data_5WLQ # _model_server_result.job_id qgeQiu9-rUq-GFHc_Zkovw _model_server_result.datetime_utc '2025-08-30 23:39:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wlq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1905}' # _entry.id 5WLQ # _exptl.entry_id 5WLQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trimethylamine oxide' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WLQ _cell.length_a 141.756 _cell.length_b 141.756 _cell.length_c 87.381 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -70.878 122.764297 14.5635 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O3 _struct_conn.ptnr1_label_comp_id SO4 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SO4 _struct_conn.ptnr1_auth_seq_id 1901 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id CAD _struct_conn.ptnr2_label_comp_id TMO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id TMO _struct_conn.ptnr2_auth_seq_id 1903 _struct_conn.ptnr2_symmetry 7_565 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.373 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H9 N O' _chem_comp.formula_weight 75.11 _chem_comp.id TMO _chem_comp.mon_nstd_flag . _chem_comp.name 'trimethylamine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAC TMO sing 310 n n CAA HAA TMO sing 311 n n CAA HAAA TMO sing 312 n n CAA HAAB TMO sing 313 n n NAC CAD TMO sing 314 n n NAC CAB TMO sing 315 n n NAC OAE TMO sing 316 n n CAD HAD TMO sing 317 n n CAD HADA TMO sing 318 n n CAD HADB TMO sing 319 n n CAB HAB TMO sing 320 n n CAB HABA TMO sing 321 n n CAB HABB TMO sing 322 n n # _atom_sites.entry_id 5WLQ _atom_sites.fract_transf_matrix[1][1] 0.007054 _atom_sites.fract_transf_matrix[1][2] 0.004073 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1901 1 SO4 SO4 . C 3 TMO A 1 1902 1 TMO TMO . D 3 TMO A 1 1903 2 TMO TMO . E 3 TMO A 1 1904 3 TMO TMO . F 3 TMO A 1 1905 4 TMO TMO . G 4 HOH A 1 2001 12 HOH HOH . G 4 HOH A 2 2002 11 HOH HOH . G 4 HOH A 3 2003 2 HOH HOH . G 4 HOH A 4 2004 6 HOH HOH . G 4 HOH A 5 2005 3 HOH HOH . G 4 HOH A 6 2006 5 HOH HOH . G 4 HOH A 7 2007 4 HOH HOH . G 4 HOH A 8 2008 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA TMO . . . F 3 -16.18 73.351 -4.288 1 107.92 ? CAA TMO 1905 A 1 HETATM 2 N NAC TMO . . . F 3 -15.828 74.722 -4.611 1 113.25 ? NAC TMO 1905 A 1 HETATM 3 C CAD TMO . . . F 3 -14.408 74.808 -4.914 1 109.82 ? CAD TMO 1905 A 1 HETATM 4 C CAB TMO . . . F 3 -16.595 75.163 -5.762 1 114.93 ? CAB TMO 1905 A 1 HETATM 5 O OAE TMO . . . F 3 -16.127 75.545 -3.517 1 115.87 ? OAE TMO 1905 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 599 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #