data_5WMJ # _model_server_result.job_id DX-vNokS8TeUYTxS6ucOGA _model_server_result.datetime_utc '2024-11-26 03:42:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wmj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5WMJ # _exptl.entry_id 5WMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.023 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trifluoroacetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WMJ _cell.length_a 9.518 _cell.length_b 20.282 _cell.length_c 44.249 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1,2,3,4 B,C,E 1 1,2,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 9.518 0 0 3 'crystal symmetry operation' 4_545 x+1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 4.759 -10.141 0 4 'crystal symmetry operation' 4_645 x+3/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 14.277 -10.141 0 5 'crystal symmetry operation' 4_535 x+1/2,-y-3/2,-z 1 0 0 0 -1 0 0 0 -1 4.759 -30.423 0 6 'crystal symmetry operation' 4_635 x+3/2,-y-3/2,-z 1 0 0 0 -1 0 0 0 -1 14.277 -30.423 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H F3 O2' _chem_comp.formula_weight 114.023 _chem_comp.id TFA _chem_comp.mon_nstd_flag . _chem_comp.name 'trifluoroacetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TFA sing 70 n n C1 O TFA doub 71 n n C1 OXT TFA sing 72 n n C2 F1 TFA sing 73 n n C2 F2 TFA sing 74 n n C2 F3 TFA sing 75 n n OXT HXT TFA sing 76 n n # _atom_sites.entry_id 5WMJ _atom_sites.fract_transf_matrix[1][1] 0.105064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.049305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TFA B 1 101 101 TFA TFA . D 3 HOH A 1 101 102 HOH HOH . D 3 HOH A 2 102 101 HOH HOH . E 3 HOH B 1 201 201 HOH HOH . E 3 HOH B 2 202 203 HOH HOH . E 3 HOH B 3 203 202 HOH HOH . E 3 HOH B 4 204 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TFA . . . C 2 -4.353 -8.088 6.041 1 12.83 ? C1 TFA 101 B 1 HETATM 2 C C2 TFA . . . C 2 -5.287 -7.085 5.376 1 13.55 ? C2 TFA 101 B 1 HETATM 3 O O TFA . . . C 2 -4.786 -8.868 6.968 1 12.7 ? O TFA 101 B 1 HETATM 4 F F1 TFA . . . C 2 -6.482 -7.19 5.861 1 12.01 ? F1 TFA 101 B 1 HETATM 5 F F2 TFA . . . C 2 -4.87 -5.805 5.435 1 13.25 ? F2 TFA 101 B 1 HETATM 6 F F3 TFA . . . C 2 -5.337 -7.389 4.076 1 12.57 ? F3 TFA 101 B 1 HETATM 7 O OXT TFA . . . C 2 -3.165 -8.134 5.524 1 11.18 ? OXT TFA 101 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #