data_5WMD # _model_server_result.job_id EamTCwd_rT_nfA8yPJ7wsg _model_server_result.datetime_utc '2024-10-19 03:51:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5WMD # _exptl.entry_id 5WMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.992 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(4-hydroxyphenyl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WMD _cell.length_a 36.865 _cell.length_b 44.567 _cell.length_c 77.846 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H22 Cl N5 O2 S' _chem_comp.formula_weight 491.992 _chem_comp.id 6JE _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(4-hydroxyphenyl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 C37 6JE sing 1 n n C35 C37 6JE doub 2 n y C35 C33 6JE sing 3 n y C37 C38 6JE sing 4 n y C33 C42 6JE doub 5 n y C38 C40 6JE doub 6 n y CL C24 6JE sing 7 n n C22 C24 6JE doub 8 n y C22 C20 6JE sing 9 n y C42 C40 6JE sing 10 n y C42 N43 6JE sing 11 n n C24 C25 6JE sing 12 n y C20 C29 6JE doub 13 n y N43 C45 6JE sing 14 n n C25 C27 6JE doub 15 n y C45 O30 6JE doub 16 n n C45 C46 6JE sing 17 n n C29 C27 6JE sing 18 n y C29 C52 6JE sing 19 n n N51 C52 6JE doub 20 n n N51 C49 6JE sing 21 n n C46 C49 6JE sing 22 n n C52 C53 6JE sing 23 n n C49 C56 6JE sing 24 n n C8 C18 6JE sing 25 n n C53 C18 6JE sing 26 n y C53 C54 6JE doub 27 n y C56 N5 6JE doub 28 n y C56 N55 6JE sing 29 n y C18 C17 6JE doub 30 n y N5 N6 6JE sing 31 n y N55 C54 6JE sing 32 n n N55 C7 6JE sing 33 n y C54 S16 6JE sing 34 n y N6 C7 6JE doub 35 n y C17 C12 6JE sing 36 n n C17 S16 6JE sing 37 n y C7 C1 6JE sing 38 n n C1 H13 6JE sing 39 n n C1 H11 6JE sing 40 n n C1 H12 6JE sing 41 n n C8 H82 6JE sing 42 n n C8 H83 6JE sing 43 n n C8 H81 6JE sing 44 n n C12 H122 6JE sing 45 n n C12 H123 6JE sing 46 n n C12 H121 6JE sing 47 n n C20 H20 6JE sing 48 n n C22 H22 6JE sing 49 n n C25 H25 6JE sing 50 n n C27 H27 6JE sing 51 n n O31 H31 6JE sing 52 n n C33 H33 6JE sing 53 n n C35 H35 6JE sing 54 n n C38 H38 6JE sing 55 n n C40 H40 6JE sing 56 n n N43 H43 6JE sing 57 n n C46 H461 6JE sing 58 n n C46 H462 6JE sing 59 n n C49 H49 6JE sing 60 n n # _atom_sites.entry_id 5WMD _atom_sites.fract_transf_matrix[1][1] 0.027126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6JE A 1 201 201 6JE 6JE . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . C 3 HOH A 51 351 351 HOH HOH . C 3 HOH A 52 352 352 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . C 3 HOH A 57 357 357 HOH HOH . C 3 HOH A 58 358 358 HOH HOH . C 3 HOH A 59 359 359 HOH HOH . C 3 HOH A 60 360 360 HOH HOH . C 3 HOH A 61 361 361 HOH HOH . C 3 HOH A 62 362 362 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 364 HOH HOH . C 3 HOH A 65 365 365 HOH HOH . C 3 HOH A 66 366 366 HOH HOH . C 3 HOH A 67 367 367 HOH HOH . C 3 HOH A 68 368 368 HOH HOH . C 3 HOH A 69 369 369 HOH HOH . C 3 HOH A 70 370 370 HOH HOH . C 3 HOH A 71 371 371 HOH HOH . C 3 HOH A 72 372 372 HOH HOH . C 3 HOH A 73 373 373 HOH HOH . C 3 HOH A 74 374 374 HOH HOH . C 3 HOH A 75 375 375 HOH HOH . C 3 HOH A 76 376 376 HOH HOH . C 3 HOH A 77 377 377 HOH HOH . C 3 HOH A 78 378 378 HOH HOH . C 3 HOH A 79 379 379 HOH HOH . C 3 HOH A 80 380 380 HOH HOH . C 3 HOH A 81 381 381 HOH HOH . C 3 HOH A 82 382 382 HOH HOH . C 3 HOH A 83 383 383 HOH HOH . C 3 HOH A 84 384 384 HOH HOH . C 3 HOH A 85 385 385 HOH HOH . C 3 HOH A 86 386 386 HOH HOH . C 3 HOH A 87 387 387 HOH HOH . C 3 HOH A 88 388 388 HOH HOH . C 3 HOH A 89 389 389 HOH HOH . C 3 HOH A 90 390 390 HOH HOH . C 3 HOH A 91 391 391 HOH HOH . C 3 HOH A 92 392 392 HOH HOH . C 3 HOH A 93 393 393 HOH HOH . C 3 HOH A 94 394 394 HOH HOH . C 3 HOH A 95 395 395 HOH HOH . C 3 HOH A 96 396 396 HOH HOH . C 3 HOH A 97 397 397 HOH HOH . C 3 HOH A 98 398 398 HOH HOH . C 3 HOH A 99 399 399 HOH HOH . C 3 HOH A 100 400 400 HOH HOH . C 3 HOH A 101 401 401 HOH HOH . C 3 HOH A 102 402 402 HOH HOH . C 3 HOH A 103 403 403 HOH HOH . C 3 HOH A 104 404 404 HOH HOH . C 3 HOH A 105 405 405 HOH HOH . C 3 HOH A 106 406 406 HOH HOH . C 3 HOH A 107 407 407 HOH HOH . C 3 HOH A 108 408 408 HOH HOH . C 3 HOH A 109 409 409 HOH HOH . C 3 HOH A 110 410 410 HOH HOH . C 3 HOH A 111 411 411 HOH HOH . C 3 HOH A 112 412 412 HOH HOH . C 3 HOH A 113 413 413 HOH HOH . C 3 HOH A 114 414 414 HOH HOH . C 3 HOH A 115 415 415 HOH HOH . C 3 HOH A 116 416 416 HOH HOH . C 3 HOH A 117 417 417 HOH HOH . C 3 HOH A 118 418 418 HOH HOH . C 3 HOH A 119 419 419 HOH HOH . C 3 HOH A 120 420 420 HOH HOH . C 3 HOH A 121 421 421 HOH HOH . C 3 HOH A 122 422 422 HOH HOH . C 3 HOH A 123 423 423 HOH HOH . C 3 HOH A 124 424 424 HOH HOH . C 3 HOH A 125 425 425 HOH HOH . C 3 HOH A 126 426 426 HOH HOH . C 3 HOH A 127 427 427 HOH HOH . C 3 HOH A 128 428 428 HOH HOH . C 3 HOH A 129 429 429 HOH HOH . C 3 HOH A 130 430 430 HOH HOH . C 3 HOH A 131 431 431 HOH HOH . C 3 HOH A 132 432 432 HOH HOH . C 3 HOH A 133 433 433 HOH HOH . C 3 HOH A 134 434 434 HOH HOH . C 3 HOH A 135 435 435 HOH HOH . C 3 HOH A 136 436 436 HOH HOH . C 3 HOH A 137 437 437 HOH HOH . C 3 HOH A 138 438 438 HOH HOH . C 3 HOH A 139 439 439 HOH HOH . C 3 HOH A 140 440 440 HOH HOH . C 3 HOH A 141 441 441 HOH HOH . C 3 HOH A 142 442 442 HOH HOH . C 3 HOH A 143 443 443 HOH HOH . C 3 HOH A 144 444 444 HOH HOH . C 3 HOH A 145 445 445 HOH HOH . C 3 HOH A 146 446 446 HOH HOH . C 3 HOH A 147 447 447 HOH HOH . C 3 HOH A 148 448 448 HOH HOH . C 3 HOH A 149 449 449 HOH HOH . C 3 HOH A 150 450 450 HOH HOH . C 3 HOH A 151 451 451 HOH HOH . C 3 HOH A 152 452 452 HOH HOH . C 3 HOH A 153 453 453 HOH HOH . C 3 HOH A 154 454 454 HOH HOH . C 3 HOH A 155 455 455 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6JE . . . B 2 11.395 -3.422 1.595 1 11.03 ? C1 6JE 201 A 1 HETATM 2 N N5 6JE . . . B 2 13.584 -5.121 -0.757 1 11.01 ? N5 6JE 201 A 1 HETATM 3 N N6 6JE . . . B 2 13.318 -4.189 0.212 1 10.85 ? N6 6JE 201 A 1 HETATM 4 C C7 6JE . . . B 2 12.061 -4.278 0.572 1 10.22 ? C7 6JE 201 A 1 HETATM 5 C C8 6JE . . . B 2 7.242 -7.522 -1.77 1 13.03 ? C8 6JE 201 A 1 HETATM 6 C C12 6JE . . . B 2 6.779 -7.209 1.276 1 11.57 ? C12 6JE 201 A 1 HETATM 7 S S16 6JE . . . B 2 9.308 -6.048 1.372 1 11.13 ? S16 6JE 201 A 1 HETATM 8 C C17 6JE . . . B 2 7.996 -6.766 0.525 1 11.09 ? C17 6JE 201 A 1 HETATM 9 C C18 6JE . . . B 2 8.212 -6.877 -0.834 1 11.59 ? C18 6JE 201 A 1 HETATM 10 CL CL 6JE . . . B 2 6.442 -3.855 -6.81 1 15.4 ? CL 6JE 201 A 1 HETATM 11 C C20 6JE . . . B 2 9.418 -5.788 -4.964 1 12.89 ? C20 6JE 201 A 1 HETATM 12 C C22 6JE . . . B 2 8.603 -5.254 -5.954 1 13.4 ? C22 6JE 201 A 1 HETATM 13 C C24 6JE . . . B 2 7.466 -4.543 -5.596 1 13.69 ? C24 6JE 201 A 1 HETATM 14 C C25 6JE . . . B 2 7.137 -4.357 -4.255 1 13.27 ? C25 6JE 201 A 1 HETATM 15 C C27 6JE . . . B 2 7.943 -4.898 -3.268 1 11.56 ? C27 6JE 201 A 1 HETATM 16 C C29 6JE . . . B 2 9.084 -5.626 -3.616 1 11.9 ? C29 6JE 201 A 1 HETATM 17 O O30 6JE . . . B 2 12.11 -9.316 -3.311 1 17.74 ? O30 6JE 201 A 1 HETATM 18 O O31 6JE . . . B 2 12.244 -12.193 -8.881 1 30.67 ? O31 6JE 201 A 1 HETATM 19 C C33 6JE . . . B 2 12.342 -9.069 -6.993 1 27.65 ? C33 6JE 201 A 1 HETATM 20 C C35 6JE . . . B 2 12.042 -10.019 -7.988 1 28.92 ? C35 6JE 201 A 1 HETATM 21 C C37 6JE . . . B 2 12.565 -11.307 -7.895 1 28.29 ? C37 6JE 201 A 1 HETATM 22 C C38 6JE . . . B 2 13.401 -11.668 -6.848 1 28.51 ? C38 6JE 201 A 1 HETATM 23 C C40 6JE . . . B 2 13.702 -10.711 -5.868 1 25.43 ? C40 6JE 201 A 1 HETATM 24 C C42 6JE . . . B 2 13.182 -9.422 -5.924 1 24.79 ? C42 6JE 201 A 1 HETATM 25 N N43 6JE . . . B 2 13.463 -8.471 -4.914 1 22.52 ? N43 6JE 201 A 1 HETATM 26 C C45 6JE . . . B 2 12.918 -8.497 -3.656 1 15.59 ? C45 6JE 201 A 1 HETATM 27 C C46 6JE . . . B 2 13.387 -7.377 -2.713 1 12.29 ? C46 6JE 201 A 1 HETATM 28 C C49 6JE . . . B 2 12.172 -6.89 -1.919 1 10.7 ? C49 6JE 201 A 1 HETATM 29 N N51 6JE . . . B 2 11.214 -6.334 -2.897 1 10.65 ? N51 6JE 201 A 1 HETATM 30 C C52 6JE . . . B 2 9.978 -6.177 -2.571 1 10.87 ? C52 6JE 201 A 1 HETATM 31 C C53 6JE . . . B 2 9.489 -6.328 -1.19 1 11.11 ? C53 6JE 201 A 1 HETATM 32 C C54 6JE . . . B 2 10.159 -5.841 -0.092 1 10.57 ? C54 6JE 201 A 1 HETATM 33 N N55 6JE . . . B 2 11.468 -5.309 -0.124 1 10.64 ? N55 6JE 201 A 1 HETATM 34 C C56 6JE . . . B 2 12.47 -5.793 -0.945 1 10.77 ? C56 6JE 201 A 1 HETATM 35 H H13 6JE . . . B 2 10.573 -2.845 1.162 1 13.22 ? H13 6JE 201 A 1 HETATM 36 H H11 6JE . . . B 2 12.112 -2.702 2.004 1 13.22 ? H11 6JE 201 A 1 HETATM 37 H H12 6JE . . . B 2 11.027 -4.023 2.43 1 13.22 ? H12 6JE 201 A 1 HETATM 38 H H82 6JE . . . B 2 7.759 -8.092 -2.548 1 15.61 ? H82 6JE 201 A 1 HETATM 39 H H83 6JE . . . B 2 6.608 -6.767 -2.243 1 15.61 ? H83 6JE 201 A 1 HETATM 40 H H81 6JE . . . B 2 6.593 -8.228 -1.241 1 15.61 ? H81 6JE 201 A 1 HETATM 41 H H122 6JE . . . B 2 6.014 -7.561 0.576 1 13.86 ? H122 6JE 201 A 1 HETATM 42 H H123 6JE . . . B 2 6.362 -6.379 1.855 1 13.86 ? H123 6JE 201 A 1 HETATM 43 H H121 6JE . . . B 2 6.997 -8.02 1.978 1 13.86 ? H121 6JE 201 A 1 HETATM 44 H H20 6JE . . . B 2 10.304 -6.344 -5.256 1 15.46 ? H20 6JE 201 A 1 HETATM 45 H H22 6JE . . . B 2 8.869 -5.397 -6.998 1 16.06 ? H22 6JE 201 A 1 HETATM 46 H H25 6JE . . . B 2 6.247 -3.803 -3.97 1 15.9 ? H25 6JE 201 A 1 HETATM 47 H H27 6JE . . . B 2 7.672 -4.743 -2.228 1 13.86 ? H27 6JE 201 A 1 HETATM 48 H H31 6JE . . . B 2 12.682 -13.04 -8.691 1 36.79 ? H31 6JE 201 A 1 HETATM 49 H H33 6JE . . . B 2 11.923 -8.068 -7.072 1 33.17 ? H33 6JE 201 A 1 HETATM 50 H H35 6JE . . . B 2 11.388 -9.747 -8.811 1 34.69 ? H35 6JE 201 A 1 HETATM 51 H H38 6JE . . . B 2 13.817 -12.669 -6.776 1 34.2 ? H38 6JE 201 A 1 HETATM 52 H H40 6JE . . . B 2 14.352 -11.03 -5.061 1 30.5 ? H40 6JE 201 A 1 HETATM 53 H H43 6JE . . . B 2 14.142 -7.746 -5.14 1 27.01 ? H43 6JE 201 A 1 HETATM 54 H H461 6JE . . . B 2 13.857 -6.566 -3.284 1 14.74 ? H461 6JE 201 A 1 HETATM 55 H H462 6JE . . . B 2 14.156 -7.798 -2.052 1 14.74 ? H462 6JE 201 A 1 HETATM 56 H H49 6JE . . . B 2 11.736 -7.754 -1.399 1 12.82 ? H49 6JE 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #