data_5WMV
#
_model_server_result.job_id            z2kVnycTy1cX2dPuck9xDQ 
_model_server_result.datetime_utc      '2024-11-24 01:26:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":502}' 
#
_entry.id    5WMV 
#
_exptl.entry_id    5WMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.225 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRYPTOPHAN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WMV 
_cell.length_a            89.092 
_cell.length_b            97.705 
_cell.length_c            127.108 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 D FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc2 C C CYN . A CYN 500 1_555 D FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 sing 
metalc ? metalc3 B NE2 HIS 336 B HIS 346 1_555 H FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc4 G C CYN . B CYN 500 1_555 H FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 sing 
#
_chem_comp.formula           'C11 H12 N2 O2' 
_chem_comp.formula_weight    204.225 
_chem_comp.id                TRP 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              TRYPTOPHAN 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA TRP sing 389 n n 
N H TRP sing 390 n n 
N H2 TRP sing 391 n n 
CA C TRP sing 392 n n 
CA CB TRP sing 393 n n 
CA HA TRP sing 394 n n 
C O TRP doub 395 n n 
C OXT TRP sing 396 n n 
CB CG TRP sing 397 n n 
CB HB2 TRP sing 398 n n 
CB HB3 TRP sing 399 n n 
CG CD1 TRP doub 400 n y 
CG CD2 TRP sing 401 n y 
CD1 NE1 TRP sing 402 n y 
CD1 HD1 TRP sing 403 n n 
CD2 CE2 TRP doub 404 n y 
CD2 CE3 TRP sing 405 n y 
NE1 CE2 TRP sing 406 n y 
NE1 HE1 TRP sing 407 n n 
CE2 CZ2 TRP sing 408 n y 
CE3 CZ3 TRP doub 409 n y 
CE3 HE3 TRP sing 410 n n 
CZ2 CH2 TRP doub 411 n y 
CZ2 HZ2 TRP sing 412 n n 
CZ3 CH2 TRP sing 413 n y 
CZ3 HZ3 TRP sing 414 n n 
CH2 HH2 TRP sing 415 n n 
OXT HXT TRP sing 416 n n 
#
_atom_sites.entry_id                     5WMV 
_atom_sites.fract_transf_matrix[1][1]    0.011224 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007867 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CYN A 1 500 500 CYN CYN . 
D 3 HEM A 1 501 501 HEM HEM . 
E 4 TRP A 1 502 502 TRP TRP . 
F 5 ZCW A 1 503 503 ZCW IDE . 
G 2 CYN B 1 500 500 CYN CYN . 
H 3 HEM B 1 501 501 HEM HEM . 
I 4 TRP B 1 502 502 TRP TRP . 
J 5 ZCW B 1 503 503 ZCW IDE . 
K 6 HOH A 1 601 35 HOH HOH . 
K 6 HOH A 2 602 139 HOH HOH . 
K 6 HOH A 3 603 102 HOH HOH . 
K 6 HOH A 4 604 61 HOH HOH . 
K 6 HOH A 5 605 62 HOH HOH . 
K 6 HOH A 6 606 3 HOH HOH . 
K 6 HOH A 7 607 137 HOH HOH . 
K 6 HOH A 8 608 2 HOH HOH . 
K 6 HOH A 9 609 114 HOH HOH . 
K 6 HOH A 10 610 138 HOH HOH . 
K 6 HOH A 11 611 94 HOH HOH . 
K 6 HOH A 12 612 17 HOH HOH . 
K 6 HOH A 13 613 100 HOH HOH . 
K 6 HOH A 14 614 40 HOH HOH . 
K 6 HOH A 15 615 45 HOH HOH . 
K 6 HOH A 16 616 115 HOH HOH . 
K 6 HOH A 17 617 46 HOH HOH . 
K 6 HOH A 18 618 6 HOH HOH . 
K 6 HOH A 19 619 135 HOH HOH . 
K 6 HOH A 20 620 75 HOH HOH . 
K 6 HOH A 21 621 10 HOH HOH . 
K 6 HOH A 22 622 118 HOH HOH . 
K 6 HOH A 23 623 144 HOH HOH . 
K 6 HOH A 24 624 116 HOH HOH . 
K 6 HOH A 25 625 19 HOH HOH . 
K 6 HOH A 26 626 22 HOH HOH . 
K 6 HOH A 27 627 132 HOH HOH . 
K 6 HOH A 28 628 126 HOH HOH . 
K 6 HOH A 29 629 113 HOH HOH . 
K 6 HOH A 30 630 15 HOH HOH . 
K 6 HOH A 31 631 123 HOH HOH . 
K 6 HOH A 32 632 141 HOH HOH . 
K 6 HOH A 33 633 50 HOH HOH . 
K 6 HOH A 34 634 101 HOH HOH . 
K 6 HOH A 35 635 96 HOH HOH . 
K 6 HOH A 36 636 83 HOH HOH . 
K 6 HOH A 37 637 14 HOH HOH . 
K 6 HOH A 38 638 80 HOH HOH . 
K 6 HOH A 39 639 98 HOH HOH . 
K 6 HOH A 40 640 9 HOH HOH . 
K 6 HOH A 41 641 63 HOH HOH . 
K 6 HOH A 42 642 31 HOH HOH . 
K 6 HOH A 43 643 140 HOH HOH . 
K 6 HOH A 44 644 36 HOH HOH . 
K 6 HOH A 45 645 89 HOH HOH . 
K 6 HOH A 46 646 71 HOH HOH . 
K 6 HOH A 47 647 131 HOH HOH . 
K 6 HOH A 48 648 133 HOH HOH . 
K 6 HOH A 49 649 65 HOH HOH . 
K 6 HOH A 50 650 130 HOH HOH . 
K 6 HOH A 51 651 64 HOH HOH . 
K 6 HOH A 52 652 34 HOH HOH . 
K 6 HOH A 53 653 44 HOH HOH . 
K 6 HOH A 54 654 8 HOH HOH . 
K 6 HOH A 55 655 134 HOH HOH . 
K 6 HOH A 56 656 129 HOH HOH . 
K 6 HOH A 57 657 105 HOH HOH . 
K 6 HOH A 58 658 136 HOH HOH . 
K 6 HOH A 59 659 82 HOH HOH . 
K 6 HOH A 60 660 32 HOH HOH . 
K 6 HOH A 61 661 47 HOH HOH . 
K 6 HOH A 62 662 143 HOH HOH . 
K 6 HOH A 63 663 43 HOH HOH . 
K 6 HOH A 64 664 33 HOH HOH . 
K 6 HOH A 65 665 142 HOH HOH . 
K 6 HOH A 66 666 30 HOH HOH . 
K 6 HOH A 67 667 48 HOH HOH . 
K 6 HOH A 68 668 37 HOH HOH . 
K 6 HOH A 69 669 38 HOH HOH . 
L 6 HOH B 1 601 4 HOH HOH . 
L 6 HOH B 2 602 153 HOH HOH . 
L 6 HOH B 3 603 150 HOH HOH . 
L 6 HOH B 4 604 20 HOH HOH . 
L 6 HOH B 5 605 67 HOH HOH . 
L 6 HOH B 6 606 111 HOH HOH . 
L 6 HOH B 7 607 5 HOH HOH . 
L 6 HOH B 8 608 58 HOH HOH . 
L 6 HOH B 9 609 26 HOH HOH . 
L 6 HOH B 10 610 91 HOH HOH . 
L 6 HOH B 11 611 70 HOH HOH . 
L 6 HOH B 12 612 147 HOH HOH . 
L 6 HOH B 13 613 146 HOH HOH . 
L 6 HOH B 14 614 85 HOH HOH . 
L 6 HOH B 15 615 103 HOH HOH . 
L 6 HOH B 16 616 90 HOH HOH . 
L 6 HOH B 17 617 53 HOH HOH . 
L 6 HOH B 18 618 87 HOH HOH . 
L 6 HOH B 19 619 76 HOH HOH . 
L 6 HOH B 20 620 125 HOH HOH . 
L 6 HOH B 21 621 72 HOH HOH . 
L 6 HOH B 22 622 155 HOH HOH . 
L 6 HOH B 23 623 108 HOH HOH . 
L 6 HOH B 24 624 42 HOH HOH . 
L 6 HOH B 25 625 93 HOH HOH . 
L 6 HOH B 26 626 11 HOH HOH . 
L 6 HOH B 27 627 157 HOH HOH . 
L 6 HOH B 28 628 52 HOH HOH . 
L 6 HOH B 29 629 84 HOH HOH . 
L 6 HOH B 30 630 28 HOH HOH . 
L 6 HOH B 31 631 13 HOH HOH . 
L 6 HOH B 32 632 107 HOH HOH . 
L 6 HOH B 33 633 145 HOH HOH . 
L 6 HOH B 34 634 25 HOH HOH . 
L 6 HOH B 35 635 110 HOH HOH . 
L 6 HOH B 36 636 68 HOH HOH . 
L 6 HOH B 37 637 97 HOH HOH . 
L 6 HOH B 38 638 81 HOH HOH . 
L 6 HOH B 39 639 154 HOH HOH . 
L 6 HOH B 40 640 109 HOH HOH . 
L 6 HOH B 41 641 119 HOH HOH . 
L 6 HOH B 42 642 16 HOH HOH . 
L 6 HOH B 43 643 156 HOH HOH . 
L 6 HOH B 44 644 51 HOH HOH . 
L 6 HOH B 45 645 92 HOH HOH . 
L 6 HOH B 46 646 121 HOH HOH . 
L 6 HOH B 47 647 1 HOH HOH . 
L 6 HOH B 48 648 99 HOH HOH . 
L 6 HOH B 49 649 66 HOH HOH . 
L 6 HOH B 50 650 149 HOH HOH . 
L 6 HOH B 51 651 18 HOH HOH . 
L 6 HOH B 52 652 74 HOH HOH . 
L 6 HOH B 53 653 78 HOH HOH . 
L 6 HOH B 54 654 88 HOH HOH . 
L 6 HOH B 55 655 124 HOH HOH . 
L 6 HOH B 56 656 7 HOH HOH . 
L 6 HOH B 57 657 79 HOH HOH . 
L 6 HOH B 58 658 112 HOH HOH . 
L 6 HOH B 59 659 122 HOH HOH . 
L 6 HOH B 60 660 69 HOH HOH . 
L 6 HOH B 61 661 73 HOH HOH . 
L 6 HOH B 62 662 57 HOH HOH . 
L 6 HOH B 63 663 151 HOH HOH . 
L 6 HOH B 64 664 54 HOH HOH . 
L 6 HOH B 65 665 120 HOH HOH . 
L 6 HOH B 66 666 127 HOH HOH . 
L 6 HOH B 67 667 12 HOH HOH . 
L 6 HOH B 68 668 106 HOH HOH . 
L 6 HOH B 69 669 77 HOH HOH . 
L 6 HOH B 70 670 59 HOH HOH . 
L 6 HOH B 71 671 158 HOH HOH . 
L 6 HOH B 72 672 95 HOH HOH . 
L 6 HOH B 73 673 117 HOH HOH . 
L 6 HOH B 74 674 55 HOH HOH . 
L 6 HOH B 75 675 86 HOH HOH . 
L 6 HOH B 76 676 49 HOH HOH . 
L 6 HOH B 77 677 152 HOH HOH . 
L 6 HOH B 78 678 21 HOH HOH . 
L 6 HOH B 79 679 128 HOH HOH . 
L 6 HOH B 80 680 29 HOH HOH . 
L 6 HOH B 81 681 148 HOH HOH . 
L 6 HOH B 82 682 24 HOH HOH . 
L 6 HOH B 83 683 56 HOH HOH . 
L 6 HOH B 84 684 60 HOH HOH . 
L 6 HOH B 85 685 23 HOH HOH . 
L 6 HOH B 86 686 41 HOH HOH . 
L 6 HOH B 87 687 104 HOH HOH . 
L 6 HOH B 88 688 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N TRP . . . I 4 102.934 28.733 35.15 1 79.62 ? N TRP 502 B 1 
HETATM 2 C CA TRP . . . I 4 102.5 29.88 35.998 1 80.68 ? CA TRP 502 B 1 
HETATM 3 C C TRP . . . I 4 102.508 29.519 37.486 1 83.16 ? C TRP 502 B 1 
HETATM 4 O O TRP . . . I 4 102.755 28.373 37.868 1 84.47 ? O TRP 502 B 1 
HETATM 5 C CB TRP . . . I 4 101.114 30.38 35.564 1 78.92 ? CB TRP 502 B 1 
HETATM 6 C CG TRP . . . I 4 101.085 30.978 34.178 1 77.42 ? CG TRP 502 B 1 
HETATM 7 C CD1 TRP . . . I 4 101.83 32.032 33.724 1 77.77 ? CD1 TRP 502 B 1 
HETATM 8 C CD2 TRP . . . I 4 100.25 30.577 33.079 1 75.66 ? CD2 TRP 502 B 1 
HETATM 9 N NE1 TRP . . . I 4 101.532 32.296 32.406 1 76.31 ? NE1 TRP 502 B 1 
HETATM 10 C CE2 TRP . . . I 4 100.563 31.423 31.986 1 75.07 ? CE2 TRP 502 B 1 
HETATM 11 C CE3 TRP . . . I 4 99.269 29.585 32.909 1 74.61 ? CE3 TRP 502 B 1 
HETATM 12 C CZ2 TRP . . . I 4 99.928 31.31 30.738 1 73.46 ? CZ2 TRP 502 B 1 
HETATM 13 C CZ3 TRP . . . I 4 98.64 29.469 31.662 1 73.16 ? CZ3 TRP 502 B 1 
HETATM 14 C CH2 TRP . . . I 4 98.976 30.329 30.595 1 72.8 ? CH2 TRP 502 B 1 
HETATM 15 O OXT TRP . . . I 4 102.279 30.365 38.35 1 84.76 ? OXT TRP 502 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#