data_5WO7 # _model_server_result.job_id RpWqRknRtKkc44XDITduXg _model_server_result.datetime_utc '2024-11-21 13:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wo7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5WO7 # _exptl.entry_id 5WO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.262 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WO7 _cell.length_a 146.026 _cell.length_b 146.026 _cell.length_c 116.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 541 A ASP 541 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc2 A OD1 ASP 541 A ASP 541 1_555 C CA CA . A CA 702 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'C10 H18 N2 O3' _chem_comp.formula_weight 214.262 _chem_comp.id DTB _chem_comp.mon_nstd_flag . _chem_comp.name '6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms D-DESTHIOBIOTIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CN O DTB doub 83 n n CN N2 DTB sing 84 n n CN N1 DTB sing 85 n n N2 CR DTB sing 86 n n N2 HN2 DTB sing 87 n n CR CS DTB sing 88 n n CR CE DTB sing 89 n n CR HCR DTB sing 90 n n CS N1 DTB sing 91 n n CS CT DTB sing 92 n n CS HCS DTB sing 93 n n N1 HN1 DTB sing 94 n n CT HCT1 DTB sing 95 n n CT HCT2 DTB sing 96 n n CT HCT3 DTB sing 97 n n CE CD DTB sing 98 n n CE HCE1 DTB sing 99 n n CE HCE2 DTB sing 100 n n CD CG DTB sing 101 n n CD HCD1 DTB sing 102 n n CD HCD2 DTB sing 103 n n CG CB DTB sing 104 n n CG HCG1 DTB sing 105 n n CG HCG2 DTB sing 106 n n CB CA DTB sing 107 n n CB HCB1 DTB sing 108 n n CB HCB2 DTB sing 109 n n CA C DTB sing 110 n n CA HCA1 DTB sing 111 n n CA HCA2 DTB sing 112 n n C OI1 DTB doub 113 n n C OI2 DTB sing 114 n n OI2 HOI2 DTB sing 115 n n # _atom_sites.entry_id 5WO7 _atom_sites.fract_transf_matrix[1][1] 0.006848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTB A 1 701 702 DTB DTB . C 3 CA A 1 702 1 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CN DTB . . . B 2 40.727 -52.762 35.065 1 113.92 ? CN DTB 701 A 1 HETATM 2 O O DTB . . . B 2 41.502 -52.37 35.933 1 98.86 ? O DTB 701 A 1 HETATM 3 N N2 DTB . . . B 2 39.751 -52.072 34.469 1 122.53 ? N2 DTB 701 A 1 HETATM 4 C CR DTB . . . B 2 39.017 -52.84 33.464 1 112.69 ? CR DTB 701 A 1 HETATM 5 C CS DTB . . . B 2 39.652 -54.218 33.599 1 111.18 ? CS DTB 701 A 1 HETATM 6 N N1 DTB . . . B 2 40.71 -53.984 34.561 1 112.34 ? N1 DTB 701 A 1 HETATM 7 C CT DTB . . . B 2 38.728 -55.311 34.105 1 108.13 ? CT DTB 701 A 1 HETATM 8 C CE DTB . . . B 2 37.509 -52.767 33.654 1 105.76 ? CE DTB 701 A 1 HETATM 9 C CD DTB . . . B 2 36.754 -53.492 32.537 1 95.84 ? CD DTB 701 A 1 HETATM 10 C CG DTB . . . B 2 35.476 -52.765 32.15 1 92.79 ? CG DTB 701 A 1 HETATM 11 C CB DTB . . . B 2 35.181 -52.771 30.656 1 94.59 ? CB DTB 701 A 1 HETATM 12 C CA DTB . . . B 2 33.884 -52.009 30.413 1 95.89 ? CA DTB 701 A 1 HETATM 13 C C DTB . . . B 2 33.514 -52.048 28.952 1 101.31 ? C DTB 701 A 1 HETATM 14 O OI1 DTB . . . B 2 33.513 -50.971 28.348 1 103.27 ? OI1 DTB 701 A 1 HETATM 15 O OI2 DTB . . . B 2 33.219 -53.122 28.386 1 108.25 ? OI2 DTB 701 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1157 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #