data_5WMV
#
_model_server_result.job_id            v9hK1bhorRHWgxAyfMQuNg 
_model_server_result.datetime_utc      '2024-11-27 19:29:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":500}' 
#
_entry.id    5WMV 
#
_exptl.entry_id    5WMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              26.017 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYANIDE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WMV 
_cell.length_a            89.092 
_cell.length_b            97.705 
_cell.length_c            127.108 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 D FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc2 C C CYN . A CYN 500 1_555 D FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 sing 
metalc ? metalc3 B NE2 HIS 336 B HIS 346 1_555 H FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc4 G C CYN . B CYN 500 1_555 H FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 sing 
#
_chem_comp.formula           'C N -1' 
_chem_comp.formula_weight    26.017 
_chem_comp.id                CYN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYANIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             C 
_chem_comp_bond.atom_id_2             N 
_chem_comp_bond.comp_id               CYN 
_chem_comp_bond.value_order           trip 
_chem_comp_bond.pdbx_ordinal          70 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     5WMV 
_atom_sites.fract_transf_matrix[1][1]    0.011224 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007867 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CYN A 1 500 500 CYN CYN . 
D 3 HEM A 1 501 501 HEM HEM . 
E 4 TRP A 1 502 502 TRP TRP . 
F 5 ZCW A 1 503 503 ZCW IDE . 
G 2 CYN B 1 500 500 CYN CYN . 
H 3 HEM B 1 501 501 HEM HEM . 
I 4 TRP B 1 502 502 TRP TRP . 
J 5 ZCW B 1 503 503 ZCW IDE . 
K 6 HOH A 1 601 35 HOH HOH . 
K 6 HOH A 2 602 139 HOH HOH . 
K 6 HOH A 3 603 102 HOH HOH . 
K 6 HOH A 4 604 61 HOH HOH . 
K 6 HOH A 5 605 62 HOH HOH . 
K 6 HOH A 6 606 3 HOH HOH . 
K 6 HOH A 7 607 137 HOH HOH . 
K 6 HOH A 8 608 2 HOH HOH . 
K 6 HOH A 9 609 114 HOH HOH . 
K 6 HOH A 10 610 138 HOH HOH . 
K 6 HOH A 11 611 94 HOH HOH . 
K 6 HOH A 12 612 17 HOH HOH . 
K 6 HOH A 13 613 100 HOH HOH . 
K 6 HOH A 14 614 40 HOH HOH . 
K 6 HOH A 15 615 45 HOH HOH . 
K 6 HOH A 16 616 115 HOH HOH . 
K 6 HOH A 17 617 46 HOH HOH . 
K 6 HOH A 18 618 6 HOH HOH . 
K 6 HOH A 19 619 135 HOH HOH . 
K 6 HOH A 20 620 75 HOH HOH . 
K 6 HOH A 21 621 10 HOH HOH . 
K 6 HOH A 22 622 118 HOH HOH . 
K 6 HOH A 23 623 144 HOH HOH . 
K 6 HOH A 24 624 116 HOH HOH . 
K 6 HOH A 25 625 19 HOH HOH . 
K 6 HOH A 26 626 22 HOH HOH . 
K 6 HOH A 27 627 132 HOH HOH . 
K 6 HOH A 28 628 126 HOH HOH . 
K 6 HOH A 29 629 113 HOH HOH . 
K 6 HOH A 30 630 15 HOH HOH . 
K 6 HOH A 31 631 123 HOH HOH . 
K 6 HOH A 32 632 141 HOH HOH . 
K 6 HOH A 33 633 50 HOH HOH . 
K 6 HOH A 34 634 101 HOH HOH . 
K 6 HOH A 35 635 96 HOH HOH . 
K 6 HOH A 36 636 83 HOH HOH . 
K 6 HOH A 37 637 14 HOH HOH . 
K 6 HOH A 38 638 80 HOH HOH . 
K 6 HOH A 39 639 98 HOH HOH . 
K 6 HOH A 40 640 9 HOH HOH . 
K 6 HOH A 41 641 63 HOH HOH . 
K 6 HOH A 42 642 31 HOH HOH . 
K 6 HOH A 43 643 140 HOH HOH . 
K 6 HOH A 44 644 36 HOH HOH . 
K 6 HOH A 45 645 89 HOH HOH . 
K 6 HOH A 46 646 71 HOH HOH . 
K 6 HOH A 47 647 131 HOH HOH . 
K 6 HOH A 48 648 133 HOH HOH . 
K 6 HOH A 49 649 65 HOH HOH . 
K 6 HOH A 50 650 130 HOH HOH . 
K 6 HOH A 51 651 64 HOH HOH . 
K 6 HOH A 52 652 34 HOH HOH . 
K 6 HOH A 53 653 44 HOH HOH . 
K 6 HOH A 54 654 8 HOH HOH . 
K 6 HOH A 55 655 134 HOH HOH . 
K 6 HOH A 56 656 129 HOH HOH . 
K 6 HOH A 57 657 105 HOH HOH . 
K 6 HOH A 58 658 136 HOH HOH . 
K 6 HOH A 59 659 82 HOH HOH . 
K 6 HOH A 60 660 32 HOH HOH . 
K 6 HOH A 61 661 47 HOH HOH . 
K 6 HOH A 62 662 143 HOH HOH . 
K 6 HOH A 63 663 43 HOH HOH . 
K 6 HOH A 64 664 33 HOH HOH . 
K 6 HOH A 65 665 142 HOH HOH . 
K 6 HOH A 66 666 30 HOH HOH . 
K 6 HOH A 67 667 48 HOH HOH . 
K 6 HOH A 68 668 37 HOH HOH . 
K 6 HOH A 69 669 38 HOH HOH . 
L 6 HOH B 1 601 4 HOH HOH . 
L 6 HOH B 2 602 153 HOH HOH . 
L 6 HOH B 3 603 150 HOH HOH . 
L 6 HOH B 4 604 20 HOH HOH . 
L 6 HOH B 5 605 67 HOH HOH . 
L 6 HOH B 6 606 111 HOH HOH . 
L 6 HOH B 7 607 5 HOH HOH . 
L 6 HOH B 8 608 58 HOH HOH . 
L 6 HOH B 9 609 26 HOH HOH . 
L 6 HOH B 10 610 91 HOH HOH . 
L 6 HOH B 11 611 70 HOH HOH . 
L 6 HOH B 12 612 147 HOH HOH . 
L 6 HOH B 13 613 146 HOH HOH . 
L 6 HOH B 14 614 85 HOH HOH . 
L 6 HOH B 15 615 103 HOH HOH . 
L 6 HOH B 16 616 90 HOH HOH . 
L 6 HOH B 17 617 53 HOH HOH . 
L 6 HOH B 18 618 87 HOH HOH . 
L 6 HOH B 19 619 76 HOH HOH . 
L 6 HOH B 20 620 125 HOH HOH . 
L 6 HOH B 21 621 72 HOH HOH . 
L 6 HOH B 22 622 155 HOH HOH . 
L 6 HOH B 23 623 108 HOH HOH . 
L 6 HOH B 24 624 42 HOH HOH . 
L 6 HOH B 25 625 93 HOH HOH . 
L 6 HOH B 26 626 11 HOH HOH . 
L 6 HOH B 27 627 157 HOH HOH . 
L 6 HOH B 28 628 52 HOH HOH . 
L 6 HOH B 29 629 84 HOH HOH . 
L 6 HOH B 30 630 28 HOH HOH . 
L 6 HOH B 31 631 13 HOH HOH . 
L 6 HOH B 32 632 107 HOH HOH . 
L 6 HOH B 33 633 145 HOH HOH . 
L 6 HOH B 34 634 25 HOH HOH . 
L 6 HOH B 35 635 110 HOH HOH . 
L 6 HOH B 36 636 68 HOH HOH . 
L 6 HOH B 37 637 97 HOH HOH . 
L 6 HOH B 38 638 81 HOH HOH . 
L 6 HOH B 39 639 154 HOH HOH . 
L 6 HOH B 40 640 109 HOH HOH . 
L 6 HOH B 41 641 119 HOH HOH . 
L 6 HOH B 42 642 16 HOH HOH . 
L 6 HOH B 43 643 156 HOH HOH . 
L 6 HOH B 44 644 51 HOH HOH . 
L 6 HOH B 45 645 92 HOH HOH . 
L 6 HOH B 46 646 121 HOH HOH . 
L 6 HOH B 47 647 1 HOH HOH . 
L 6 HOH B 48 648 99 HOH HOH . 
L 6 HOH B 49 649 66 HOH HOH . 
L 6 HOH B 50 650 149 HOH HOH . 
L 6 HOH B 51 651 18 HOH HOH . 
L 6 HOH B 52 652 74 HOH HOH . 
L 6 HOH B 53 653 78 HOH HOH . 
L 6 HOH B 54 654 88 HOH HOH . 
L 6 HOH B 55 655 124 HOH HOH . 
L 6 HOH B 56 656 7 HOH HOH . 
L 6 HOH B 57 657 79 HOH HOH . 
L 6 HOH B 58 658 112 HOH HOH . 
L 6 HOH B 59 659 122 HOH HOH . 
L 6 HOH B 60 660 69 HOH HOH . 
L 6 HOH B 61 661 73 HOH HOH . 
L 6 HOH B 62 662 57 HOH HOH . 
L 6 HOH B 63 663 151 HOH HOH . 
L 6 HOH B 64 664 54 HOH HOH . 
L 6 HOH B 65 665 120 HOH HOH . 
L 6 HOH B 66 666 127 HOH HOH . 
L 6 HOH B 67 667 12 HOH HOH . 
L 6 HOH B 68 668 106 HOH HOH . 
L 6 HOH B 69 669 77 HOH HOH . 
L 6 HOH B 70 670 59 HOH HOH . 
L 6 HOH B 71 671 158 HOH HOH . 
L 6 HOH B 72 672 95 HOH HOH . 
L 6 HOH B 73 673 117 HOH HOH . 
L 6 HOH B 74 674 55 HOH HOH . 
L 6 HOH B 75 675 86 HOH HOH . 
L 6 HOH B 76 676 49 HOH HOH . 
L 6 HOH B 77 677 152 HOH HOH . 
L 6 HOH B 78 678 21 HOH HOH . 
L 6 HOH B 79 679 128 HOH HOH . 
L 6 HOH B 80 680 29 HOH HOH . 
L 6 HOH B 81 681 148 HOH HOH . 
L 6 HOH B 82 682 24 HOH HOH . 
L 6 HOH B 83 683 56 HOH HOH . 
L 6 HOH B 84 684 60 HOH HOH . 
L 6 HOH B 85 685 23 HOH HOH . 
L 6 HOH B 86 686 41 HOH HOH . 
L 6 HOH B 87 687 104 HOH HOH . 
L 6 HOH B 88 688 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C CYN . . . G 2 104.591 31.177 32.563 1 71.43 ? C CYN 500 B 1 
HETATM 2 N N CYN . . . G 2 103.892 30.042 32.639 1 72.4 ? N CYN 500 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           2 
#