data_5WMW # _model_server_result.job_id 261-pxojCVq-pTyRPhq2FA _model_server_result.datetime_utc '2024-11-01 15:36:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 5WMW # _exptl.entry_id 5WMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 26.017 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYANIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WMW _cell.length_a 88.192 _cell.length_b 97.907 _cell.length_c 127.863 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D C CYN . A CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 sing metalc ? metalc3 B NE2 HIS 336 B HIS 346 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc4 G FE HEM . B HEM 501 1_555 H C CYN . B CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 sing # _chem_comp.formula 'C N -1' _chem_comp.formula_weight 26.017 _chem_comp.id CYN _chem_comp.mon_nstd_flag . _chem_comp.name 'CYANIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 N _chem_comp_bond.comp_id CYN _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 5WMW _atom_sites.fract_transf_matrix[1][1] 0.011339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 CYN A 1 502 500 CYN CYN . E 4 TRP A 1 503 502 TRP TRP . F 4 TRP A 1 504 503 TRP TRP . G 2 HEM B 1 501 501 HEM HEM . H 3 CYN B 1 502 500 CYN CYN . I 4 TRP B 1 503 502 TRP TRP . J 4 TRP B 1 504 1 TRP TRP . K 5 HOH A 1 601 28 HOH HOH . K 5 HOH A 2 602 56 HOH HOH . K 5 HOH A 3 603 61 HOH HOH . K 5 HOH A 4 604 36 HOH HOH . K 5 HOH A 5 605 4 HOH HOH . K 5 HOH A 6 606 54 HOH HOH . K 5 HOH A 7 607 47 HOH HOH . K 5 HOH A 8 608 59 HOH HOH . K 5 HOH A 9 609 19 HOH HOH . K 5 HOH A 10 610 52 HOH HOH . K 5 HOH A 11 611 40 HOH HOH . K 5 HOH A 12 612 35 HOH HOH . K 5 HOH A 13 613 34 HOH HOH . K 5 HOH A 14 614 24 HOH HOH . K 5 HOH A 15 615 110 HOH HOH . K 5 HOH A 16 616 37 HOH HOH . K 5 HOH A 17 617 6 HOH HOH . K 5 HOH A 18 618 23 HOH HOH . K 5 HOH A 19 619 30 HOH HOH . K 5 HOH A 20 620 33 HOH HOH . K 5 HOH A 21 621 17 HOH HOH . K 5 HOH A 22 622 50 HOH HOH . K 5 HOH A 23 623 10 HOH HOH . K 5 HOH A 24 624 58 HOH HOH . K 5 HOH A 25 625 53 HOH HOH . K 5 HOH A 26 626 81 HOH HOH . K 5 HOH A 27 627 1 HOH HOH . K 5 HOH A 28 628 25 HOH HOH . K 5 HOH A 29 629 43 HOH HOH . K 5 HOH A 30 630 55 HOH HOH . K 5 HOH A 31 631 57 HOH HOH . K 5 HOH A 32 632 20 HOH HOH . K 5 HOH A 33 633 2 HOH HOH . K 5 HOH A 34 634 18 HOH HOH . K 5 HOH A 35 635 48 HOH HOH . K 5 HOH A 36 636 27 HOH HOH . K 5 HOH A 37 637 8 HOH HOH . K 5 HOH A 38 638 51 HOH HOH . K 5 HOH A 39 639 60 HOH HOH . K 5 HOH A 40 640 14 HOH HOH . K 5 HOH A 41 641 31 HOH HOH . K 5 HOH A 42 642 22 HOH HOH . K 5 HOH A 43 643 41 HOH HOH . K 5 HOH A 44 644 7 HOH HOH . K 5 HOH A 45 645 11 HOH HOH . K 5 HOH A 46 646 109 HOH HOH . K 5 HOH A 47 647 108 HOH HOH . K 5 HOH A 48 648 45 HOH HOH . K 5 HOH A 49 649 26 HOH HOH . K 5 HOH A 50 650 29 HOH HOH . K 5 HOH A 51 651 21 HOH HOH . L 5 HOH B 1 601 101 HOH HOH . L 5 HOH B 2 602 72 HOH HOH . L 5 HOH B 3 603 74 HOH HOH . L 5 HOH B 4 604 75 HOH HOH . L 5 HOH B 5 605 3 HOH HOH . L 5 HOH B 6 606 105 HOH HOH . L 5 HOH B 7 607 69 HOH HOH . L 5 HOH B 8 608 76 HOH HOH . L 5 HOH B 9 609 91 HOH HOH . L 5 HOH B 10 610 114 HOH HOH . L 5 HOH B 11 611 87 HOH HOH . L 5 HOH B 12 612 96 HOH HOH . L 5 HOH B 13 613 68 HOH HOH . L 5 HOH B 14 614 85 HOH HOH . L 5 HOH B 15 615 100 HOH HOH . L 5 HOH B 16 616 97 HOH HOH . L 5 HOH B 17 617 5 HOH HOH . L 5 HOH B 18 618 38 HOH HOH . L 5 HOH B 19 619 103 HOH HOH . L 5 HOH B 20 620 84 HOH HOH . L 5 HOH B 21 621 78 HOH HOH . L 5 HOH B 22 622 98 HOH HOH . L 5 HOH B 23 623 90 HOH HOH . L 5 HOH B 24 624 107 HOH HOH . L 5 HOH B 25 625 12 HOH HOH . L 5 HOH B 26 626 73 HOH HOH . L 5 HOH B 27 627 112 HOH HOH . L 5 HOH B 28 628 88 HOH HOH . L 5 HOH B 29 629 106 HOH HOH . L 5 HOH B 30 630 62 HOH HOH . L 5 HOH B 31 631 86 HOH HOH . L 5 HOH B 32 632 79 HOH HOH . L 5 HOH B 33 633 9 HOH HOH . L 5 HOH B 34 634 94 HOH HOH . L 5 HOH B 35 635 111 HOH HOH . L 5 HOH B 36 636 102 HOH HOH . L 5 HOH B 37 637 83 HOH HOH . L 5 HOH B 38 638 93 HOH HOH . L 5 HOH B 39 639 104 HOH HOH . L 5 HOH B 40 640 46 HOH HOH . L 5 HOH B 41 641 49 HOH HOH . L 5 HOH B 42 642 95 HOH HOH . L 5 HOH B 43 643 77 HOH HOH . L 5 HOH B 44 644 70 HOH HOH . L 5 HOH B 45 645 92 HOH HOH . L 5 HOH B 46 646 39 HOH HOH . L 5 HOH B 47 647 65 HOH HOH . L 5 HOH B 48 648 15 HOH HOH . L 5 HOH B 49 649 67 HOH HOH . L 5 HOH B 50 650 115 HOH HOH . L 5 HOH B 51 651 64 HOH HOH . L 5 HOH B 52 652 113 HOH HOH . L 5 HOH B 53 653 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CYN . . . H 3 191.711 129.602 160.248 1 95.33 ? C CYN 502 B 1 HETATM 2 N N CYN . . . H 3 190.91 128.581 160.558 1 96.04 ? N CYN 502 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 2 #