62 662 48 HOH HOH . F 6 HOH A 63 663 107 HOH HOH . F 6 HOH A 64 664 67 HOH HOH . F 6 HOH A 65 665 46 HOH HOH . F 6 HOH A 66 666 62 HOH HOH . F 6 HOH A 67 667 13 HOH HOH . F 6 HOH A 68 668 42 HOH HOH . F 6 HOH A 69 669 25 HOH HOH . F 6 HOH A 70 670 49 HOH HOH . F 6 HOH A 71 671 196 HOH HOH . F 6 HOH A 72 672 10 HOH HOH . F 6 HOH A 73 673 63 HOH HOH . F 6 HOH A 74 674 157 HOH HOH . F 6 HOH A 75 675 24 HOH HOH . F 6 HOH A 76 676 11 HOH HOH . F 6 HOH A 77 677 93 HOH HOH . F 6 HOH A 78 678 44 HOH HOH . F 6 HOH A 79 679 75 HOH HOH . F 6 HOH A 80 680 125 HOH HOH . F 6 HOH A 81 681 33 HOH HOH . F 6 HOH A 82 682 7 HOH HOH . F 6 HOH A 83 683 17 HOH HOH . F 6 HOH A 84 684 77 HOH HOH . F 6 HOH A 85 685 64 HOH HOH . F 6 HOH A 86 686 16 HOH HOH . F 6 HOH A 87 687 73 HOH HOH . F 6 HOH A 88 688 147 HOH HOH . F 6 HOH A 89 689 160 HOH HOH . F 6 HOH A 90 690 54 HOH HOH . F 6 HOH A 91 691 90 HOH HOH . F 6 HOH A 92 692 18 HOH HOH . F 6 HOH A 93 693 21 HOH HOH . F 6 HOH A 94 694 28 HOH HOH . F 6 HOH A 95 695 144 HOH HOH . F 6 HOH A 96 696 154 HOH HOH . F 6 HOH A 97 697 12 HOH HOH . F 6 HOH A 98 698 178 HOH HOH . F 6 HOH A 99 699 169 HOH HOH . F 6 HOH A 100 700 69 HOH HOH . F 6 HOH A 101 701 2 HOH HOH . F 6 HOH A 102 702 47 HOH HOH . F 6 HOH A 103 703 98 HOH HOH . F 6 HOH A 104 704 4 HOH HOH . F 6 HOH A 105 705 143 HOH HOH . F 6 HOH A 106 706 27 HOH HOH . F 6 HOH A 107 707 109 HOH HOH . F 6 HOH A 108 708 81 HOH HOH . F 6 HOH A 109 709 177 HOH HOH . F 6 HOH A 110 710 22 HOH HOH . F 6 HOH A 111 711 115 HOH HOH . F 6 HOH A 112 712 39 HOH HOH . F 6 HOH A 113 713 138 HOH HOH . F 6 HOH A 114 714 94 HOH HOH . F 6 HOH A 115 715 29 HOH HOH . F 6 HOH A 116 716 135 HOH HOH . F 6 HOH A 117 717 65 HOH HOH . F 6 HOH A 118 718 104 HOH HOH . F 6 HOH A 119 719 23 HOH HOH . F 6 HOH A 120 720 159 HOH HOH . F 6 HOH A 121 721 61 HOH HOH . F 6 HOH A 122 722 51 HOH HOH . F 6 HOH A 123 723 165 HOH HOH . F 6 HOH A 124 724 97 HOH HOH . F 6 HOH A 125 725 85 HOH HOH . F 6 HOH A 126 726 188 HOH HOH . F 6 HOH A 127 727 66 HOH HOH . F 6 HOH A 128 728 134 HOH HOH . F 6 HOH A 129 729 112 HOH HOH . F 6 HOH A 130 730 56 HOH HOH . F 6 HOH A 131 731 120 HOH HOH . F 6 HOH A 132 732 60 HOH HOH . F 6 HOH A 133 733 195 HOH HOH . F 6 HOH A 134 734 36 HOH HOH . F 6 HOH A 135 735 74 HOH HOH . F 6 HOH A 136 736 156 HOH HOH . F 6 HOH A 137 737 80 HOH HOH . F 6 HOH A 138 738 163 HOH HOH . F 6 HOH A 139 739 96 HOH HOH . F 6 HOH A 140 740 202 HOH HOH . F 6 HOH A 141 741 121 HOH HOH . F 6 HOH A 142 742 76 HOH HOH . F 6 HOH A 143 743 180 HOH HOH . F 6 HOH A 144 744 116 HOH HOH . F 6 HOH A 145 745 86 HOH HOH . F 6 HOH A 146 746 200 HOH HOH . F 6 HOH A 147 747 43 HOH HOH . F 6 HOH A 148 748 152 HOH HOH . F 6 HOH A 149 749 183 HOH HOH . F 6 HOH A 150 750 136 HOH HOH . F 6 HOH A 151 751 53 HOH HOH . F 6 HOH A 152 752 181 HOH HOH . F 6 HOH A 153 753 92 HOH HOH . F 6 HOH A 154 754 122 HOH HOH . F 6 HOH A 155 755 164 HOH HOH . F 6 HOH A 156 756 150 HOH HOH . F 6 HOH A 157 757 95 HOH HOH . F 6 HOH A 158 758 129 HOH HOH . F 6 HOH A 159 759 82 HOH HOH . F 6 HOH A 160 760 113 HOH HOH . F 6 HOH A 161 761 68 HOH HOH . F 6 HOH A 162 762 194 HOH HOH . F 6 HOH A 163 763 158 HOH HOH . F 6 HOH A 164 764 126 HOH HOH . F 6 HOH A 165 765 182 HOH HOH . F 6 HOH A 166 766 72 HOH HOH . F 6 HOH A 167 767 117 HOH HOH . F 6 HOH A 168 768 171 HOH HOH . F 6 HOH A 169 769 108 HOH HOH . F 6 HOH A 170 770 30 HOH HOH . F 6 HOH A 171 771 162 HOH HOH . F 6 HOH A 172 772 174 HOH HOH . F 6 HOH A 173 773 37 HOH HOH . F 6 HOH A 174 774 197 HOH HOH . F 6 HOH A 175 775 148 HOH HOH . F 6 HOH A 176 776 149 HOH HOH . F 6 HOH A 177 777 142 HOH HOH . F 6 HOH A 178 778 172 HOH HOH . F 6 HOH A 179 779 207 HOH HOH . F 6 HOH A 180 780 41 HOH HOH . F 6 HOH A 181 781 192 HOH HOH . F 6 HOH A 182 782 50 HOH HOH . F 6 HOH A 183 783 204 HOH HOH . F 6 HOH A 184 784 179 HOH HOH . F 6 HOH A 185 785 193 HOH HOH . F 6 HOH A 186 786 175 HOH HOH . F 6 HOH A 187 787 161 HOH HOH . F 6 HOH A 188 788 87 HOH HOH . F 6 HOH A 189 789 208 HOH HOH . F 6 HOH A 190 790 139 HOH HOH . F 6 HOH A 191 791 133 HOH HOH . F 6 HOH A 192 792 191 HOH HOH . F 6 HOH A 193 793 127 HOH HOH . F 6 HOH A 194 794 88 HOH HOH . F 6 HOH A 195 795 130 HOH HOH . F 6 HOH A 196 796 203 HOH HOH . F 6 HOH A 197 797 146 HOH HOH . F 6 HOH A 198 798 173 HOH HOH . F 6 HOH A 199 799 119 HOH HOH . F 6 HOH A 200 800 123 HOH HOH . F 6 HOH A 201 801 151 HOH HOH . F 6 HOH A 202 802 131 HOH HOH . F 6 HOH A 203 803 91 HOH HOH . F 6 HOH A 204 804 102 HOH HOH . F 6 HOH A 205 805 103 HOH HOH . F 6 HOH A 206 806 110 HOH HOH . F 6 HOH A 207 807 57 HOH HOH . F 6 HOH A 208 808 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CAM . . . D 4 61.941 -7.678 9.962 1 34.25 ? C1 CAM 503 A 1 HETATM 2 C C2 CAM . . . D 4 60.467 -7.599 9.879 1 34.27 ? C2 CAM 503 A 1 HETATM 3 O O CAM . . . D 4 59.778 -6.496 9.922 1 32.83 ? O CAM 503 A 1 HETATM 4 C C3 CAM . . . D 4 59.915 -8.976 9.73 1 36.8 ? C3 CAM 503 A 1 HETATM 5 C C4 CAM . . . D 4 61.188 -9.735 9.675 1 31.54 ? C4 CAM 503 A 1 HETATM 6 C C5 CAM . . . D 4 61.78 -9.37 8.348 1 30.06 ? C5 CAM 503 A 1 HETATM 7 C C6 CAM . . . D 4 62.332 -7.985 8.549 1 35.81 ? C6 CAM 503 A 1 HETATM 8 C C7 CAM . . . D 4 62.101 -9.016 10.628 1 34.2 ? C7 CAM 503 A 1 HETATM 9 C C8 CAM . . . D 4 61.559 -9.011 12.012 1 23.69 ? C8 CAM 503 A 1 HETATM 10 C C9 CAM . . . D 4 63.48 -9.563 10.657 1 29.47 ? C9 CAM 503 A 1 HETATM 11 C C10 CAM . . . D 4 62.563 -6.475 10.574 1 40.04 ? C10 CAM 503 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #