data_5WNI # _model_server_result.job_id 70bLdXhKdWb5o-Orrayu8g _model_server_result.datetime_utc '2024-12-05 00:47:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5WNI # _exptl.entry_id 5WNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WNI _cell.length_a 71.569 _cell.length_b 110.199 _cell.length_c 145.324 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WNI _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -72.662 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 148 A ASN 148 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc2 A OD2 ASP 161 A ASP 161 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 B MG MG . A MG 401 1_555 D O2A ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 B MG MG . A MG 401 1_555 D O1B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5WNI _atom_sites.fract_transf_matrix[1][1] 0.013973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 2 MG MG . C 3 CL A 1 402 3 CL CL . D 4 ATP A 1 403 1 ATP ATP . E 5 HOH A 1 501 47 HOH HOH . E 5 HOH A 2 502 17 HOH HOH . E 5 HOH A 3 503 27 HOH HOH . E 5 HOH A 4 504 61 HOH HOH . E 5 HOH A 5 505 34 HOH HOH . E 5 HOH A 6 506 33 HOH HOH . E 5 HOH A 7 507 35 HOH HOH . E 5 HOH A 8 508 14 HOH HOH . E 5 HOH A 9 509 32 HOH HOH . E 5 HOH A 10 510 60 HOH HOH . E 5 HOH A 11 511 23 HOH HOH . E 5 HOH A 12 512 57 HOH HOH . E 5 HOH A 13 513 19 HOH HOH . E 5 HOH A 14 514 48 HOH HOH . E 5 HOH A 15 515 45 HOH HOH . E 5 HOH A 16 516 11 HOH HOH . E 5 HOH A 17 517 31 HOH HOH . E 5 HOH A 18 518 20 HOH HOH . E 5 HOH A 19 519 44 HOH HOH . E 5 HOH A 20 520 5 HOH HOH . E 5 HOH A 21 521 10 HOH HOH . E 5 HOH A 22 522 3 HOH HOH . E 5 HOH A 23 523 56 HOH HOH . E 5 HOH A 24 524 21 HOH HOH . E 5 HOH A 25 525 26 HOH HOH . E 5 HOH A 26 526 25 HOH HOH . E 5 HOH A 27 527 54 HOH HOH . E 5 HOH A 28 528 52 HOH HOH . E 5 HOH A 29 529 24 HOH HOH . E 5 HOH A 30 530 42 HOH HOH . E 5 HOH A 31 531 63 HOH HOH . E 5 HOH A 32 532 2 HOH HOH . E 5 HOH A 33 533 53 HOH HOH . E 5 HOH A 34 534 13 HOH HOH . E 5 HOH A 35 535 22 HOH HOH . E 5 HOH A 36 536 12 HOH HOH . E 5 HOH A 37 537 18 HOH HOH . E 5 HOH A 38 538 16 HOH HOH . E 5 HOH A 39 539 9 HOH HOH . E 5 HOH A 40 540 28 HOH HOH . E 5 HOH A 41 541 8 HOH HOH . E 5 HOH A 42 542 40 HOH HOH . E 5 HOH A 43 543 7 HOH HOH . E 5 HOH A 44 544 41 HOH HOH . E 5 HOH A 45 545 4 HOH HOH . E 5 HOH A 46 546 46 HOH HOH . E 5 HOH A 47 547 15 HOH HOH . E 5 HOH A 48 548 49 HOH HOH . E 5 HOH A 49 549 58 HOH HOH . E 5 HOH A 50 550 55 HOH HOH . E 5 HOH A 51 551 43 HOH HOH . E 5 HOH A 52 552 1 HOH HOH . E 5 HOH A 53 553 6 HOH HOH . E 5 HOH A 54 554 51 HOH HOH . E 5 HOH A 55 555 38 HOH HOH . E 5 HOH A 56 556 37 HOH HOH . E 5 HOH A 57 557 59 HOH HOH . E 5 HOH A 58 558 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 -21.451 0.974 -15.152 1 141.67 ? PG ATP 403 A 1 HETATM 2 O O1G ATP . . . D 4 -22.582 0.892 -16.167 1 115.26 ? O1G ATP 403 A 1 HETATM 3 O O2G ATP . . . D 4 -21.757 0.208 -13.871 1 117.74 -1 O2G ATP 403 A 1 HETATM 4 O O3G ATP . . . D 4 -21.028 2.417 -14.883 1 116.75 -1 O3G ATP 403 A 1 HETATM 5 P PB ATP . . . D 4 -18.683 -0.275 -15.423 1 113.48 ? PB ATP 403 A 1 HETATM 6 O O1B ATP . . . D 4 -17.849 0.955 -15.172 1 98.45 ? O1B ATP 403 A 1 HETATM 7 O O2B ATP . . . D 4 -18.752 -1.362 -14.388 1 115.15 -1 O2B ATP 403 A 1 HETATM 8 O O3B ATP . . . D 4 -20.173 0.188 -15.836 1 129.35 ? O3B ATP 403 A 1 HETATM 9 P PA ATP . . . D 4 -17.23 -0.235 -17.932 1 95.61 ? PA ATP 403 A 1 HETATM 10 O O1A ATP . . . D 4 -17.487 -0.939 -19.223 1 111.12 -1 O1A ATP 403 A 1 HETATM 11 O O2A ATP . . . D 4 -17.478 1.239 -17.856 1 105.23 ? O2A ATP 403 A 1 HETATM 12 O O3A ATP . . . D 4 -18.116 -0.921 -16.779 1 110.91 ? O3A ATP 403 A 1 HETATM 13 O O5' ATP . . . D 4 -15.705 -0.464 -17.455 1 91 ? O5' ATP 403 A 1 HETATM 14 C C5' ATP . . . D 4 -15.128 -1.73 -17.077 1 74.35 ? C5' ATP 403 A 1 HETATM 15 C C4' ATP . . . D 4 -13.642 -1.761 -17.374 1 71.16 ? C4' ATP 403 A 1 HETATM 16 O O4' ATP . . . D 4 -13.376 -2.958 -18.155 1 74.52 ? O4' ATP 403 A 1 HETATM 17 C C3' ATP . . . D 4 -13.022 -0.614 -18.195 1 66.73 ? C3' ATP 403 A 1 HETATM 18 O O3' ATP . . . D 4 -12.472 0.431 -17.4 1 53.91 ? O3' ATP 403 A 1 HETATM 19 C C2' ATP . . . D 4 -11.914 -1.332 -18.975 1 66.73 ? C2' ATP 403 A 1 HETATM 20 O O2' ATP . . . D 4 -10.727 -1.536 -18.235 1 63.83 ? O2' ATP 403 A 1 HETATM 21 C C1' ATP . . . D 4 -12.584 -2.668 -19.284 1 67.87 ? C1' ATP 403 A 1 HETATM 22 N N9 ATP . . . D 4 -13.447 -2.697 -20.488 1 64.98 ? N9 ATP 403 A 1 HETATM 23 C C8 ATP . . . D 4 -14.731 -2.203 -20.618 1 63.27 ? C8 ATP 403 A 1 HETATM 24 N N7 ATP . . . D 4 -15.219 -2.376 -21.825 1 65.1 ? N7 ATP 403 A 1 HETATM 25 C C5 ATP . . . D 4 -14.204 -3.019 -22.528 1 63.39 ? C5 ATP 403 A 1 HETATM 26 C C6 ATP . . . D 4 -14.102 -3.471 -23.861 1 62.15 ? C6 ATP 403 A 1 HETATM 27 N N6 ATP . . . D 4 -15.07 -3.334 -24.762 1 55.57 ? N6 ATP 403 A 1 HETATM 28 N N1 ATP . . . D 4 -12.936 -4.063 -24.236 1 63.45 ? N1 ATP 403 A 1 HETATM 29 C C2 ATP . . . D 4 -11.96 -4.203 -23.324 1 59.92 ? C2 ATP 403 A 1 HETATM 30 N N3 ATP . . . D 4 -11.942 -3.811 -22.05 1 63 ? N3 ATP 403 A 1 HETATM 31 C C4 ATP . . . D 4 -13.107 -3.22 -21.711 1 63.04 ? C4 ATP 403 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #