data_5WMW # _model_server_result.job_id zDKtHbfbU8-SMyRbgsq1_A _model_server_result.datetime_utc '2024-11-01 15:26:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5WMW # _exptl.entry_id 5WMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WMW _cell.length_a 88.192 _cell.length_b 97.907 _cell.length_c 127.863 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D C CYN . A CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 sing metalc ? metalc3 B NE2 HIS 336 B HIS 346 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc4 G FE HEM . B HEM 501 1_555 H C CYN . B CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 sing # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 5WMW _atom_sites.fract_transf_matrix[1][1] 0.011339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 CYN A 1 502 500 CYN CYN . E 4 TRP A 1 503 502 TRP TRP . F 4 TRP A 1 504 503 TRP TRP . G 2 HEM B 1 501 501 HEM HEM . H 3 CYN B 1 502 500 CYN CYN . I 4 TRP B 1 503 502 TRP TRP . J 4 TRP B 1 504 1 TRP TRP . K 5 HOH A 1 601 28 HOH HOH . K 5 HOH A 2 602 56 HOH HOH . K 5 HOH A 3 603 61 HOH HOH . K 5 HOH A 4 604 36 HOH HOH . K 5 HOH A 5 605 4 HOH HOH . K 5 HOH A 6 606 54 HOH HOH . K 5 HOH A 7 607 47 HOH HOH . K 5 HOH A 8 608 59 HOH HOH . K 5 HOH A 9 609 19 HOH HOH . K 5 HOH A 10 610 52 HOH HOH . K 5 HOH A 11 611 40 HOH HOH . K 5 HOH A 12 612 35 HOH HOH . K 5 HOH A 13 613 34 HOH HOH . K 5 HOH A 14 614 24 HOH HOH . K 5 HOH A 15 615 110 HOH HOH . K 5 HOH A 16 616 37 HOH HOH . K 5 HOH A 17 617 6 HOH HOH . K 5 HOH A 18 618 23 HOH HOH . K 5 HOH A 19 619 30 HOH HOH . K 5 HOH A 20 620 33 HOH HOH . K 5 HOH A 21 621 17 HOH HOH . K 5 HOH A 22 622 50 HOH HOH . K 5 HOH A 23 623 10 HOH HOH . K 5 HOH A 24 624 58 HOH HOH . K 5 HOH A 25 625 53 HOH HOH . K 5 HOH A 26 626 81 HOH HOH . K 5 HOH A 27 627 1 HOH HOH . K 5 HOH A 28 628 25 HOH HOH . K 5 HOH A 29 629 43 HOH HOH . K 5 HOH A 30 630 55 HOH HOH . K 5 HOH A 31 631 57 HOH HOH . K 5 HOH A 32 632 20 HOH HOH . K 5 HOH A 33 633 2 HOH HOH . K 5 HOH A 34 634 18 HOH HOH . K 5 HOH A 35 635 48 HOH HOH . K 5 HOH A 36 636 27 HOH HOH . K 5 HOH A 37 637 8 HOH HOH . K 5 HOH A 38 638 51 HOH HOH . K 5 HOH A 39 639 60 HOH HOH . K 5 HOH A 40 640 14 HOH HOH . K 5 HOH A 41 641 31 HOH HOH . K 5 HOH A 42 642 22 HOH HOH . K 5 HOH A 43 643 41 HOH HOH . K 5 HOH A 44 644 7 HOH HOH . K 5 HOH A 45 645 11 HOH HOH . K 5 HOH A 46 646 109 HOH HOH . K 5 HOH A 47 647 108 HOH HOH . K 5 HOH A 48 648 45 HOH HOH . K 5 HOH A 49 649 26 HOH HOH . K 5 HOH A 50 650 29 HOH HOH . K 5 HOH A 51 651 21 HOH HOH . L 5 HOH B 1 601 101 HOH HOH . L 5 HOH B 2 602 72 HOH HOH . L 5 HOH B 3 603 74 HOH HOH . L 5 HOH B 4 604 75 HOH HOH . L 5 HOH B 5 605 3 HOH HOH . L 5 HOH B 6 606 105 HOH HOH . L 5 HOH B 7 607 69 HOH HOH . L 5 HOH B 8 608 76 HOH HOH . L 5 HOH B 9 609 91 HOH HOH . L 5 HOH B 10 610 114 HOH HOH . L 5 HOH B 11 611 87 HOH HOH . L 5 HOH B 12 612 96 HOH HOH . L 5 HOH B 13 613 68 HOH HOH . L 5 HOH B 14 614 85 HOH HOH . L 5 HOH B 15 615 100 HOH HOH . L 5 HOH B 16 616 97 HOH HOH . L 5 HOH B 17 617 5 HOH HOH . L 5 HOH B 18 618 38 HOH HOH . L 5 HOH B 19 619 103 HOH HOH . L 5 HOH B 20 620 84 HOH HOH . L 5 HOH B 21 621 78 HOH HOH . L 5 HOH B 22 622 98 HOH HOH . L 5 HOH B 23 623 90 HOH HOH . L 5 HOH B 24 624 107 HOH HOH . L 5 HOH B 25 625 12 HOH HOH . L 5 HOH B 26 626 73 HOH HOH . L 5 HOH B 27 627 112 HOH HOH . L 5 HOH B 28 628 88 HOH HOH . L 5 HOH B 29 629 106 HOH HOH . L 5 HOH B 30 630 62 HOH HOH . L 5 HOH B 31 631 86 HOH HOH . L 5 HOH B 32 632 79 HOH HOH . L 5 HOH B 33 633 9 HOH HOH . L 5 HOH B 34 634 94 HOH HOH . L 5 HOH B 35 635 111 HOH HOH . L 5 HOH B 36 636 102 HOH HOH . L 5 HOH B 37 637 83 HOH HOH . L 5 HOH B 38 638 93 HOH HOH . L 5 HOH B 39 639 104 HOH HOH . L 5 HOH B 40 640 46 HOH HOH . L 5 HOH B 41 641 49 HOH HOH . L 5 HOH B 42 642 95 HOH HOH . L 5 HOH B 43 643 77 HOH HOH . L 5 HOH B 44 644 70 HOH HOH . L 5 HOH B 45 645 92 HOH HOH . L 5 HOH B 46 646 39 HOH HOH . L 5 HOH B 47 647 65 HOH HOH . L 5 HOH B 48 648 15 HOH HOH . L 5 HOH B 49 649 67 HOH HOH . L 5 HOH B 50 650 115 HOH HOH . L 5 HOH B 51 651 64 HOH HOH . L 5 HOH B 52 652 113 HOH HOH . L 5 HOH B 53 653 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 195.762 95.4 147.878 1 81.95 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 197.414 90.956 148.846 1 85.8 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 198.654 90.445 144.16 1 83.96 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 196.363 94.578 143.149 1 80.16 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 196.146 94.261 148.536 1 83.03 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 196.097 94.093 149.937 1 84.5 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 196.552 92.839 150.213 1 85.46 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 196.875 92.227 148.98 1 84.79 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 196.68 92.2 151.578 1 87.18 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 195.606 95.133 150.919 1 85.33 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 196.597 96.302 151.047 1 85.89 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 197.673 96.011 152.062 1 88.29 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 198.736 95.454 151.707 1 89.19 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 197.516 96.338 153.259 1 90.04 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 197.927 90.429 147.647 1 85.27 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 198.611 89.177 147.555 1 86.76 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 198.981 89.006 146.241 1 86.42 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 198.496 90.225 145.537 1 84.55 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 198.866 88.22 148.693 1 88.66 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 199.725 87.901 145.572 1 88.06 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 200.271 86.827 146.147 1 90.32 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 198.127 91.521 143.443 1 83.08 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 198.29 91.749 142.061 1 83.53 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 197.615 92.937 141.759 1 82.74 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 197.054 93.409 142.987 1 81.43 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 199.034 90.845 141.098 1 84.66 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 197.49 93.672 140.471 1 83.21 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 198.169 93.424 139.357 1 84.68 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 196.048 95.104 144.398 1 79.7 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 195.455 96.449 144.496 1 78.41 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 195.29 96.681 145.808 1 78.52 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 195.801 95.483 146.496 1 80.46 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 195.09 97.38 143.356 1 77.74 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 194.694 97.922 146.438 1 77.92 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 193.217 97.689 146.774 1 77.24 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 192.367 97.506 145.533 1 75.83 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 191.673 96.472 145.409 1 75.25 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 192.341 98.376 144.631 1 74.09 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 196.657 93.124 147.964 1 83.26 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 197.883 90.997 146.441 1 83.89 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 197.424 92.562 143.985 1 82 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 196.24 94.554 145.616 1 80.72 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 197.006 92.857 146.014 1 82.19 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #