data_5WL0 # _model_server_result.job_id 1PjfivrRixv9Yfswln9RKw _model_server_result.datetime_utc '2024-11-29 01:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wl0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5WL0 # _exptl.entry_id 5WL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.23 _cell.angle_gamma 90 _cell.entry_id 5WL0 _cell.length_a 142.413 _cell.length_b 56.752 _cell.length_c 82.014 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H19 F2 N5 O2' _chem_comp.formula_weight 399.394 _chem_comp.id 21G _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[[5-fluoro-2-(5-fluoro-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid;VX787;(2S,3S)-3-((5-fluoro-2-(5-fluoro-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl)amino)bicyclo[2.2.2]octane-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C5 21G sing 1 n y N9 C8 21G sing 2 n y N4 C5 21G sing 3 n y N4 C3 21G doub 4 n y C5 C6 21G doub 5 n y C8 C7 21G doub 6 n y C3 C2 21G sing 7 n y C6 C7 21G sing 8 n y C6 C1 21G sing 9 n y C7 C11 21G sing 10 n n C2 C1 21G doub 11 n y C2 F32 21G sing 12 n n N12 C11 21G doub 13 n y N12 C13 21G sing 14 n y C11 N16 21G sing 15 n y C13 C14 21G doub 16 n y N16 C15 21G doub 17 n y C15 C14 21G sing 18 n y C15 N17 21G sing 19 n n C14 F31 21G sing 20 n n O30 C28 21G doub 21 n n N17 C18 21G sing 22 n n C18 C25 21G sing 23 n n C18 C20 21G sing 24 n n C28 O29 21G sing 25 n n C28 C20 21G sing 26 n n C24 C25 21G sing 27 n n C24 C23 21G sing 28 n n C25 C26 21G sing 29 n n C20 C22 21G sing 30 n n C23 C22 21G sing 31 n n C26 C27 21G sing 32 n n C22 C27 21G sing 33 n n C1 H1 21G sing 34 n n C3 H2 21G sing 35 n n C8 H3 21G sing 36 n n N9 H4 21G sing 37 n n C13 H5 21G sing 38 n n N17 H6 21G sing 39 n n C18 H7 21G sing 40 n n C20 H8 21G sing 41 n n C22 H9 21G sing 42 n n C23 H10 21G sing 43 n n C23 H11 21G sing 44 n n C24 H12 21G sing 45 n n C24 H13 21G sing 46 n n C25 H14 21G sing 47 n n C26 H15 21G sing 48 n n C26 H16 21G sing 49 n n C27 H17 21G sing 50 n n C27 H18 21G sing 51 n n O29 H19 21G sing 52 n n # _atom_sites.entry_id 5WL0 _atom_sites.fract_transf_matrix[1][1] 0.007022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002728 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 21G A 1 801 1 21G 21G . C 3 PEG A 1 802 1 PEG PEG . D 4 HOH A 1 901 6 HOH HOH . D 4 HOH A 2 902 37 HOH HOH . D 4 HOH A 3 903 45 HOH HOH . D 4 HOH A 4 904 28 HOH HOH . D 4 HOH A 5 905 4 HOH HOH . D 4 HOH A 6 906 48 HOH HOH . D 4 HOH A 7 907 13 HOH HOH . D 4 HOH A 8 908 27 HOH HOH . D 4 HOH A 9 909 5 HOH HOH . D 4 HOH A 10 910 9 HOH HOH . D 4 HOH A 11 911 2 HOH HOH . D 4 HOH A 12 912 33 HOH HOH . D 4 HOH A 13 913 7 HOH HOH . D 4 HOH A 14 914 17 HOH HOH . D 4 HOH A 15 915 35 HOH HOH . D 4 HOH A 16 916 1 HOH HOH . D 4 HOH A 17 917 29 HOH HOH . D 4 HOH A 18 918 38 HOH HOH . D 4 HOH A 19 919 14 HOH HOH . D 4 HOH A 20 920 26 HOH HOH . D 4 HOH A 21 921 24 HOH HOH . D 4 HOH A 22 922 16 HOH HOH . D 4 HOH A 23 923 22 HOH HOH . D 4 HOH A 24 924 3 HOH HOH . D 4 HOH A 25 925 19 HOH HOH . D 4 HOH A 26 926 21 HOH HOH . D 4 HOH A 27 927 30 HOH HOH . D 4 HOH A 28 928 49 HOH HOH . D 4 HOH A 29 929 25 HOH HOH . D 4 HOH A 30 930 12 HOH HOH . D 4 HOH A 31 931 40 HOH HOH . D 4 HOH A 32 932 20 HOH HOH . D 4 HOH A 33 933 43 HOH HOH . D 4 HOH A 34 934 41 HOH HOH . D 4 HOH A 35 935 15 HOH HOH . D 4 HOH A 36 936 31 HOH HOH . D 4 HOH A 37 937 50 HOH HOH . D 4 HOH A 38 938 34 HOH HOH . D 4 HOH A 39 939 36 HOH HOH . D 4 HOH A 40 940 46 HOH HOH . D 4 HOH A 41 941 32 HOH HOH . D 4 HOH A 42 942 39 HOH HOH . D 4 HOH A 43 943 47 HOH HOH . D 4 HOH A 44 944 10 HOH HOH . D 4 HOH A 45 945 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 21G . . . B 2 -24.636 4.855 8.794 1 46.33 ? C1 21G 801 A 1 HETATM 2 C C2 21G . . . B 2 -24.581 4.78 7.432 1 49.52 ? C2 21G 801 A 1 HETATM 3 C C3 21G . . . B 2 -25.213 3.738 6.694 1 46.36 ? C3 21G 801 A 1 HETATM 4 C C5 21G . . . B 2 -25.945 2.837 8.621 1 58.01 ? C5 21G 801 A 1 HETATM 5 C C6 21G . . . B 2 -25.339 3.86 9.425 1 51.66 ? C6 21G 801 A 1 HETATM 6 C C7 21G . . . B 2 -25.65 3.556 10.778 1 49.91 ? C7 21G 801 A 1 HETATM 7 N N4 21G . . . B 2 -25.909 2.751 7.257 1 47.89 ? N4 21G 801 A 1 HETATM 8 C C8 21G . . . B 2 -26.404 2.378 10.784 1 47.82 ? C8 21G 801 A 1 HETATM 9 N N9 21G . . . B 2 -26.59 1.926 9.486 1 55.77 ? N9 21G 801 A 1 HETATM 10 C C11 21G . . . B 2 -25.273 4.32 11.946 1 52.1 ? C11 21G 801 A 1 HETATM 11 N N12 21G . . . B 2 -25.674 3.88 13.173 1 47.27 ? N12 21G 801 A 1 HETATM 12 C C13 21G . . . B 2 -25.393 4.691 14.228 1 47.98 ? C13 21G 801 A 1 HETATM 13 C C14 21G . . . B 2 -24.74 5.92 14.067 1 59.38 ? C14 21G 801 A 1 HETATM 14 C C15 21G . . . B 2 -24.346 6.267 12.779 1 57.1 ? C15 21G 801 A 1 HETATM 15 N N16 21G . . . B 2 -24.6 5.461 11.702 1 70.59 ? N16 21G 801 A 1 HETATM 16 N N17 21G . . . B 2 -23.752 7.448 12.563 1 48.77 ? N17 21G 801 A 1 HETATM 17 C C18 21G . . . B 2 -23.3 7.846 11.262 1 37.4 ? C18 21G 801 A 1 HETATM 18 C C20 21G . . . B 2 -22.049 8.715 11.541 1 45.68 ? C20 21G 801 A 1 HETATM 19 C C22 21G . . . B 2 -21.981 9.82 10.469 1 42.44 ? C22 21G 801 A 1 HETATM 20 C C23 21G . . . B 2 -22.4 9.242 9.115 1 38.11 ? C23 21G 801 A 1 HETATM 21 C C24 21G . . . B 2 -23.89 8.843 9.117 1 33.87 ? C24 21G 801 A 1 HETATM 22 C C25 21G . . . B 2 -24.373 8.696 10.561 1 39.84 ? C25 21G 801 A 1 HETATM 23 C C26 21G . . . B 2 -24.432 10.124 11.174 1 41.62 ? C26 21G 801 A 1 HETATM 24 C C27 21G . . . B 2 -23.055 10.838 10.966 1 37.5 ? C27 21G 801 A 1 HETATM 25 C C28 21G . . . B 2 -20.816 7.839 11.663 1 53.56 ? C28 21G 801 A 1 HETATM 26 O O29 21G . . . B 2 -20.516 7.114 12.611 1 75.01 ? O29 21G 801 A 1 HETATM 27 O O30 21G . . . B 2 -19.965 7.886 10.62 1 55.6 ? O30 21G 801 A 1 HETATM 28 F F31 21G . . . B 2 -24.526 6.776 15.082 1 59.87 ? F31 21G 801 A 1 HETATM 29 F F32 21G . . . B 2 -23.916 5.722 6.761 1 43 ? F32 21G 801 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #