data_5WNM
#
_model_server_result.job_id            9Kobb7TRDVSt6w6Woo0Uvg 
_model_server_result.datetime_utc      '2024-12-12 13:42:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wnm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5WNM 
#
_exptl.entry_id    5WNM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              464.586 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WNM 
_cell.length_a            70.82 
_cell.length_b            109.612 
_cell.length_c            146.09 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WNM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -73.045 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H28 N8 O S' 
_chem_comp.formula_weight    464.586 
_chem_comp.id                VX6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 VX6 sing 376 n n 
N1 C6 VX6 sing 377 n n 
N1 C7 VX6 sing 378 n n 
C2 C3 VX6 sing 379 n n 
C2 H21 VX6 sing 380 n n 
C2 H22 VX6 sing 381 n n 
C3 N4 VX6 sing 382 n n 
C3 H31 VX6 sing 383 n n 
C3 H32 VX6 sing 384 n n 
N4 C5 VX6 sing 385 n n 
N4 C8 VX6 sing 386 n n 
C5 C6 VX6 sing 387 n n 
C5 H51 VX6 sing 388 n n 
C5 H52 VX6 sing 389 n n 
C6 H61 VX6 sing 390 n n 
C6 H62 VX6 sing 391 n n 
C7 H71 VX6 sing 392 n n 
C7 H72 VX6 sing 393 n n 
C7 H73 VX6 sing 394 n n 
C8 C9 VX6 sing 395 n y 
C8 N13 VX6 doub 396 n y 
C9 C10 VX6 doub 397 n y 
C9 H9 VX6 sing 398 n n 
C10 N11 VX6 sing 399 n y 
C10 N14 VX6 sing 400 n n 
N11 C12 VX6 doub 401 n y 
C12 N13 VX6 sing 402 n y 
C12 S23 VX6 sing 403 n n 
N14 C15 VX6 sing 404 n n 
N14 H14 VX6 sing 405 n n 
C15 C17 VX6 doub 406 n y 
C15 N20 VX6 sing 407 n y 
C17 C18 VX6 sing 408 n y 
C17 H17 VX6 sing 409 n n 
C18 N19 VX6 doub 410 n y 
C18 C21 VX6 sing 411 n n 
N19 N20 VX6 sing 412 n y 
N20 H20 VX6 sing 413 n n 
C21 H211 VX6 sing 414 n n 
C21 H212 VX6 sing 415 n n 
C21 H213 VX6 sing 416 n n 
S23 C24 VX6 sing 417 n n 
C24 C25 VX6 sing 418 n y 
C24 C29 VX6 doub 419 n y 
C25 C26 VX6 doub 420 n y 
C25 H25 VX6 sing 421 n n 
C26 C27 VX6 sing 422 n y 
C26 H26 VX6 sing 423 n n 
C27 C28 VX6 doub 424 n y 
C27 N30 VX6 sing 425 n n 
C28 C29 VX6 sing 426 n y 
C28 H28 VX6 sing 427 n n 
C29 H29 VX6 sing 428 n n 
N30 C31 VX6 sing 429 n n 
N30 H30 VX6 sing 430 n n 
C31 O32 VX6 doub 431 n n 
C31 C33 VX6 sing 432 n n 
C33 C34 VX6 sing 433 n n 
C33 C35 VX6 sing 434 n n 
C33 H33 VX6 sing 435 n n 
C34 C35 VX6 sing 436 n n 
C34 H341 VX6 sing 437 n n 
C34 H342 VX6 sing 438 n n 
C35 H351 VX6 sing 439 n n 
C35 H352 VX6 sing 440 n n 
#
_atom_sites.entry_id                     5WNM 
_atom_sites.fract_transf_matrix[1][1]    0.01412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 401 1 CL CL . 
C 3 VX6 A 1 402 1 VX6 VX6 . 
D 4 HOH A 1 501 20 HOH HOH . 
D 4 HOH A 2 502 14 HOH HOH . 
D 4 HOH A 3 503 13 HOH HOH . 
D 4 HOH A 4 504 21 HOH HOH . 
D 4 HOH A 5 505 12 HOH HOH . 
D 4 HOH A 6 506 1 HOH HOH . 
D 4 HOH A 7 507 11 HOH HOH . 
D 4 HOH A 8 508 17 HOH HOH . 
D 4 HOH A 9 509 8 HOH HOH . 
D 4 HOH A 10 510 6 HOH HOH . 
D 4 HOH A 11 511 19 HOH HOH . 
D 4 HOH A 12 512 25 HOH HOH . 
D 4 HOH A 13 513 5 HOH HOH . 
D 4 HOH A 14 514 7 HOH HOH . 
D 4 HOH A 15 515 18 HOH HOH . 
D 4 HOH A 16 516 4 HOH HOH . 
D 4 HOH A 17 517 10 HOH HOH . 
D 4 HOH A 18 518 30 HOH HOH . 
D 4 HOH A 19 519 16 HOH HOH . 
D 4 HOH A 20 520 15 HOH HOH . 
D 4 HOH A 21 521 24 HOH HOH . 
D 4 HOH A 22 522 22 HOH HOH . 
D 4 HOH A 23 523 29 HOH HOH . 
D 4 HOH A 24 524 23 HOH HOH . 
D 4 HOH A 25 525 28 HOH HOH . 
D 4 HOH A 26 526 26 HOH HOH . 
D 4 HOH A 27 527 27 HOH HOH . 
D 4 HOH A 28 528 9 HOH HOH . 
D 4 HOH A 29 529 2 HOH HOH . 
D 4 HOH A 30 530 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 VX6 . . . C 3 -4.931 -6.381 -21.174 1 76.26 ? N1 VX6 402 A 1 
HETATM 2 C C2 VX6 . . . C 3 -5.805 -6.718 -22.299 1 73.71 ? C2 VX6 402 A 1 
HETATM 3 C C3 VX6 . . . C 3 -6.854 -5.647 -22.511 1 70.96 ? C3 VX6 402 A 1 
HETATM 4 N N4 VX6 . . . C 3 -7.638 -5.409 -21.294 1 69.28 ? N4 VX6 402 A 1 
HETATM 5 C C5 VX6 . . . C 3 -6.793 -5.18 -20.116 1 70.89 ? C5 VX6 402 A 1 
HETATM 6 C C6 VX6 . . . C 3 -5.748 -6.266 -19.964 1 73.82 ? C6 VX6 402 A 1 
HETATM 7 C C7 VX6 . . . C 3 -3.864 -7.373 -21.011 1 76.33 ? C7 VX6 402 A 1 
HETATM 8 C C8 VX6 . . . C 3 -8.894 -4.8 -21.374 1 62.41 ? C8 VX6 402 A 1 
HETATM 9 C C9 VX6 . . . C 3 -9.732 -4.931 -22.5 1 58.77 ? C9 VX6 402 A 1 
HETATM 10 C C10 VX6 . . . C 3 -10.974 -4.298 -22.462 1 58.7 ? C10 VX6 402 A 1 
HETATM 11 N N11 VX6 . . . C 3 -11.361 -3.587 -21.392 1 58.65 ? N11 VX6 402 A 1 
HETATM 12 C C12 VX6 . . . C 3 -10.516 -3.517 -20.36 1 62.47 ? C12 VX6 402 A 1 
HETATM 13 N N13 VX6 . . . C 3 -9.309 -4.084 -20.308 1 58.76 ? N13 VX6 402 A 1 
HETATM 14 N N14 VX6 . . . C 3 -11.844 -4.385 -23.559 1 58.35 ? N14 VX6 402 A 1 
HETATM 15 C C15 VX6 . . . C 3 -13.183 -3.994 -23.688 1 59.99 ? C15 VX6 402 A 1 
HETATM 16 C C17 VX6 . . . C 3 -14.096 -3.645 -22.715 1 59.41 ? C17 VX6 402 A 1 
HETATM 17 C C18 VX6 . . . C 3 -15.292 -3.349 -23.392 1 59.25 ? C18 VX6 402 A 1 
HETATM 18 N N19 VX6 . . . C 3 -15.118 -3.507 -24.702 1 58.81 ? N19 VX6 402 A 1 
HETATM 19 N N20 VX6 . . . C 3 -13.828 -3.905 -24.868 1 58.54 ? N20 VX6 402 A 1 
HETATM 20 C C21 VX6 . . . C 3 -16.609 -2.913 -22.838 1 60.24 ? C21 VX6 402 A 1 
HETATM 21 S S23 VX6 . . . C 3 -11.038 -2.588 -18.944 1 65.78 ? S23 VX6 402 A 1 
HETATM 22 C C24 VX6 . . . C 3 -12.671 -1.987 -19.308 1 61.3 ? C24 VX6 402 A 1 
HETATM 23 C C25 VX6 . . . C 3 -13.814 -2.693 -18.949 1 62.39 ? C25 VX6 402 A 1 
HETATM 24 C C26 VX6 . . . C 3 -15.069 -2.204 -19.268 1 63.03 ? C26 VX6 402 A 1 
HETATM 25 C C27 VX6 . . . C 3 -15.206 -0.995 -19.945 1 65.81 ? C27 VX6 402 A 1 
HETATM 26 C C28 VX6 . . . C 3 -14.062 -0.289 -20.298 1 66.61 ? C28 VX6 402 A 1 
HETATM 27 C C29 VX6 . . . C 3 -12.807 -0.781 -19.983 1 64.31 ? C29 VX6 402 A 1 
HETATM 28 N N30 VX6 . . . C 3 -16.468 -0.439 -20.305 1 67.87 ? N30 VX6 402 A 1 
HETATM 29 C C31 VX6 . . . C 3 -17.696 -0.884 -19.924 1 74.68 ? C31 VX6 402 A 1 
HETATM 30 O O32 VX6 . . . C 3 -17.925 -1.361 -18.819 1 80.88 ? O32 VX6 402 A 1 
HETATM 31 C C33 VX6 . . . C 3 -18.743 -0.718 -20.942 1 77.59 ? C33 VX6 402 A 1 
HETATM 32 C C34 VX6 . . . C 3 -19.953 0.101 -20.58 1 77.23 ? C34 VX6 402 A 1 
HETATM 33 C C35 VX6 . . . C 3 -20.075 -1.361 -20.668 1 79.43 ? C35 VX6 402 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#