data_5WNJ
#
_model_server_result.job_id            LE1H2Cc94GTNQsxGHuB-4Q 
_model_server_result.datetime_utc      '2024-11-22 08:50:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wnj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5WNJ 
#
_exptl.entry_id    5WNJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              439.463 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Lestaurtinib 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WNJ 
_cell.length_a            70.825 
_cell.length_b            110.247 
_cell.length_c            145.536 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WNJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -72.768 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H21 N3 O4' 
_chem_comp.formula_weight    439.463 
_chem_comp.id                2V9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Lestaurtinib 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (5S,6S,8R)-6-hydroxy-6-(hydroxymethyl)-5-methyl-5,6,7,8-tetrahydro-13H-5,8-epoxy-4b,8a,14-triazadibenzo[b,h]cycloocta[1,2,3,4-jkl]cyclopenta[e]-as-indacen-13-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 2V9 sing 1 n y 
C8 C7 2V9 doub 2 n y 
C9 C10 2V9 doub 3 n y 
C7 C6 2V9 sing 4 n y 
C10 C11 2V9 sing 5 n y 
C6 C11 2V9 doub 6 n y 
C6 N1 2V9 sing 7 n y 
C4 C5 2V9 sing 8 n n 
C4 C3 2V9 sing 9 n n 
C11 C12 2V9 sing 10 n y 
C5 N1 2V9 sing 11 n n 
C5 O1 2V9 sing 12 n n 
N1 C23 2V9 sing 13 n y 
O3 C26 2V9 sing 14 n n 
C26 C3 2V9 sing 15 n n 
C3 O4 2V9 sing 16 n n 
C3 C2 2V9 sing 17 n n 
C12 C23 2V9 sing 18 n y 
C12 C13 2V9 doub 19 n y 
C23 C22 2V9 doub 20 n y 
O1 C2 2V9 sing 21 n n 
O2 C25 2V9 doub 22 n n 
C2 N2 2V9 sing 23 n n 
C2 C1 2V9 sing 24 n n 
C13 C25 2V9 sing 25 n n 
C13 C14 2V9 sing 26 n y 
C22 N2 2V9 sing 27 n y 
C22 C15 2V9 sing 28 n y 
C25 N3 2V9 sing 29 n n 
N2 C21 2V9 sing 30 n y 
C14 C15 2V9 doub 31 n y 
C14 C24 2V9 sing 32 n n 
C15 C16 2V9 sing 33 n y 
N3 C24 2V9 sing 34 n n 
C21 C16 2V9 doub 35 n y 
C21 C20 2V9 sing 36 n y 
C16 C17 2V9 sing 37 n y 
C20 C19 2V9 doub 38 n y 
C17 C18 2V9 doub 39 n y 
C19 C18 2V9 sing 40 n y 
C24 H1 2V9 sing 41 n n 
C10 H2 2V9 sing 42 n n 
C9 H3 2V9 sing 43 n n 
C8 H4 2V9 sing 44 n n 
C7 H5 2V9 sing 45 n n 
C17 H6 2V9 sing 46 n n 
C18 H7 2V9 sing 47 n n 
C19 H8 2V9 sing 48 n n 
C20 H9 2V9 sing 49 n n 
C1 H10 2V9 sing 50 n n 
C1 H11 2V9 sing 51 n n 
C1 H12 2V9 sing 52 n n 
C5 H13 2V9 sing 53 n n 
C4 H14 2V9 sing 54 n n 
C4 H15 2V9 sing 55 n n 
O4 H16 2V9 sing 56 n n 
C26 H17 2V9 sing 57 n n 
C26 H18 2V9 sing 58 n n 
O3 H19 2V9 sing 59 n n 
N3 H20 2V9 sing 60 n n 
C24 H21 2V9 sing 61 n n 
#
_atom_sites.entry_id                     5WNJ 
_atom_sites.fract_transf_matrix[1][1]    0.014119 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009071 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 2V9 A 1 401 1 2V9 2V9 . 
C 3 CL A 1 402 1 CL CL . 
D 4 HOH A 1 501 302 HOH HOH . 
D 4 HOH A 2 502 325 HOH HOH . 
D 4 HOH A 3 503 314 HOH HOH . 
D 4 HOH A 4 504 305 HOH HOH . 
D 4 HOH A 5 505 324 HOH HOH . 
D 4 HOH A 6 506 316 HOH HOH . 
D 4 HOH A 7 507 317 HOH HOH . 
D 4 HOH A 8 508 310 HOH HOH . 
D 4 HOH A 9 509 319 HOH HOH . 
D 4 HOH A 10 510 320 HOH HOH . 
D 4 HOH A 11 511 311 HOH HOH . 
D 4 HOH A 12 512 322 HOH HOH . 
D 4 HOH A 13 513 315 HOH HOH . 
D 4 HOH A 14 514 318 HOH HOH . 
D 4 HOH A 15 515 312 HOH HOH . 
D 4 HOH A 16 516 304 HOH HOH . 
D 4 HOH A 17 517 321 HOH HOH . 
D 4 HOH A 18 518 308 HOH HOH . 
D 4 HOH A 19 519 309 HOH HOH . 
D 4 HOH A 20 520 326 HOH HOH . 
D 4 HOH A 21 521 323 HOH HOH . 
D 4 HOH A 22 522 327 HOH HOH . 
D 4 HOH A 23 523 301 HOH HOH . 
D 4 HOH A 24 524 313 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 2V9 . . . B 2 -13.07 -4.561 -24.538 1 50.83 ? O2 2V9 401 A 1 
HETATM 2 C C25 2V9 . . . B 2 -13.919 -3.935 -23.886 1 49.47 ? C25 2V9 401 A 1 
HETATM 3 N N3 2V9 . . . B 2 -15.064 -3.445 -24.396 1 47.45 ? N3 2V9 401 A 1 
HETATM 4 C C24 2V9 . . . B 2 -15.862 -3.006 -23.404 1 46.65 ? C24 2V9 401 A 1 
HETATM 5 C C14 2V9 . . . B 2 -15.055 -2.887 -22.197 1 50.74 ? C14 2V9 401 A 1 
HETATM 6 C C13 2V9 . . . B 2 -13.844 -3.535 -22.483 1 50.27 ? C13 2V9 401 A 1 
HETATM 7 C C12 2V9 . . . B 2 -12.816 -3.576 -21.505 1 48.46 ? C12 2V9 401 A 1 
HETATM 8 C C11 2V9 . . . B 2 -11.473 -4.087 -21.478 1 45.59 ? C11 2V9 401 A 1 
HETATM 9 C C10 2V9 . . . B 2 -10.669 -4.761 -22.408 1 48.59 ? C10 2V9 401 A 1 
HETATM 10 C C9 2V9 . . . B 2 -9.38 -5.103 -22.055 1 49.8 ? C9 2V9 401 A 1 
HETATM 11 C C8 2V9 . . . B 2 -8.884 -4.797 -20.783 1 48.14 ? C8 2V9 401 A 1 
HETATM 12 C C7 2V9 . . . B 2 -9.655 -4.144 -19.846 1 49.4 ? C7 2V9 401 A 1 
HETATM 13 C C6 2V9 . . . B 2 -10.955 -3.79 -20.198 1 48.04 ? C6 2V9 401 A 1 
HETATM 14 N N1 2V9 . . . B 2 -11.944 -3.146 -19.46 1 53.01 ? N1 2V9 401 A 1 
HETATM 15 C C23 2V9 . . . B 2 -13.067 -3.01 -20.238 1 50.07 ? C23 2V9 401 A 1 
HETATM 16 C C22 2V9 . . . B 2 -14.301 -2.403 -19.921 1 47.96 ? C22 2V9 401 A 1 
HETATM 17 C C15 2V9 . . . B 2 -15.304 -2.343 -20.906 1 49.28 ? C15 2V9 401 A 1 
HETATM 18 C C16 2V9 . . . B 2 -16.425 -1.68 -20.325 1 48.25 ? C16 2V9 401 A 1 
HETATM 19 C C17 2V9 . . . B 2 -17.685 -1.316 -20.818 1 50.55 ? C17 2V9 401 A 1 
HETATM 20 C C18 2V9 . . . B 2 -18.566 -0.656 -19.989 1 52.15 ? C18 2V9 401 A 1 
HETATM 21 C C19 2V9 . . . B 2 -18.207 -0.342 -18.677 1 51.57 ? C19 2V9 401 A 1 
HETATM 22 C C20 2V9 . . . B 2 -16.98 -0.701 -18.16 1 51.28 ? C20 2V9 401 A 1 
HETATM 23 C C21 2V9 . . . B 2 -16.075 -1.363 -18.992 1 50.25 ? C21 2V9 401 A 1 
HETATM 24 N N2 2V9 . . . B 2 -14.771 -1.817 -18.754 1 50.83 ? N2 2V9 401 A 1 
HETATM 25 C C2 2V9 . . . B 2 -14.009 -1.775 -17.481 1 55.59 ? C2 2V9 401 A 1 
HETATM 26 C C1 2V9 . . . B 2 -14.917 -1.995 -16.271 1 55.21 ? C1 2V9 401 A 1 
HETATM 27 O O1 2V9 . . . B 2 -13.095 -2.888 -17.463 1 54.87 ? O1 2V9 401 A 1 
HETATM 28 C C5 2V9 . . . B 2 -11.88 -2.576 -18.119 1 53.64 ? C5 2V9 401 A 1 
HETATM 29 C C4 2V9 . . . B 2 -11.804 -1.052 -18.129 1 56.89 ? C4 2V9 401 A 1 
HETATM 30 C C3 2V9 . . . B 2 -13.043 -0.576 -17.352 1 60.14 ? C3 2V9 401 A 1 
HETATM 31 O O4 2V9 . . . B 2 -13.64 0.544 -18.024 1 59.5 ? O4 2V9 401 A 1 
HETATM 32 C C26 2V9 . . . B 2 -12.721 -0.18 -15.918 1 65.07 ? C26 2V9 401 A 1 
HETATM 33 O O3 2V9 . . . B 2 -11.646 0.744 -15.878 1 77.59 ? O3 2V9 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#