data_5WLY # _model_server_result.job_id Obw8v8fzQcfMtQUFj5j6XQ _model_server_result.datetime_utc '2024-11-05 01:14:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5WLY # _exptl.entry_id 5WLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WLY _cell.length_a 57.012 _cell.length_b 62.064 _cell.length_c 66.047 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (y,z,x)' _symmetry.space_group_name_H-M 'P 21 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 57.012 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 A OD2 ASP 41 A ASP 41 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 A OD1 ASN 79 A ASN 79 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc6 A NE2 HIS 114 A HIS 114 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 A ND1 HIS 195 A HIS 195 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 A NE2 HIS 197 A HIS 197 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc9 B MN MN . A MN 301 1_555 G O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc10 C MN MN . A MN 302 1_555 G O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5WLY _atom_sites.fract_transf_matrix[1][1] 0.01754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 2 MN MN . C 2 MN A 1 302 1 MN MN . D 3 CL A 1 303 3 CL CL . E 4 FMT A 1 304 1 FMT FMT . F 5 EDO A 1 305 1 EDO EGL . G 6 HOH A 1 401 98 HOH HOH . G 6 HOH A 2 402 132 HOH HOH . G 6 HOH A 3 403 112 HOH HOH . G 6 HOH A 4 404 39 HOH HOH . G 6 HOH A 5 405 41 HOH HOH . G 6 HOH A 6 406 70 HOH HOH . G 6 HOH A 7 407 120 HOH HOH . G 6 HOH A 8 408 135 HOH HOH . G 6 HOH A 9 409 46 HOH HOH . G 6 HOH A 10 410 66 HOH HOH . G 6 HOH A 11 411 74 HOH HOH . G 6 HOH A 12 412 40 HOH HOH . G 6 HOH A 13 413 51 HOH HOH . G 6 HOH A 14 414 67 HOH HOH . G 6 HOH A 15 415 33 HOH HOH . G 6 HOH A 16 416 13 HOH HOH . G 6 HOH A 17 417 16 HOH HOH . G 6 HOH A 18 418 100 HOH HOH . G 6 HOH A 19 419 2 HOH HOH . G 6 HOH A 20 420 89 HOH HOH . G 6 HOH A 21 421 21 HOH HOH . G 6 HOH A 22 422 26 HOH HOH . G 6 HOH A 23 423 151 HOH HOH . G 6 HOH A 24 424 96 HOH HOH . G 6 HOH A 25 425 15 HOH HOH . G 6 HOH A 26 426 62 HOH HOH . G 6 HOH A 27 427 88 HOH HOH . G 6 HOH A 28 428 17 HOH HOH . G 6 HOH A 29 429 11 HOH HOH . G 6 HOH A 30 430 65 HOH HOH . G 6 HOH A 31 431 127 HOH HOH . G 6 HOH A 32 432 43 HOH HOH . G 6 HOH A 33 433 3 HOH HOH . G 6 HOH A 34 434 4 HOH HOH . G 6 HOH A 35 435 9 HOH HOH . G 6 HOH A 36 436 42 HOH HOH . G 6 HOH A 37 437 20 HOH HOH . G 6 HOH A 38 438 134 HOH HOH . G 6 HOH A 39 439 102 HOH HOH . G 6 HOH A 40 440 10 HOH HOH . G 6 HOH A 41 441 116 HOH HOH . G 6 HOH A 42 442 8 HOH HOH . G 6 HOH A 43 443 64 HOH HOH . G 6 HOH A 44 444 117 HOH HOH . G 6 HOH A 45 445 6 HOH HOH . G 6 HOH A 46 446 80 HOH HOH . G 6 HOH A 47 447 34 HOH HOH . G 6 HOH A 48 448 54 HOH HOH . G 6 HOH A 49 449 5 HOH HOH . G 6 HOH A 50 450 38 HOH HOH . G 6 HOH A 51 451 12 HOH HOH . G 6 HOH A 52 452 23 HOH HOH . G 6 HOH A 53 453 1 HOH HOH . G 6 HOH A 54 454 27 HOH HOH . G 6 HOH A 55 455 35 HOH HOH . G 6 HOH A 56 456 126 HOH HOH . G 6 HOH A 57 457 37 HOH HOH . G 6 HOH A 58 458 45 HOH HOH . G 6 HOH A 59 459 31 HOH HOH . G 6 HOH A 60 460 18 HOH HOH . G 6 HOH A 61 461 84 HOH HOH . G 6 HOH A 62 462 19 HOH HOH . G 6 HOH A 63 463 53 HOH HOH . G 6 HOH A 64 464 146 HOH HOH . G 6 HOH A 65 465 118 HOH HOH . G 6 HOH A 66 466 141 HOH HOH . G 6 HOH A 67 467 109 HOH HOH . G 6 HOH A 68 468 56 HOH HOH . G 6 HOH A 69 469 82 HOH HOH . G 6 HOH A 70 470 60 HOH HOH . G 6 HOH A 71 471 50 HOH HOH . G 6 HOH A 72 472 142 HOH HOH . G 6 HOH A 73 473 7 HOH HOH . G 6 HOH A 74 474 78 HOH HOH . G 6 HOH A 75 475 28 HOH HOH . G 6 HOH A 76 476 55 HOH HOH . G 6 HOH A 77 477 103 HOH HOH . G 6 HOH A 78 478 32 HOH HOH . G 6 HOH A 79 479 44 HOH HOH . G 6 HOH A 80 480 68 HOH HOH . G 6 HOH A 81 481 14 HOH HOH . G 6 HOH A 82 482 63 HOH HOH . G 6 HOH A 83 483 69 HOH HOH . G 6 HOH A 84 484 75 HOH HOH . G 6 HOH A 85 485 85 HOH HOH . G 6 HOH A 86 486 79 HOH HOH . G 6 HOH A 87 487 47 HOH HOH . G 6 HOH A 88 488 22 HOH HOH . G 6 HOH A 89 489 131 HOH HOH . G 6 HOH A 90 490 86 HOH HOH . G 6 HOH A 91 491 147 HOH HOH . G 6 HOH A 92 492 113 HOH HOH . G 6 HOH A 93 493 97 HOH HOH . G 6 HOH A 94 494 83 HOH HOH . G 6 HOH A 95 495 139 HOH HOH . G 6 HOH A 96 496 128 HOH HOH . G 6 HOH A 97 497 49 HOH HOH . G 6 HOH A 98 498 101 HOH HOH . G 6 HOH A 99 499 133 HOH HOH . G 6 HOH A 100 500 94 HOH HOH . G 6 HOH A 101 501 99 HOH HOH . G 6 HOH A 102 502 52 HOH HOH . G 6 HOH A 103 503 121 HOH HOH . G 6 HOH A 104 504 73 HOH HOH . G 6 HOH A 105 505 58 HOH HOH . G 6 HOH A 106 506 115 HOH HOH . G 6 HOH A 107 507 71 HOH HOH . G 6 HOH A 108 508 59 HOH HOH . G 6 HOH A 109 509 123 HOH HOH . G 6 HOH A 110 510 125 HOH HOH . G 6 HOH A 111 511 105 HOH HOH . G 6 HOH A 112 512 76 HOH HOH . G 6 HOH A 113 513 148 HOH HOH . G 6 HOH A 114 514 36 HOH HOH . G 6 HOH A 115 515 145 HOH HOH . G 6 HOH A 116 516 143 HOH HOH . G 6 HOH A 117 517 104 HOH HOH . G 6 HOH A 118 518 129 HOH HOH . G 6 HOH A 119 519 92 HOH HOH . G 6 HOH A 120 520 24 HOH HOH . G 6 HOH A 121 521 107 HOH HOH . G 6 HOH A 122 522 110 HOH HOH . G 6 HOH A 123 523 111 HOH HOH . G 6 HOH A 124 524 61 HOH HOH . G 6 HOH A 125 525 137 HOH HOH . G 6 HOH A 126 526 108 HOH HOH . G 6 HOH A 127 527 150 HOH HOH . G 6 HOH A 128 528 124 HOH HOH . G 6 HOH A 129 529 57 HOH HOH . G 6 HOH A 130 530 91 HOH HOH . G 6 HOH A 131 531 138 HOH HOH . G 6 HOH A 132 532 149 HOH HOH . G 6 HOH A 133 533 152 HOH HOH . G 6 HOH A 134 534 87 HOH HOH . G 6 HOH A 135 535 72 HOH HOH . G 6 HOH A 136 536 25 HOH HOH . G 6 HOH A 137 537 153 HOH HOH . G 6 HOH A 138 538 29 HOH HOH . G 6 HOH A 139 539 136 HOH HOH . G 6 HOH A 140 540 130 HOH HOH . G 6 HOH A 141 541 95 HOH HOH . G 6 HOH A 142 542 77 HOH HOH . G 6 HOH A 143 543 90 HOH HOH . G 6 HOH A 144 544 114 HOH HOH . G 6 HOH A 145 545 30 HOH HOH . G 6 HOH A 146 546 140 HOH HOH . G 6 HOH A 147 547 122 HOH HOH . G 6 HOH A 148 548 93 HOH HOH . G 6 HOH A 149 549 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 26.496 8.401 -1.441 1 52.68 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 5 25.802 9.607 -1.609 1 52.58 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 5 26.335 7.551 -2.698 1 53.76 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 5 26.774 6.248 -2.423 1 55.61 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #