data_5WLB # _model_server_result.job_id qEV25wyHc1ergLynpNW0lg _model_server_result.datetime_utc '2024-10-28 02:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wlb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":202}' # _entry.id 5WLB # _exptl.entry_id 5WLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.57 _cell.angle_gamma 90 _cell.entry_id 5WLB _cell.length_a 38.145 _cell.length_b 86.843 _cell.length_c 71.038 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,N,O,P 1 1 D,E,F,L,M,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 G O2G GNP . A GNP 201 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 G O2B GNP . A GNP 201 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc4 H MG MG . A MG 202 1_555 N O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc5 H MG MG . A MG 202 1_555 N O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc6 H MG MG . A MG 202 1_555 O O HOH . B HOH 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc7 D OG SER 17 D SER 17 1_555 M MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc8 L O1G GNP . D GNP 201 1_555 M MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc9 L O1B GNP . D GNP 201 1_555 M MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc10 M MG MG . D MG 202 1_555 Q O HOH . D HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc11 M MG MG . D MG 202 1_555 Q O HOH . D HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc12 M MG MG . D MG 202 1_555 R O HOH . E HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WLB _atom_sites.fract_transf_matrix[1][1] 0.026216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006329 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GNP A 1 201 300 GNP GNP . H 5 MG A 1 202 301 MG MG . I 6 PG4 A 1 203 203 PG4 PG4 . J 7 SO4 C 1 101 101 SO4 SO4 . K 7 SO4 C 1 102 102 SO4 SO4 . L 4 GNP D 1 201 201 GNP GNP . M 5 MG D 1 202 202 MG MG . N 8 HOH A 1 401 401 HOH HOH . N 8 HOH A 2 402 402 HOH HOH . N 8 HOH A 3 403 403 HOH HOH . N 8 HOH A 4 404 406 HOH HOH . N 8 HOH A 5 405 427 HOH HOH . N 8 HOH A 6 406 405 HOH HOH . N 8 HOH A 7 407 414 HOH HOH . N 8 HOH A 8 408 413 HOH HOH . N 8 HOH A 9 409 416 HOH HOH . N 8 HOH A 10 410 410 HOH HOH . N 8 HOH A 11 411 408 HOH HOH . N 8 HOH A 12 412 412 HOH HOH . N 8 HOH A 13 413 404 HOH HOH . N 8 HOH A 14 414 409 HOH HOH . N 8 HOH A 15 415 415 HOH HOH . N 8 HOH A 16 416 426 HOH HOH . N 8 HOH A 17 417 420 HOH HOH . N 8 HOH A 18 418 417 HOH HOH . N 8 HOH A 19 419 411 HOH HOH . N 8 HOH A 20 420 407 HOH HOH . N 8 HOH A 21 421 423 HOH HOH . N 8 HOH A 22 422 419 HOH HOH . N 8 HOH A 23 423 418 HOH HOH . N 8 HOH A 24 424 431 HOH HOH . N 8 HOH A 25 425 425 HOH HOH . N 8 HOH A 26 426 432 HOH HOH . N 8 HOH A 27 427 430 HOH HOH . N 8 HOH A 28 428 421 HOH HOH . N 8 HOH A 29 429 424 HOH HOH . N 8 HOH A 30 430 428 HOH HOH . N 8 HOH A 31 431 422 HOH HOH . N 8 HOH A 32 432 433 HOH HOH . N 8 HOH A 33 433 434 HOH HOH . N 8 HOH A 34 434 438 HOH HOH . N 8 HOH A 35 435 442 HOH HOH . N 8 HOH A 36 436 441 HOH HOH . N 8 HOH A 37 437 443 HOH HOH . N 8 HOH A 38 438 435 HOH HOH . N 8 HOH A 39 439 439 HOH HOH . N 8 HOH A 40 440 447 HOH HOH . N 8 HOH A 41 441 429 HOH HOH . N 8 HOH A 42 442 436 HOH HOH . N 8 HOH A 43 443 452 HOH HOH . N 8 HOH A 44 444 440 HOH HOH . N 8 HOH A 45 445 446 HOH HOH . N 8 HOH A 46 446 451 HOH HOH . N 8 HOH A 47 447 458 HOH HOH . N 8 HOH A 48 448 454 HOH HOH . N 8 HOH A 49 449 445 HOH HOH . N 8 HOH A 50 450 448 HOH HOH . N 8 HOH A 51 451 457 HOH HOH . N 8 HOH A 52 452 455 HOH HOH . N 8 HOH A 53 453 450 HOH HOH . N 8 HOH A 54 454 437 HOH HOH . N 8 HOH A 55 455 453 HOH HOH . N 8 HOH A 56 456 444 HOH HOH . N 8 HOH A 57 457 459 HOH HOH . N 8 HOH A 58 458 456 HOH HOH . N 8 HOH A 59 459 449 HOH HOH . N 8 HOH A 60 460 460 HOH HOH . N 8 HOH A 61 461 461 HOH HOH . N 8 HOH A 62 462 462 HOH HOH . N 8 HOH A 63 463 463 HOH HOH . N 8 HOH A 64 464 464 HOH HOH . N 8 HOH A 65 465 465 HOH HOH . O 8 HOH B 1 101 101 HOH HOH . O 8 HOH B 2 102 104 HOH HOH . O 8 HOH B 3 103 105 HOH HOH . O 8 HOH B 4 104 110 HOH HOH . O 8 HOH B 5 105 106 HOH HOH . O 8 HOH B 6 106 102 HOH HOH . O 8 HOH B 7 107 107 HOH HOH . O 8 HOH B 8 108 108 HOH HOH . O 8 HOH B 9 109 111 HOH HOH . O 8 HOH B 10 110 103 HOH HOH . O 8 HOH B 11 111 114 HOH HOH . O 8 HOH B 12 112 113 HOH HOH . O 8 HOH B 13 113 115 HOH HOH . O 8 HOH B 14 114 109 HOH HOH . O 8 HOH B 15 115 112 HOH HOH . O 8 HOH B 16 116 117 HOH HOH . O 8 HOH B 17 117 116 HOH HOH . O 8 HOH B 18 118 118 HOH HOH . O 8 HOH B 19 119 119 HOH HOH . P 8 HOH C 1 201 201 HOH HOH . P 8 HOH C 2 202 202 HOH HOH . P 8 HOH C 3 203 204 HOH HOH . P 8 HOH C 4 204 207 HOH HOH . P 8 HOH C 5 205 203 HOH HOH . P 8 HOH C 6 206 208 HOH HOH . P 8 HOH C 7 207 205 HOH HOH . P 8 HOH C 8 208 206 HOH HOH . P 8 HOH C 9 209 210 HOH HOH . P 8 HOH C 10 210 209 HOH HOH . P 8 HOH C 11 211 212 HOH HOH . P 8 HOH C 12 212 211 HOH HOH . P 8 HOH C 13 213 213 HOH HOH . P 8 HOH C 14 214 215 HOH HOH . P 8 HOH C 15 215 216 HOH HOH . P 8 HOH C 16 216 217 HOH HOH . P 8 HOH C 17 217 218 HOH HOH . P 8 HOH C 18 218 214 HOH HOH . P 8 HOH C 19 219 220 HOH HOH . P 8 HOH C 20 220 219 HOH HOH . P 8 HOH C 21 221 221 HOH HOH . P 8 HOH C 22 222 222 HOH HOH . P 8 HOH C 23 223 223 HOH HOH . Q 8 HOH D 1 301 301 HOH HOH . Q 8 HOH D 2 302 302 HOH HOH . Q 8 HOH D 3 303 311 HOH HOH . Q 8 HOH D 4 304 309 HOH HOH . Q 8 HOH D 5 305 306 HOH HOH . Q 8 HOH D 6 306 305 HOH HOH . Q 8 HOH D 7 307 304 HOH HOH . Q 8 HOH D 8 308 317 HOH HOH . Q 8 HOH D 9 309 307 HOH HOH . Q 8 HOH D 10 310 303 HOH HOH . Q 8 HOH D 11 311 314 HOH HOH . Q 8 HOH D 12 312 310 HOH HOH . Q 8 HOH D 13 313 320 HOH HOH . Q 8 HOH D 14 314 308 HOH HOH . Q 8 HOH D 15 315 312 HOH HOH . Q 8 HOH D 16 316 316 HOH HOH . Q 8 HOH D 17 317 313 HOH HOH . Q 8 HOH D 18 318 322 HOH HOH . Q 8 HOH D 19 319 321 HOH HOH . Q 8 HOH D 20 320 318 HOH HOH . Q 8 HOH D 21 321 315 HOH HOH . Q 8 HOH D 22 322 328 HOH HOH . Q 8 HOH D 23 323 325 HOH HOH . Q 8 HOH D 24 324 330 HOH HOH . Q 8 HOH D 25 325 319 HOH HOH . Q 8 HOH D 26 326 329 HOH HOH . Q 8 HOH D 27 327 326 HOH HOH . Q 8 HOH D 28 328 323 HOH HOH . Q 8 HOH D 29 329 324 HOH HOH . Q 8 HOH D 30 330 333 HOH HOH . Q 8 HOH D 31 331 331 HOH HOH . Q 8 HOH D 32 332 327 HOH HOH . Q 8 HOH D 33 333 332 HOH HOH . Q 8 HOH D 34 334 335 HOH HOH . Q 8 HOH D 35 335 336 HOH HOH . Q 8 HOH D 36 336 334 HOH HOH . Q 8 HOH D 37 337 338 HOH HOH . Q 8 HOH D 38 338 339 HOH HOH . Q 8 HOH D 39 339 340 HOH HOH . Q 8 HOH D 40 340 341 HOH HOH . Q 8 HOH D 41 341 120 HOH HOH . Q 8 HOH D 42 342 342 HOH HOH . R 8 HOH E 1 101 101 HOH HOH . R 8 HOH E 2 102 102 HOH HOH . R 8 HOH E 3 103 103 HOH HOH . R 8 HOH E 4 104 105 HOH HOH . R 8 HOH E 5 105 104 HOH HOH . R 8 HOH E 6 106 106 HOH HOH . R 8 HOH E 7 107 112 HOH HOH . R 8 HOH E 8 108 111 HOH HOH . R 8 HOH E 9 109 110 HOH HOH . R 8 HOH E 10 110 108 HOH HOH . R 8 HOH E 11 111 109 HOH HOH . R 8 HOH E 12 112 107 HOH HOH . R 8 HOH E 13 113 114 HOH HOH . R 8 HOH E 14 114 113 HOH HOH . R 8 HOH E 15 115 337 HOH HOH . R 8 HOH E 16 116 115 HOH HOH . R 8 HOH E 17 117 116 HOH HOH . R 8 HOH E 18 118 117 HOH HOH . R 8 HOH E 19 119 118 HOH HOH . R 8 HOH E 20 120 119 HOH HOH . R 8 HOH E 21 121 121 HOH HOH . S 8 HOH F 1 101 101 HOH HOH . S 8 HOH F 2 102 102 HOH HOH . S 8 HOH F 3 103 103 HOH HOH . S 8 HOH F 4 104 104 HOH HOH . S 8 HOH F 5 105 105 HOH HOH . S 8 HOH F 6 106 106 HOH HOH . S 8 HOH F 7 107 107 HOH HOH . S 8 HOH F 8 108 110 HOH HOH . S 8 HOH F 9 109 109 HOH HOH . S 8 HOH F 10 110 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 5 _atom_site.Cartn_x -18.448 _atom_site.Cartn_y 7.635 _atom_site.Cartn_z -39.256 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #