data_5WNK # _model_server_result.job_id Pt_f-U3rCls6YY8K-BEqug _model_server_result.datetime_utc '2024-10-14 06:16:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5WNK # _exptl.entry_id 5WNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.343 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3'-(2,4-diaminopteridine-6,7-diyl)diphenol" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WNK _cell.length_a 69.769 _cell.length_b 110.231 _cell.length_c 146.277 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H14 N6 O2' _chem_comp.formula_weight 346.343 _chem_comp.id B6J _chem_comp.mon_nstd_flag . _chem_comp.name "3,3'-(2,4-diaminopteridine-6,7-diyl)diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N19 C14 B6J sing 70 n n N15 C14 B6J doub 71 n y N15 C16 B6J sing 72 n y C14 C12 B6J sing 73 n y N18 C16 B6J sing 74 n n C16 N17 B6J doub 75 n y O7 C5 B6J sing 76 n n C12 N13 B6J sing 77 n y C12 C11 B6J doub 78 n y N13 C8 B6J doub 79 n y N17 C11 B6J sing 80 n y C4 C5 B6J doub 81 n y C4 C3 B6J sing 82 n y C5 C6 B6J sing 83 n y C11 N10 B6J sing 84 n y C8 C3 B6J sing 85 n n C8 C9 B6J sing 86 n y C3 C2 B6J doub 87 n y N10 C9 B6J doub 88 n y C6 C1 B6J doub 89 n y C9 C20 B6J sing 90 n n C2 C1 B6J sing 91 n y C20 C21 B6J doub 92 n y C20 C25 B6J sing 93 n y C21 C22 B6J sing 94 n y C22 C23 B6J doub 95 n y C25 C24 B6J doub 96 n y C23 C24 B6J sing 97 n y C24 O26 B6J sing 98 n n C4 H1 B6J sing 99 n n C6 H2 B6J sing 100 n n C1 H3 B6J sing 101 n n C2 H4 B6J sing 102 n n O7 H5 B6J sing 103 n n N18 H6 B6J sing 104 n n N18 H7 B6J sing 105 n n N19 H8 B6J sing 106 n n N19 H9 B6J sing 107 n n C21 H10 B6J sing 108 n n C22 H11 B6J sing 109 n n C23 H12 B6J sing 110 n n C25 H13 B6J sing 111 n n O26 H14 B6J sing 112 n n # _atom_sites.entry_id 5WNK _atom_sites.fract_transf_matrix[1][1] 0.014333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 1 CL CL . C 3 B6J A 1 402 1 B6J DRG . D 4 HOH A 1 501 2 HOH HOH . D 4 HOH A 2 502 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B6J . . . C 3 -17.801 -0.716 -21.828 1 86.02 ? C4 B6J 402 A 1 HETATM 2 C C14 B6J . . . C 3 -13.925 -3.667 -23.739 1 77.8 ? C14 B6J 402 A 1 HETATM 3 C C5 B6J . . . C 3 -19.126 -0.309 -21.579 1 90.33 ? C5 B6J 402 A 1 HETATM 4 C C6 B6J . . . C 3 -19.697 -0.501 -20.313 1 89.03 ? C6 B6J 402 A 1 HETATM 5 C C11 B6J . . . C 3 -13.136 -2.841 -21.532 1 82.14 ? C11 B6J 402 A 1 HETATM 6 C C8 B6J . . . C 3 -15.635 -1.803 -21.018 1 80.46 ? C8 B6J 402 A 1 HETATM 7 C C9 B6J . . . C 3 -14.558 -1.686 -20.066 1 79.53 ? C9 B6J 402 A 1 HETATM 8 C C12 B6J . . . C 3 -14.211 -2.966 -22.47 1 79.03 ? C12 B6J 402 A 1 HETATM 9 C C3 B6J . . . C 3 -17.034 -1.309 -20.802 1 84.38 ? C3 B6J 402 A 1 HETATM 10 C C1 B6J . . . C 3 -18.953 -1.09 -19.301 1 86.93 ? C1 B6J 402 A 1 HETATM 11 C C2 B6J . . . C 3 -17.654 -1.509 -19.551 1 87.61 ? C2 B6J 402 A 1 HETATM 12 O O7 B6J . . . C 3 -19.879 0.284 -22.556 1 89.38 ? O7 B6J 402 A 1 HETATM 13 N N10 B6J . . . C 3 -13.363 -2.2 -20.364 1 78.67 ? N10 B6J 402 A 1 HETATM 14 N N13 B6J . . . C 3 -15.409 -2.449 -22.169 1 77.84 ? N13 B6J 402 A 1 HETATM 15 N N15 B6J . . . C 3 -12.693 -4.14 -23.949 1 75.98 ? N15 B6J 402 A 1 HETATM 16 C C16 B6J . . . C 3 -11.74 -4.003 -23.028 1 78.68 ? C16 B6J 402 A 1 HETATM 17 N N17 B6J . . . C 3 -11.931 -3.376 -21.866 1 82.49 ? N17 B6J 402 A 1 HETATM 18 N N18 B6J . . . C 3 -10.497 -4.537 -23.303 1 77.96 ? N18 B6J 402 A 1 HETATM 19 N N19 B6J . . . C 3 -14.887 -3.799 -24.712 1 79.91 ? N19 B6J 402 A 1 HETATM 20 C C20 B6J . . . C 3 -14.655 -0.973 -18.763 1 86.92 ? C20 B6J 402 A 1 HETATM 21 C C21 B6J . . . C 3 -15.003 0.4 -18.756 1 94.34 ? C21 B6J 402 A 1 HETATM 22 C C22 B6J . . . C 3 -15.098 1.135 -17.574 1 92.02 ? C22 B6J 402 A 1 HETATM 23 C C23 B6J . . . C 3 -14.814 0.501 -16.37 1 97.54 ? C23 B6J 402 A 1 HETATM 24 C C24 B6J . . . C 3 -14.448 -0.857 -16.355 1 103.17 ? C24 B6J 402 A 1 HETATM 25 C C25 B6J . . . C 3 -14.356 -1.596 -17.543 1 94.87 ? C25 B6J 402 A 1 HETATM 26 O O26 B6J . . . C 3 -14.177 -1.466 -15.167 1 114.02 ? O26 B6J 402 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #