data_5WOB # _model_server_result.job_id LZe_cWrDjJS0POUULLf6Cg _model_server_result.datetime_utc '2024-10-22 21:49:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":2001}' # _entry.id 5WOB # _exptl.entry_id 5WOB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.36 _cell.angle_gamma 90 _cell.entry_id 5WOB _cell.length_a 121.589 _cell.length_b 138.19 _cell.length_c 376.509 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octameric 8 author_defined_assembly 1 ? octameric 8 author_defined_assembly 2 ? octameric 8 author_defined_assembly 3 ? octameric 8 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q,R,Y,Z,GA,HA 1 1 C,D,K,L,S,T,AA,BA,IA,JA 2 1 E,F,M,N,U,V,CA,DA,KA,LA 3 1 G,H,O,P,W,X,EA,FA,MA,NA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 GA N N ? 5 HA N N ? 5 IA N N ? 5 JA N N ? 5 KA N N ? 5 LA N N ? 5 MA N N ? 5 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 6 a CYS 6 1_555 I SG CYS 11 a CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 K SG CYS 6 c CYS 6 1_555 K SG CYS 11 c CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 N SG CYS 6 f CYS 6 1_555 N SG CYS 11 f CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 Q SG CYS 48 I CYS 22 1_555 Q SG CYS 122 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 Q SG CYS 182 I CYS 156 1_555 Q SG CYS 238 I CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 R SG CYS 48 K CYS 22 1_555 R SG CYS 122 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 R SG CYS 182 K CYS 156 1_555 R SG CYS 238 K CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 S SG CYS 48 M CYS 22 1_555 S SG CYS 122 M CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 S SG CYS 182 M CYS 156 1_555 S SG CYS 238 M CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 T SG CYS 48 O CYS 22 1_555 T SG CYS 122 O CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 U SG CYS 48 Q CYS 22 1_555 U SG CYS 122 Q CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 U SG CYS 182 Q CYS 156 1_555 U SG CYS 238 Q CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 V SG CYS 48 S CYS 22 1_555 V SG CYS 122 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 V SG CYS 182 S CYS 156 1_555 V SG CYS 238 S CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 W SG CYS 48 U CYS 22 1_555 W SG CYS 122 U CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 W SG CYS 182 U CYS 156 1_555 W SG CYS 238 U CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 X SG CYS 48 W CYS 22 1_555 X SG CYS 122 W CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 Y SG CYS 47 J CYS 23 1_555 Y SG CYS 112 J CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 Y SG CYS 159 J CYS 135 1_555 Y SG CYS 219 J CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 Z SG CYS 47 L CYS 23 1_555 Z SG CYS 112 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf21 AA SG CYS 47 N CYS 23 1_555 AA SG CYS 112 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 AA SG CYS 159 N CYS 135 1_555 AA SG CYS 219 N CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 BA SG CYS 47 P CYS 23 1_555 BA SG CYS 112 P CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf24 BA SG CYS 159 P CYS 135 1_555 BA SG CYS 219 P CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf25 CA SG CYS 47 R CYS 23 1_555 CA SG CYS 112 R CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf26 DA SG CYS 47 T CYS 23 1_555 DA SG CYS 112 T CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf27 DA SG CYS 159 T CYS 135 1_555 DA SG CYS 219 T CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf28 EA SG CYS 47 V CYS 23 1_555 EA SG CYS 112 V CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf29 FA SG CYS 47 X CYS 23 1_555 FA SG CYS 112 X CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 FA SG CYS 159 X CYS 135 1_555 FA SG CYS 219 X CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A NE2 HIS 83 A HIS 112 1_555 GA ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc2 B NE2 HIS 79 B HIS 108 1_555 HA ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 B NE2 HIS 83 B HIS 112 1_555 HA ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc4 C NE2 HIS 83 C HIS 112 1_555 IA ZN ZN . C ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc5 D NE2 HIS 79 D HIS 108 1_555 JA ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc6 D OE1 GLU 160 D GLU 189 1_555 JA ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc7 E NE2 HIS 83 E HIS 112 1_555 KA ZN ZN . E ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc8 E OE1 GLU 160 E GLU 189 1_555 KA ZN ZN . E ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc9 F NE2 HIS 79 F HIS 108 1_555 LA ZN ZN . F ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc10 F NE2 HIS 83 F HIS 112 1_555 LA ZN ZN . F ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc11 G NE2 HIS 79 G HIS 108 1_555 MA ZN ZN . G ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc12 H NE2 HIS 79 H HIS 108 1_555 NA ZN ZN . H ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc13 H NE2 HIS 83 H HIS 112 1_555 NA ZN ZN . H ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc14 H OE1 GLU 160 H GLU 189 1_555 NA ZN ZN . H ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc15 H OE2 GLU 160 H GLU 189 1_555 NA ZN ZN . H ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WOB _atom_sites.fract_transf_matrix[1][1] 0.008224 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code GA 5 ZN A 1 1101 1101 ZN ZN . HA 5 ZN B 1 2001 2001 ZN ZN . IA 5 ZN C 1 1101 1101 ZN ZN . JA 5 ZN D 1 2001 2001 ZN ZN . KA 5 ZN E 1 2001 2001 ZN ZN . LA 5 ZN F 1 1101 1101 ZN ZN . MA 5 ZN G 1 2001 2001 ZN ZN . NA 5 ZN H 1 1101 1101 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id KA _atom_site.label_entity_id 5 _atom_site.Cartn_x -12.117 _atom_site.Cartn_y 10.679 _atom_site.Cartn_z -410.335 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 126.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #