data_5WLE # _model_server_result.job_id XhDTUjkyRLbgEF2gQ-YGcw _model_server_result.datetime_utc '2024-12-04 03:54:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5WLE # _exptl.entry_id 5WLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.77 _cell.angle_gamma 90 _cell.entry_id 5WLE _cell.length_a 22.972 _cell.length_b 44.223 _cell.length_c 31.308 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 3 C THR 3 1_555 B N M3L 4 C M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C M3L 4 C M3L 4 1_555 B N GLN 5 C GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A SG CYS 11 A CYS 913 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 A SG CYS 13 A CYS 915 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc3 A SG CYS 25 A CYS 927 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A SG CYS 28 A CYS 930 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc5 A ND1 HIS 33 A HIS 935 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 A SG CYS 36 A CYS 938 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 A SG CYS 56 A CYS 958 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc8 A SG CYS 59 A CYS 961 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WLE _atom_sites.fract_transf_matrix[1][1] 0.043531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.032052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1001 1 ZN ZN . D 3 ZN A 1 1002 2 ZN ZN . E 4 HOH A 1 1101 25 HOH HOH . E 4 HOH A 2 1102 73 HOH HOH . E 4 HOH A 3 1103 35 HOH HOH . E 4 HOH A 4 1104 31 HOH HOH . E 4 HOH A 5 1105 49 HOH HOH . E 4 HOH A 6 1106 72 HOH HOH . E 4 HOH A 7 1107 54 HOH HOH . E 4 HOH A 8 1108 33 HOH HOH . E 4 HOH A 9 1109 14 HOH HOH . E 4 HOH A 10 1110 17 HOH HOH . E 4 HOH A 11 1111 12 HOH HOH . E 4 HOH A 12 1112 29 HOH HOH . E 4 HOH A 13 1113 61 HOH HOH . E 4 HOH A 14 1114 53 HOH HOH . E 4 HOH A 15 1115 4 HOH HOH . E 4 HOH A 16 1116 9 HOH HOH . E 4 HOH A 17 1117 40 HOH HOH . E 4 HOH A 18 1118 39 HOH HOH . E 4 HOH A 19 1119 15 HOH HOH . E 4 HOH A 20 1120 3 HOH HOH . E 4 HOH A 21 1121 34 HOH HOH . E 4 HOH A 22 1122 87 HOH HOH . E 4 HOH A 23 1123 28 HOH HOH . E 4 HOH A 24 1124 82 HOH HOH . E 4 HOH A 25 1125 6 HOH HOH . E 4 HOH A 26 1126 5 HOH HOH . E 4 HOH A 27 1127 10 HOH HOH . E 4 HOH A 28 1128 13 HOH HOH . E 4 HOH A 29 1129 1 HOH HOH . E 4 HOH A 30 1130 16 HOH HOH . E 4 HOH A 31 1131 44 HOH HOH . E 4 HOH A 32 1132 45 HOH HOH . E 4 HOH A 33 1133 36 HOH HOH . E 4 HOH A 34 1134 22 HOH HOH . E 4 HOH A 35 1135 38 HOH HOH . E 4 HOH A 36 1136 32 HOH HOH . E 4 HOH A 37 1137 21 HOH HOH . E 4 HOH A 38 1138 67 HOH HOH . E 4 HOH A 39 1139 47 HOH HOH . E 4 HOH A 40 1140 2 HOH HOH . E 4 HOH A 41 1141 70 HOH HOH . E 4 HOH A 42 1142 68 HOH HOH . E 4 HOH A 43 1143 7 HOH HOH . E 4 HOH A 44 1144 19 HOH HOH . E 4 HOH A 45 1145 37 HOH HOH . E 4 HOH A 46 1146 20 HOH HOH . E 4 HOH A 47 1147 42 HOH HOH . E 4 HOH A 48 1148 27 HOH HOH . E 4 HOH A 49 1149 23 HOH HOH . E 4 HOH A 50 1150 30 HOH HOH . E 4 HOH A 51 1151 48 HOH HOH . E 4 HOH A 52 1152 55 HOH HOH . E 4 HOH A 53 1153 41 HOH HOH . E 4 HOH A 54 1154 52 HOH HOH . E 4 HOH A 55 1155 26 HOH HOH . E 4 HOH A 56 1156 77 HOH HOH . E 4 HOH A 57 1157 75 HOH HOH . E 4 HOH A 58 1158 18 HOH HOH . E 4 HOH A 59 1159 50 HOH HOH . E 4 HOH A 60 1160 83 HOH HOH . E 4 HOH A 61 1161 71 HOH HOH . E 4 HOH A 62 1162 60 HOH HOH . E 4 HOH A 63 1163 56 HOH HOH . E 4 HOH A 64 1164 84 HOH HOH . E 4 HOH A 65 1165 46 HOH HOH . E 4 HOH A 66 1166 66 HOH HOH . E 4 HOH A 67 1167 51 HOH HOH . E 4 HOH A 68 1168 85 HOH HOH . E 4 HOH A 69 1169 86 HOH HOH . E 4 HOH A 70 1170 64 HOH HOH . F 4 HOH C 1 101 24 HOH HOH . F 4 HOH C 2 102 57 HOH HOH . F 4 HOH C 3 103 8 HOH HOH . F 4 HOH C 4 104 58 HOH HOH . F 4 HOH C 5 105 11 HOH HOH . F 4 HOH C 6 106 43 HOH HOH . F 4 HOH C 7 107 76 HOH HOH . F 4 HOH C 8 108 81 HOH HOH . F 4 HOH C 9 109 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.448 _atom_site.Cartn_y 4.374 _atom_site.Cartn_z 33.983 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #