data_5WNF # _model_server_result.job_id TZMIj2PyC6HUiN9D-R5vQQ _model_server_result.datetime_utc '2024-11-26 16:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":900}' # _entry.id 5WNF # _exptl.entry_id 5WNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.53 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-amino-1,2,5-oxadiazol-3-yl)-5-methyl-N-({3-[(5-methyl-4,5,6,7-tetrahydro[1,3]thiazolo[5,4-c]pyridin-2-yl)carbamoyl]phenyl}methyl)-1H-1,2,3-triazole-4-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.87 _cell.angle_gamma 90 _cell.entry_id 5WNF _cell.length_a 162.905 _cell.length_b 82.292 _cell.length_c 169.739 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,K,L 1 1 C,D,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C21 H22 N10 O3 S' _chem_comp.formula_weight 494.53 _chem_comp.id B4V _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-amino-1,2,5-oxadiazol-3-yl)-5-methyl-N-({3-[(5-methyl-4,5,6,7-tetrahydro[1,3]thiazolo[5,4-c]pyridin-2-yl)carbamoyl]phenyl}methyl)-1H-1,2,3-triazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N34 C30 B4V sing 70 n n C30 N31 B4V doub 71 n y C30 C29 B4V sing 72 n y N31 O32 B4V sing 73 n y C10 C9 B4V doub 74 n y C10 C11 B4V sing 75 n y C9 C8 B4V sing 76 n y O16 C13 B4V doub 77 n n N26 N25 B4V sing 78 n y N26 N27 B4V doub 79 n y C13 C11 B4V sing 80 n n C13 N15 B4V sing 81 n n S19 C17 B4V sing 82 n y S19 C1 B4V sing 83 n y C11 C12 B4V doub 84 n y C29 N25 B4V sing 85 n n C29 N33 B4V doub 86 n y O32 N33 B4V sing 87 n y N15 C17 B4V sing 88 n n C17 N18 B4V doub 89 n y C1 C6 B4V sing 90 n n C1 C2 B4V doub 91 n y C6 N5 B4V sing 92 n n N25 C24 B4V sing 93 n y N27 C20 B4V sing 94 n y C8 C7 B4V doub 95 n y N18 C2 B4V sing 96 n y C2 C3 B4V sing 97 n n C3 C4 B4V sing 98 n n C4 N5 B4V sing 99 n n C12 C7 B4V sing 100 n y C7 C14 B4V sing 101 n n N5 C35 B4V sing 102 n n C24 C20 B4V doub 103 n y C24 C28 B4V sing 104 n n C20 C21 B4V sing 105 n n N22 C21 B4V sing 106 n n N22 C14 B4V sing 107 n n C21 O23 B4V doub 108 n n C3 H1 B4V sing 109 n n C3 H2 B4V sing 110 n n C4 H3 B4V sing 111 n n C4 H4 B4V sing 112 n n C6 H5 B4V sing 113 n n C6 H6 B4V sing 114 n n C8 H7 B4V sing 115 n n C9 H8 B4V sing 116 n n C10 H9 B4V sing 117 n n C12 H10 B4V sing 118 n n C14 H11 B4V sing 119 n n C14 H12 B4V sing 120 n n N22 H13 B4V sing 121 n n N15 H15 B4V sing 122 n n C28 H16 B4V sing 123 n n C28 H17 B4V sing 124 n n C28 H18 B4V sing 125 n n N34 H19 B4V sing 126 n n N34 H20 B4V sing 127 n n C35 H21 B4V sing 128 n n C35 H22 B4V sing 129 n n C35 H23 B4V sing 130 n n # _atom_sites.entry_id 5WNF _atom_sites.fract_transf_matrix[1][1] 0.006139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002977 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B4V A 1 501 900 B4V B4V . F 3 GOL A 1 502 1 GOL GOL . G 3 GOL A 1 503 2 GOL GOL . H 2 B4V B 1 900 900 B4V B4V . I 2 B4V C 1 900 900 B4V B4V . J 2 B4V D 1 900 900 B4V B4V . K 4 HOH A 1 601 546 HOH HOH . K 4 HOH A 2 602 519 HOH HOH . K 4 HOH A 3 603 626 HOH HOH . K 4 HOH A 4 604 595 HOH HOH . K 4 HOH A 5 605 673 HOH HOH . K 4 HOH A 6 606 503 HOH HOH . K 4 HOH A 7 607 513 HOH HOH . K 4 HOH A 8 608 724 HOH HOH . K 4 HOH A 9 609 644 HOH HOH . K 4 HOH A 10 610 642 HOH HOH . K 4 HOH A 11 611 525 HOH HOH . K 4 HOH A 12 612 622 HOH HOH . K 4 HOH A 13 613 526 HOH HOH . K 4 HOH A 14 614 518 HOH HOH . K 4 HOH A 15 615 719 HOH HOH . K 4 HOH A 16 616 645 HOH HOH . K 4 HOH A 17 617 548 HOH HOH . K 4 HOH A 18 618 680 HOH HOH . K 4 HOH A 19 619 704 HOH HOH . K 4 HOH A 20 620 720 HOH HOH . K 4 HOH A 21 621 573 HOH HOH . K 4 HOH A 22 622 511 HOH HOH . K 4 HOH A 23 623 653 HOH HOH . K 4 HOH A 24 624 549 HOH HOH . K 4 HOH A 25 625 671 HOH HOH . K 4 HOH A 26 626 733 HOH HOH . K 4 HOH A 27 627 726 HOH HOH . K 4 HOH A 28 628 629 HOH HOH . K 4 HOH A 29 629 632 HOH HOH . K 4 HOH A 30 630 528 HOH HOH . K 4 HOH A 31 631 545 HOH HOH . K 4 HOH A 32 632 532 HOH HOH . K 4 HOH A 33 633 522 HOH HOH . K 4 HOH A 34 634 523 HOH HOH . K 4 HOH A 35 635 683 HOH HOH . K 4 HOH A 36 636 557 HOH HOH . K 4 HOH A 37 637 516 HOH HOH . K 4 HOH A 38 638 662 HOH HOH . K 4 HOH A 39 639 649 HOH HOH . K 4 HOH A 40 640 579 HOH HOH . K 4 HOH A 41 641 512 HOH HOH . K 4 HOH A 42 642 678 HOH HOH . K 4 HOH A 43 643 558 HOH HOH . K 4 HOH A 44 644 633 HOH HOH . K 4 HOH A 45 645 601 HOH HOH . K 4 HOH A 46 646 725 HOH HOH . K 4 HOH A 47 647 711 HOH HOH . K 4 HOH A 48 648 539 HOH HOH . K 4 HOH A 49 649 707 HOH HOH . K 4 HOH A 50 650 630 HOH HOH . K 4 HOH A 51 651 555 HOH HOH . K 4 HOH A 52 652 609 HOH HOH . K 4 HOH A 53 653 535 HOH HOH . L 4 HOH B 1 1001 583 HOH HOH . L 4 HOH B 2 1002 599 HOH HOH . L 4 HOH B 3 1003 589 HOH HOH . L 4 HOH B 4 1004 580 HOH HOH . L 4 HOH B 5 1005 655 HOH HOH . L 4 HOH B 6 1006 529 HOH HOH . L 4 HOH B 7 1007 608 HOH HOH . L 4 HOH B 8 1008 508 HOH HOH . L 4 HOH B 9 1009 676 HOH HOH . L 4 HOH B 10 1010 547 HOH HOH . L 4 HOH B 11 1011 592 HOH HOH . L 4 HOH B 12 1012 670 HOH HOH . L 4 HOH B 13 1013 594 HOH HOH . L 4 HOH B 14 1014 564 HOH HOH . L 4 HOH B 15 1015 540 HOH HOH . L 4 HOH B 16 1016 597 HOH HOH . L 4 HOH B 17 1017 554 HOH HOH . M 4 HOH C 1 1001 584 HOH HOH . M 4 HOH C 2 1002 731 HOH HOH . M 4 HOH C 3 1003 738 HOH HOH . M 4 HOH C 4 1004 741 HOH HOH . M 4 HOH C 5 1005 506 HOH HOH . M 4 HOH C 6 1006 510 HOH HOH . M 4 HOH C 7 1007 577 HOH HOH . M 4 HOH C 8 1008 661 HOH HOH . M 4 HOH C 9 1009 688 HOH HOH . M 4 HOH C 10 1010 700 HOH HOH . M 4 HOH C 11 1011 575 HOH HOH . M 4 HOH C 12 1012 574 HOH HOH . M 4 HOH C 13 1013 591 HOH HOH . M 4 HOH C 14 1014 656 HOH HOH . M 4 HOH C 15 1015 624 HOH HOH . M 4 HOH C 16 1016 567 HOH HOH . M 4 HOH C 17 1017 570 HOH HOH . M 4 HOH C 18 1018 736 HOH HOH . M 4 HOH C 19 1019 524 HOH HOH . M 4 HOH C 20 1020 585 HOH HOH . M 4 HOH C 21 1021 637 HOH HOH . M 4 HOH C 22 1022 509 HOH HOH . M 4 HOH C 23 1023 667 HOH HOH . M 4 HOH C 24 1024 536 HOH HOH . M 4 HOH C 25 1025 686 HOH HOH . N 4 HOH D 1 1001 520 HOH HOH . N 4 HOH D 2 1002 534 HOH HOH . N 4 HOH D 3 1003 658 HOH HOH . N 4 HOH D 4 1004 641 HOH HOH . N 4 HOH D 5 1005 581 HOH HOH . N 4 HOH D 6 1006 507 HOH HOH . N 4 HOH D 7 1007 566 HOH HOH . N 4 HOH D 8 1008 542 HOH HOH . N 4 HOH D 9 1009 569 HOH HOH . N 4 HOH D 10 1010 735 HOH HOH . N 4 HOH D 11 1011 708 HOH HOH . N 4 HOH D 12 1012 514 HOH HOH . N 4 HOH D 13 1013 721 HOH HOH . N 4 HOH D 14 1014 647 HOH HOH . N 4 HOH D 15 1015 505 HOH HOH . N 4 HOH D 16 1016 722 HOH HOH . N 4 HOH D 17 1017 596 HOH HOH . N 4 HOH D 18 1018 530 HOH HOH . N 4 HOH D 19 1019 732 HOH HOH . N 4 HOH D 20 1020 527 HOH HOH . N 4 HOH D 21 1021 543 HOH HOH . N 4 HOH D 22 1022 737 HOH HOH . N 4 HOH D 23 1023 687 HOH HOH . N 4 HOH D 24 1024 598 HOH HOH . N 4 HOH D 25 1025 669 HOH HOH . N 4 HOH D 26 1026 660 HOH HOH . N 4 HOH D 27 1027 717 HOH HOH . N 4 HOH D 28 1028 606 HOH HOH . N 4 HOH D 29 1029 631 HOH HOH . N 4 HOH D 30 1030 636 HOH HOH . N 4 HOH D 31 1031 561 HOH HOH . N 4 HOH D 32 1032 604 HOH HOH . N 4 HOH D 33 1033 559 HOH HOH . N 4 HOH D 34 1034 734 HOH HOH . N 4 HOH D 35 1035 521 HOH HOH . N 4 HOH D 36 1036 689 HOH HOH . N 4 HOH D 37 1037 614 HOH HOH . N 4 HOH D 38 1038 587 HOH HOH . N 4 HOH D 39 1039 728 HOH HOH . N 4 HOH D 40 1040 610 HOH HOH . N 4 HOH D 41 1041 618 HOH HOH . N 4 HOH D 42 1042 556 HOH HOH . N 4 HOH D 43 1043 640 HOH HOH . N 4 HOH D 44 1044 703 HOH HOH . N 4 HOH D 45 1045 740 HOH HOH . N 4 HOH D 46 1046 639 HOH HOH . N 4 HOH D 47 1047 603 HOH HOH . N 4 HOH D 48 1048 705 HOH HOH . N 4 HOH D 49 1049 602 HOH HOH . N 4 HOH D 50 1050 679 HOH HOH . N 4 HOH D 51 1051 723 HOH HOH . N 4 HOH D 52 1052 582 HOH HOH . N 4 HOH D 53 1053 590 HOH HOH . N 4 HOH D 54 1054 691 HOH HOH . N 4 HOH D 55 1055 672 HOH HOH . N 4 HOH D 56 1056 710 HOH HOH . N 4 HOH D 57 1057 607 HOH HOH . N 4 HOH D 58 1058 706 HOH HOH . N 4 HOH D 59 1059 729 HOH HOH . N 4 HOH D 60 1060 616 HOH HOH . N 4 HOH D 61 1061 565 HOH HOH . N 4 HOH D 62 1062 605 HOH HOH . N 4 HOH D 63 1063 663 HOH HOH . N 4 HOH D 64 1064 646 HOH HOH . N 4 HOH D 65 1065 709 HOH HOH . N 4 HOH D 66 1066 544 HOH HOH . N 4 HOH D 67 1067 730 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B4V . . . J 2 -59.766 -18.28 82.849 1 55.26 ? C1 B4V 900 D 1 HETATM 2 C C2 B4V . . . J 2 -59.514 -19.6 82.988 1 54.39 ? C2 B4V 900 D 1 HETATM 3 C C3 B4V . . . J 2 -58.095 -20.167 82.984 1 52.95 ? C3 B4V 900 D 1 HETATM 4 C C4 B4V . . . J 2 -57.071 -19.099 82.551 1 52.35 ? C4 B4V 900 D 1 HETATM 5 C C6 B4V . . . J 2 -58.722 -17.201 82.676 1 56.26 ? C6 B4V 900 D 1 HETATM 6 C C7 B4V . . . J 2 -66.339 -22.236 84.936 1 61.06 ? C7 B4V 900 D 1 HETATM 7 C C8 B4V . . . J 2 -67.599 -21.871 84.467 1 59.41 ? C8 B4V 900 D 1 HETATM 8 C C9 B4V . . . J 2 -67.749 -20.808 83.579 1 57.72 ? C9 B4V 900 D 1 HETATM 9 C C10 B4V . . . J 2 -66.646 -20.075 83.169 1 56.26 ? C10 B4V 900 D 1 HETATM 10 C C11 B4V . . . J 2 -65.375 -20.416 83.661 1 58.4 ? C11 B4V 900 D 1 HETATM 11 C C12 B4V . . . J 2 -65.232 -21.494 84.555 1 59.22 ? C12 B4V 900 D 1 HETATM 12 C C13 B4V . . . J 2 -64.173 -19.631 83.313 1 60.43 ? C13 B4V 900 D 1 HETATM 13 C C14 B4V . . . J 2 -66.154 -23.379 85.908 1 63.41 ? C14 B4V 900 D 1 HETATM 14 O O16 B4V . . . J 2 -64.263 -18.427 83.123 1 62.76 ? O16 B4V 900 D 1 HETATM 15 C C17 B4V . . . J 2 -61.753 -19.699 83.059 1 57.12 ? C17 B4V 900 D 1 HETATM 16 C C20 B4V . . . J 2 -68.581 -26.322 85.545 1 72.55 ? C20 B4V 900 D 1 HETATM 17 N N22 B4V . . . J 2 -66.82 -24.615 85.472 1 65.73 ? N22 B4V 900 D 1 HETATM 18 O O23 B4V . . . J 2 -68.503 -24.411 86.943 1 69.74 ? O23 B4V 900 D 1 HETATM 19 N N5 B4V . . . J 2 -57.358 -17.705 82.983 1 55.04 ? N5 B4V 900 D 1 HETATM 20 N N15 B4V . . . J 2 -62.99 -20.284 83.263 1 58.21 ? N15 B4V 900 D 1 HETATM 21 N N18 B4V . . . J 2 -60.617 -20.322 83.141 1 55.81 ? N18 B4V 900 D 1 HETATM 22 S S19 B4V . . . J 2 -61.492 -18.03 82.881 1 58.05 ? S19 B4V 900 D 1 HETATM 23 C C21 B4V . . . J 2 -67.972 -25.055 86.045 1 69.78 ? C21 B4V 900 D 1 HETATM 24 C C24 B4V . . . J 2 -69.799 -26.896 85.871 1 73.2 ? C24 B4V 900 D 1 HETATM 25 N N25 B4V . . . J 2 -69.911 -28.031 85.112 1 75.99 ? N25 B4V 900 D 1 HETATM 26 N N26 B4V . . . J 2 -68.731 -28.114 84.354 1 76 ? N26 B4V 900 D 1 HETATM 27 N N27 B4V . . . J 2 -67.994 -27.095 84.614 1 74.03 ? N27 B4V 900 D 1 HETATM 28 C C28 B4V . . . J 2 -70.813 -26.361 86.867 1 71.92 ? C28 B4V 900 D 1 HETATM 29 C C29 B4V . . . J 2 -70.943 -29.001 85.087 1 77.58 ? C29 B4V 900 D 1 HETATM 30 C C30 B4V . . . J 2 -71.001 -30.188 84.216 1 78.26 ? C30 B4V 900 D 1 HETATM 31 N N31 B4V . . . J 2 -72.073 -30.866 84.517 1 79.96 ? N31 B4V 900 D 1 HETATM 32 O O32 B4V . . . J 2 -72.743 -30.202 85.568 1 79.77 ? O32 B4V 900 D 1 HETATM 33 N N33 B4V . . . J 2 -71.971 -29.063 85.893 1 78.59 ? N33 B4V 900 D 1 HETATM 34 N N34 B4V . . . J 2 -70.111 -30.537 83.205 1 78.22 ? N34 B4V 900 D 1 HETATM 35 C C35 B4V . . . J 2 -57.021 -17.472 84.403 1 54.4 ? C35 B4V 900 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #