data_5WMA # _model_server_result.job_id gfS5nbV6VqpTyijPMlw4Ng _model_server_result.datetime_utc '2024-10-19 03:55:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5WMA # _exptl.entry_id 5WMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WMA _cell.length_a 37.226 _cell.length_b 44.47 _cell.length_c 78.311 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 112 n n C1 C2 EDO sing 113 n n C1 H11 EDO sing 114 n n C1 H12 EDO sing 115 n n O1 HO1 EDO sing 116 n n C2 O2 EDO sing 117 n n C2 H21 EDO sing 118 n n C2 H22 EDO sing 119 n n O2 HO2 EDO sing 120 n n # _atom_sites.entry_id 5WMA _atom_sites.fract_transf_matrix[1][1] 0.026863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 3 6JC A 1 202 1 6JC 981 . D 4 HOH A 1 301 164 HOH HOH . D 4 HOH A 2 302 74 HOH HOH . D 4 HOH A 3 303 117 HOH HOH . D 4 HOH A 4 304 147 HOH HOH . D 4 HOH A 5 305 109 HOH HOH . D 4 HOH A 6 306 141 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 122 HOH HOH . D 4 HOH A 9 309 123 HOH HOH . D 4 HOH A 10 310 93 HOH HOH . D 4 HOH A 11 311 120 HOH HOH . D 4 HOH A 12 312 75 HOH HOH . D 4 HOH A 13 313 87 HOH HOH . D 4 HOH A 14 314 70 HOH HOH . D 4 HOH A 15 315 45 HOH HOH . D 4 HOH A 16 316 76 HOH HOH . D 4 HOH A 17 317 34 HOH HOH . D 4 HOH A 18 318 31 HOH HOH . D 4 HOH A 19 319 19 HOH HOH . D 4 HOH A 20 320 144 HOH HOH . D 4 HOH A 21 321 79 HOH HOH . D 4 HOH A 22 322 61 HOH HOH . D 4 HOH A 23 323 105 HOH HOH . D 4 HOH A 24 324 28 HOH HOH . D 4 HOH A 25 325 146 HOH HOH . D 4 HOH A 26 326 24 HOH HOH . D 4 HOH A 27 327 137 HOH HOH . D 4 HOH A 28 328 11 HOH HOH . D 4 HOH A 29 329 64 HOH HOH . D 4 HOH A 30 330 72 HOH HOH . D 4 HOH A 31 331 26 HOH HOH . D 4 HOH A 32 332 16 HOH HOH . D 4 HOH A 33 333 68 HOH HOH . D 4 HOH A 34 334 30 HOH HOH . D 4 HOH A 35 335 181 HOH HOH . D 4 HOH A 36 336 134 HOH HOH . D 4 HOH A 37 337 104 HOH HOH . D 4 HOH A 38 338 48 HOH HOH . D 4 HOH A 39 339 53 HOH HOH . D 4 HOH A 40 340 77 HOH HOH . D 4 HOH A 41 341 25 HOH HOH . D 4 HOH A 42 342 12 HOH HOH . D 4 HOH A 43 343 82 HOH HOH . D 4 HOH A 44 344 37 HOH HOH . D 4 HOH A 45 345 63 HOH HOH . D 4 HOH A 46 346 65 HOH HOH . D 4 HOH A 47 347 69 HOH HOH . D 4 HOH A 48 348 51 HOH HOH . D 4 HOH A 49 349 112 HOH HOH . D 4 HOH A 50 350 22 HOH HOH . D 4 HOH A 51 351 10 HOH HOH . D 4 HOH A 52 352 116 HOH HOH . D 4 HOH A 53 353 96 HOH HOH . D 4 HOH A 54 354 169 HOH HOH . D 4 HOH A 55 355 103 HOH HOH . D 4 HOH A 56 356 38 HOH HOH . D 4 HOH A 57 357 83 HOH HOH . D 4 HOH A 58 358 1 HOH HOH . D 4 HOH A 59 359 145 HOH HOH . D 4 HOH A 60 360 94 HOH HOH . D 4 HOH A 61 361 39 HOH HOH . D 4 HOH A 62 362 84 HOH HOH . D 4 HOH A 63 363 102 HOH HOH . D 4 HOH A 64 364 13 HOH HOH . D 4 HOH A 65 365 3 HOH HOH . D 4 HOH A 66 366 33 HOH HOH . D 4 HOH A 67 367 41 HOH HOH . D 4 HOH A 68 368 32 HOH HOH . D 4 HOH A 69 369 101 HOH HOH . D 4 HOH A 70 370 121 HOH HOH . D 4 HOH A 71 371 59 HOH HOH . D 4 HOH A 72 372 50 HOH HOH . D 4 HOH A 73 373 21 HOH HOH . D 4 HOH A 74 374 99 HOH HOH . D 4 HOH A 75 375 67 HOH HOH . D 4 HOH A 76 376 9 HOH HOH . D 4 HOH A 77 377 35 HOH HOH . D 4 HOH A 78 378 2 HOH HOH . D 4 HOH A 79 379 174 HOH HOH . D 4 HOH A 80 380 177 HOH HOH . D 4 HOH A 81 381 60 HOH HOH . D 4 HOH A 82 382 62 HOH HOH . D 4 HOH A 83 383 110 HOH HOH . D 4 HOH A 84 384 161 HOH HOH . D 4 HOH A 85 385 151 HOH HOH . D 4 HOH A 86 386 136 HOH HOH . D 4 HOH A 87 387 14 HOH HOH . D 4 HOH A 88 388 49 HOH HOH . D 4 HOH A 89 389 42 HOH HOH . D 4 HOH A 90 390 115 HOH HOH . D 4 HOH A 91 391 17 HOH HOH . D 4 HOH A 92 392 52 HOH HOH . D 4 HOH A 93 393 43 HOH HOH . D 4 HOH A 94 394 98 HOH HOH . D 4 HOH A 95 395 114 HOH HOH . D 4 HOH A 96 396 88 HOH HOH . D 4 HOH A 97 397 126 HOH HOH . D 4 HOH A 98 398 95 HOH HOH . D 4 HOH A 99 399 73 HOH HOH . D 4 HOH A 100 400 143 HOH HOH . D 4 HOH A 101 401 66 HOH HOH . D 4 HOH A 102 402 86 HOH HOH . D 4 HOH A 103 403 36 HOH HOH . D 4 HOH A 104 404 155 HOH HOH . D 4 HOH A 105 405 91 HOH HOH . D 4 HOH A 106 406 171 HOH HOH . D 4 HOH A 107 407 20 HOH HOH . D 4 HOH A 108 408 168 HOH HOH . D 4 HOH A 109 409 92 HOH HOH . D 4 HOH A 110 410 90 HOH HOH . D 4 HOH A 111 411 167 HOH HOH . D 4 HOH A 112 412 150 HOH HOH . D 4 HOH A 113 413 140 HOH HOH . D 4 HOH A 114 414 130 HOH HOH . D 4 HOH A 115 415 152 HOH HOH . D 4 HOH A 116 416 81 HOH HOH . D 4 HOH A 117 417 78 HOH HOH . D 4 HOH A 118 418 15 HOH HOH . D 4 HOH A 119 419 6 HOH HOH . D 4 HOH A 120 420 180 HOH HOH . D 4 HOH A 121 421 133 HOH HOH . D 4 HOH A 122 422 153 HOH HOH . D 4 HOH A 123 423 5 HOH HOH . D 4 HOH A 124 424 18 HOH HOH . D 4 HOH A 125 425 54 HOH HOH . D 4 HOH A 126 426 27 HOH HOH . D 4 HOH A 127 427 108 HOH HOH . D 4 HOH A 128 428 4 HOH HOH . D 4 HOH A 129 429 166 HOH HOH . D 4 HOH A 130 430 47 HOH HOH . D 4 HOH A 131 431 165 HOH HOH . D 4 HOH A 132 432 40 HOH HOH . D 4 HOH A 133 433 85 HOH HOH . D 4 HOH A 134 434 178 HOH HOH . D 4 HOH A 135 435 158 HOH HOH . D 4 HOH A 136 436 138 HOH HOH . D 4 HOH A 137 437 124 HOH HOH . D 4 HOH A 138 438 125 HOH HOH . D 4 HOH A 139 439 173 HOH HOH . D 4 HOH A 140 440 127 HOH HOH . D 4 HOH A 141 441 128 HOH HOH . D 4 HOH A 142 442 172 HOH HOH . D 4 HOH A 143 443 113 HOH HOH . D 4 HOH A 144 444 46 HOH HOH . D 4 HOH A 145 445 159 HOH HOH . D 4 HOH A 146 446 175 HOH HOH . D 4 HOH A 147 447 58 HOH HOH . D 4 HOH A 148 448 135 HOH HOH . D 4 HOH A 149 449 162 HOH HOH . D 4 HOH A 150 450 156 HOH HOH . D 4 HOH A 151 451 57 HOH HOH . D 4 HOH A 152 452 129 HOH HOH . D 4 HOH A 153 453 176 HOH HOH . D 4 HOH A 154 454 23 HOH HOH . D 4 HOH A 155 455 132 HOH HOH . D 4 HOH A 156 456 131 HOH HOH . D 4 HOH A 157 457 119 HOH HOH . D 4 HOH A 158 458 80 HOH HOH . D 4 HOH A 159 459 71 HOH HOH . D 4 HOH A 160 460 56 HOH HOH . D 4 HOH A 161 461 89 HOH HOH . D 4 HOH A 162 462 107 HOH HOH . D 4 HOH A 163 463 142 HOH HOH . D 4 HOH A 164 464 44 HOH HOH . D 4 HOH A 165 465 148 HOH HOH . D 4 HOH A 166 466 160 HOH HOH . D 4 HOH A 167 467 55 HOH HOH . D 4 HOH A 168 468 139 HOH HOH . D 4 HOH A 169 469 154 HOH HOH . D 4 HOH A 170 470 163 HOH HOH . D 4 HOH A 171 471 149 HOH HOH . D 4 HOH A 172 472 111 HOH HOH . D 4 HOH A 173 473 100 HOH HOH . D 4 HOH A 174 474 106 HOH HOH . D 4 HOH A 175 475 97 HOH HOH . D 4 HOH A 176 476 157 HOH HOH . D 4 HOH A 177 477 170 HOH HOH . D 4 HOH A 178 478 179 HOH HOH . D 4 HOH A 179 479 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -23.509 -1.652 -6.891 1 18.65 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . B 2 -22.295 -2.36 -7.154 1 14.68 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . B 2 -24.42 -2.516 -6.027 1 20.32 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . B 2 -24.875 -3.642 -6.781 1 19.45 ? O2 EDO 201 A 1 HETATM 5 H H11 EDO . . . B 2 -23.287 -0.716 -6.374 1 22.28 ? H11 EDO 201 A 1 HETATM 6 H H12 EDO . . . B 2 -24.009 -1.413 -7.832 1 22.28 ? H12 EDO 201 A 1 HETATM 7 H HO1 EDO . . . B 2 -21.715 -1.814 -7.702 1 17.52 ? HO1 EDO 201 A 1 HETATM 8 H H21 EDO . . . B 2 -25.276 -1.927 -5.691 1 24.29 ? H21 EDO 201 A 1 HETATM 9 H H22 EDO . . . B 2 -23.875 -2.859 -5.145 1 24.29 ? H22 EDO 201 A 1 HETATM 10 H HO2 EDO . . . B 2 -25.452 -4.187 -6.229 1 23.25 ? HO2 EDO 201 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #