data_5WKJ # _model_server_result.job_id e0itVo_cJ9KJLmgbUyMeHw _model_server_result.datetime_utc '2024-11-24 21:06:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5WKJ # _exptl.entry_id 5WKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.25 _cell.angle_gamma 90 _cell.entry_id 5WKJ _cell.length_a 101.807 _cell.length_b 58.292 _cell.length_c 49.785 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.851021 0 46.078034 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 155 A CYS 148 1_555 D C21 B1S . A B1S 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.794 ? covale ? covale2 A SG CYS 155 A CYS 148 1_555 E C21 K36 . A K36 404 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.81 ? metalc ? metalc1 A O THR 108 A THR 101 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc2 B CA CA . A CA 401 1_555 F O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc3 B CA CA . A CA 401 1_555 F O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc4 B CA CA . A CA 401 1_555 F O HOH . A HOH 564 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc5 B CA CA . A CA 401 1_555 F O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? metalc ? metalc6 B CA CA . A CA 401 1_555 F O HOH . A HOH 587 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 B CA CA . A CA 401 1_555 F O HOH . A HOH 662 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc8 C CA CA . A CA 402 1_555 F O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc9 C CA CA . A CA 402 1_555 F O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc10 C CA CA . A CA 402 1_555 F O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc11 C CA CA . A CA 402 1_555 F O HOH . A HOH 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WKJ _atom_sites.fract_transf_matrix[1][1] 0.009823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004018 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 2 CA A 1 402 2 CA CA . D 3 B1S A 1 403 1 B1S K36 . E 4 K36 A 1 404 1 K36 K36 . F 5 HOH A 1 501 95 HOH HOH . F 5 HOH A 2 502 45 HOH HOH . F 5 HOH A 3 503 100 HOH HOH . F 5 HOH A 4 504 114 HOH HOH . F 5 HOH A 5 505 108 HOH HOH . F 5 HOH A 6 506 52 HOH HOH . F 5 HOH A 7 507 65 HOH HOH . F 5 HOH A 8 508 72 HOH HOH . F 5 HOH A 9 509 5 HOH HOH . F 5 HOH A 10 510 76 HOH HOH . F 5 HOH A 11 511 70 HOH HOH . F 5 HOH A 12 512 39 HOH HOH . F 5 HOH A 13 513 168 HOH HOH . F 5 HOH A 14 514 98 HOH HOH . F 5 HOH A 15 515 131 HOH HOH . F 5 HOH A 16 516 91 HOH HOH . F 5 HOH A 17 517 170 HOH HOH . F 5 HOH A 18 518 46 HOH HOH . F 5 HOH A 19 519 110 HOH HOH . F 5 HOH A 20 520 178 HOH HOH . F 5 HOH A 21 521 2 HOH HOH . F 5 HOH A 22 522 89 HOH HOH . F 5 HOH A 23 523 126 HOH HOH . F 5 HOH A 24 524 37 HOH HOH . F 5 HOH A 25 525 78 HOH HOH . F 5 HOH A 26 526 94 HOH HOH . F 5 HOH A 27 527 1 HOH HOH . F 5 HOH A 28 528 87 HOH HOH . F 5 HOH A 29 529 30 HOH HOH . F 5 HOH A 30 530 154 HOH HOH . F 5 HOH A 31 531 19 HOH HOH . F 5 HOH A 32 532 9 HOH HOH . F 5 HOH A 33 533 18 HOH HOH . F 5 HOH A 34 534 50 HOH HOH . F 5 HOH A 35 535 53 HOH HOH . F 5 HOH A 36 536 61 HOH HOH . F 5 HOH A 37 537 20 HOH HOH . F 5 HOH A 38 538 81 HOH HOH . F 5 HOH A 39 539 64 HOH HOH . F 5 HOH A 40 540 32 HOH HOH . F 5 HOH A 41 541 3 HOH HOH . F 5 HOH A 42 542 6 HOH HOH . F 5 HOH A 43 543 125 HOH HOH . F 5 HOH A 44 544 58 HOH HOH . F 5 HOH A 45 545 75 HOH HOH . F 5 HOH A 46 546 22 HOH HOH . F 5 HOH A 47 547 21 HOH HOH . F 5 HOH A 48 548 92 HOH HOH . F 5 HOH A 49 549 60 HOH HOH . F 5 HOH A 50 550 40 HOH HOH . F 5 HOH A 51 551 124 HOH HOH . F 5 HOH A 52 552 34 HOH HOH . F 5 HOH A 53 553 105 HOH HOH . F 5 HOH A 54 554 134 HOH HOH . F 5 HOH A 55 555 11 HOH HOH . F 5 HOH A 56 556 8 HOH HOH . F 5 HOH A 57 557 31 HOH HOH . F 5 HOH A 58 558 23 HOH HOH . F 5 HOH A 59 559 169 HOH HOH . F 5 HOH A 60 560 123 HOH HOH . F 5 HOH A 61 561 36 HOH HOH . F 5 HOH A 62 562 121 HOH HOH . F 5 HOH A 63 563 26 HOH HOH . F 5 HOH A 64 564 141 HOH HOH . F 5 HOH A 65 565 68 HOH HOH . F 5 HOH A 66 566 15 HOH HOH . F 5 HOH A 67 567 25 HOH HOH . F 5 HOH A 68 568 59 HOH HOH . F 5 HOH A 69 569 93 HOH HOH . F 5 HOH A 70 570 7 HOH HOH . F 5 HOH A 71 571 118 HOH HOH . F 5 HOH A 72 572 79 HOH HOH . F 5 HOH A 73 573 16 HOH HOH . F 5 HOH A 74 574 14 HOH HOH . F 5 HOH A 75 575 71 HOH HOH . F 5 HOH A 76 576 56 HOH HOH . F 5 HOH A 77 577 107 HOH HOH . F 5 HOH A 78 578 57 HOH HOH . F 5 HOH A 79 579 155 HOH HOH . F 5 HOH A 80 580 86 HOH HOH . F 5 HOH A 81 581 10 HOH HOH . F 5 HOH A 82 582 48 HOH HOH . F 5 HOH A 83 583 140 HOH HOH . F 5 HOH A 84 584 96 HOH HOH . F 5 HOH A 85 585 167 HOH HOH . F 5 HOH A 86 586 67 HOH HOH . F 5 HOH A 87 587 142 HOH HOH . F 5 HOH A 88 588 55 HOH HOH . F 5 HOH A 89 589 90 HOH HOH . F 5 HOH A 90 590 128 HOH HOH . F 5 HOH A 91 591 166 HOH HOH . F 5 HOH A 92 592 51 HOH HOH . F 5 HOH A 93 593 106 HOH HOH . F 5 HOH A 94 594 162 HOH HOH . F 5 HOH A 95 595 63 HOH HOH . F 5 HOH A 96 596 54 HOH HOH . F 5 HOH A 97 597 42 HOH HOH . F 5 HOH A 98 598 43 HOH HOH . F 5 HOH A 99 599 29 HOH HOH . F 5 HOH A 100 600 83 HOH HOH . F 5 HOH A 101 601 47 HOH HOH . F 5 HOH A 102 602 12 HOH HOH . F 5 HOH A 103 603 112 HOH HOH . F 5 HOH A 104 604 158 HOH HOH . F 5 HOH A 105 605 44 HOH HOH . F 5 HOH A 106 606 66 HOH HOH . F 5 HOH A 107 607 4 HOH HOH . F 5 HOH A 108 608 153 HOH HOH . F 5 HOH A 109 609 69 HOH HOH . F 5 HOH A 110 610 148 HOH HOH . F 5 HOH A 111 611 27 HOH HOH . F 5 HOH A 112 612 74 HOH HOH . F 5 HOH A 113 613 160 HOH HOH . F 5 HOH A 114 614 38 HOH HOH . F 5 HOH A 115 615 115 HOH HOH . F 5 HOH A 116 616 150 HOH HOH . F 5 HOH A 117 617 172 HOH HOH . F 5 HOH A 118 618 35 HOH HOH . F 5 HOH A 119 619 136 HOH HOH . F 5 HOH A 120 620 176 HOH HOH . F 5 HOH A 121 621 122 HOH HOH . F 5 HOH A 122 622 13 HOH HOH . F 5 HOH A 123 623 41 HOH HOH . F 5 HOH A 124 624 73 HOH HOH . F 5 HOH A 125 625 117 HOH HOH . F 5 HOH A 126 626 133 HOH HOH . F 5 HOH A 127 627 62 HOH HOH . F 5 HOH A 128 628 173 HOH HOH . F 5 HOH A 129 629 113 HOH HOH . F 5 HOH A 130 630 120 HOH HOH . F 5 HOH A 131 631 135 HOH HOH . F 5 HOH A 132 632 24 HOH HOH . F 5 HOH A 133 633 144 HOH HOH . F 5 HOH A 134 634 146 HOH HOH . F 5 HOH A 135 635 129 HOH HOH . F 5 HOH A 136 636 151 HOH HOH . F 5 HOH A 137 637 111 HOH HOH . F 5 HOH A 138 638 119 HOH HOH . F 5 HOH A 139 639 161 HOH HOH . F 5 HOH A 140 640 104 HOH HOH . F 5 HOH A 141 641 102 HOH HOH . F 5 HOH A 142 642 49 HOH HOH . F 5 HOH A 143 643 175 HOH HOH . F 5 HOH A 144 644 137 HOH HOH . F 5 HOH A 145 645 147 HOH HOH . F 5 HOH A 146 646 174 HOH HOH . F 5 HOH A 147 647 171 HOH HOH . F 5 HOH A 148 648 149 HOH HOH . F 5 HOH A 149 649 77 HOH HOH . F 5 HOH A 150 650 179 HOH HOH . F 5 HOH A 151 651 80 HOH HOH . F 5 HOH A 152 652 143 HOH HOH . F 5 HOH A 153 653 99 HOH HOH . F 5 HOH A 154 654 165 HOH HOH . F 5 HOH A 155 655 130 HOH HOH . F 5 HOH A 156 656 101 HOH HOH . F 5 HOH A 157 657 132 HOH HOH . F 5 HOH A 158 658 103 HOH HOH . F 5 HOH A 159 659 159 HOH HOH . F 5 HOH A 160 660 85 HOH HOH . F 5 HOH A 161 661 139 HOH HOH . F 5 HOH A 162 662 145 HOH HOH . F 5 HOH A 163 663 88 HOH HOH . F 5 HOH A 164 664 116 HOH HOH . F 5 HOH A 165 665 127 HOH HOH . F 5 HOH A 166 666 33 HOH HOH . F 5 HOH A 167 667 177 HOH HOH . F 5 HOH A 168 668 157 HOH HOH . F 5 HOH A 169 669 28 HOH HOH . F 5 HOH A 170 670 156 HOH HOH . F 5 HOH A 171 671 84 HOH HOH . F 5 HOH A 172 672 163 HOH HOH . F 5 HOH A 173 673 109 HOH HOH . F 5 HOH A 174 674 152 HOH HOH . F 5 HOH A 175 675 164 HOH HOH . F 5 HOH A 176 676 97 HOH HOH . F 5 HOH A 177 677 17 HOH HOH . F 5 HOH A 178 678 82 HOH HOH . F 5 HOH A 179 679 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -22.591 _atom_site.Cartn_y -10.885 _atom_site.Cartn_z 12.459 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 68.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #