data_5WOL # _model_server_result.job_id 7tGpZfFVMaL5jl-lfcu1XQ _model_server_result.datetime_utc '2024-12-21 16:20:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5WOL # _exptl.entry_id 5WOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 123.109 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRIDINE-2-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WOL _cell.length_a 73.605 _cell.length_b 78.795 _cell.length_c 84.074 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C6 H5 N O2' _chem_comp.formula_weight 123.109 _chem_comp.id 6PC _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRIDINE-2-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PICOLINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 6PC sing 1 n n C1 C6 6PC doub 2 n y C1 N2 6PC sing 3 n y C3 C4 6PC sing 4 n y C3 N2 6PC doub 5 n y C3 H3 6PC sing 6 n n C4 C5 6PC doub 7 n y C4 H4 6PC sing 8 n n C2 O1 6PC doub 9 n n C2 O2 6PC sing 10 n n C5 C6 6PC sing 11 n y C5 H5 6PC sing 12 n n C6 H6 6PC sing 13 n n O2 HO2 6PC sing 14 n n # _atom_sites.entry_id 5WOL _atom_sites.fract_transf_matrix[1][1] 0.013586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 1 NAP NAP . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 6PC A 1 304 3 6PC 6PC . F 4 6PC A 1 305 4 6PC 6PC . G 5 PE3 A 1 306 6060 PE3 PE3 . H 6 HOH A 1 401 171 HOH HOH . H 6 HOH A 2 402 106 HOH HOH . H 6 HOH A 3 403 70 HOH HOH . H 6 HOH A 4 404 54 HOH HOH . H 6 HOH A 5 405 211 HOH HOH . H 6 HOH A 6 406 61 HOH HOH . H 6 HOH A 7 407 186 HOH HOH . H 6 HOH A 8 408 108 HOH HOH . H 6 HOH A 9 409 85 HOH HOH . H 6 HOH A 10 410 275 HOH HOH . H 6 HOH A 11 411 101 HOH HOH . H 6 HOH A 12 412 77 HOH HOH . H 6 HOH A 13 413 83 HOH HOH . H 6 HOH A 14 414 224 HOH HOH . H 6 HOH A 15 415 79 HOH HOH . H 6 HOH A 16 416 91 HOH HOH . H 6 HOH A 17 417 210 HOH HOH . H 6 HOH A 18 418 140 HOH HOH . H 6 HOH A 19 419 43 HOH HOH . H 6 HOH A 20 420 53 HOH HOH . H 6 HOH A 21 421 33 HOH HOH . H 6 HOH A 22 422 51 HOH HOH . H 6 HOH A 23 423 278 HOH HOH . H 6 HOH A 24 424 127 HOH HOH . H 6 HOH A 25 425 76 HOH HOH . H 6 HOH A 26 426 103 HOH HOH . H 6 HOH A 27 427 35 HOH HOH . H 6 HOH A 28 428 237 HOH HOH . H 6 HOH A 29 429 274 HOH HOH . H 6 HOH A 30 430 1 HOH HOH . H 6 HOH A 31 431 121 HOH HOH . H 6 HOH A 32 432 26 HOH HOH . H 6 HOH A 33 433 109 HOH HOH . H 6 HOH A 34 434 212 HOH HOH . H 6 HOH A 35 435 46 HOH HOH . H 6 HOH A 36 436 162 HOH HOH . H 6 HOH A 37 437 4 HOH HOH . H 6 HOH A 38 438 128 HOH HOH . H 6 HOH A 39 439 112 HOH HOH . H 6 HOH A 40 440 6 HOH HOH . H 6 HOH A 41 441 18 HOH HOH . H 6 HOH A 42 442 105 HOH HOH . H 6 HOH A 43 443 80 HOH HOH . H 6 HOH A 44 444 114 HOH HOH . H 6 HOH A 45 445 3 HOH HOH . H 6 HOH A 46 446 73 HOH HOH . H 6 HOH A 47 447 57 HOH HOH . H 6 HOH A 48 448 34 HOH HOH . H 6 HOH A 49 449 146 HOH HOH . H 6 HOH A 50 450 40 HOH HOH . H 6 HOH A 51 451 65 HOH HOH . H 6 HOH A 52 452 59 HOH HOH . H 6 HOH A 53 453 118 HOH HOH . H 6 HOH A 54 454 29 HOH HOH . H 6 HOH A 55 455 205 HOH HOH . H 6 HOH A 56 456 48 HOH HOH . H 6 HOH A 57 457 20 HOH HOH . H 6 HOH A 58 458 132 HOH HOH . H 6 HOH A 59 459 37 HOH HOH . H 6 HOH A 60 460 135 HOH HOH . H 6 HOH A 61 461 17 HOH HOH . H 6 HOH A 62 462 257 HOH HOH . H 6 HOH A 63 463 39 HOH HOH . H 6 HOH A 64 464 232 HOH HOH . H 6 HOH A 65 465 180 HOH HOH . H 6 HOH A 66 466 74 HOH HOH . H 6 HOH A 67 467 2 HOH HOH . H 6 HOH A 68 468 160 HOH HOH . H 6 HOH A 69 469 63 HOH HOH . H 6 HOH A 70 470 188 HOH HOH . H 6 HOH A 71 471 145 HOH HOH . H 6 HOH A 72 472 41 HOH HOH . H 6 HOH A 73 473 14 HOH HOH . H 6 HOH A 74 474 100 HOH HOH . H 6 HOH A 75 475 75 HOH HOH . H 6 HOH A 76 476 147 HOH HOH . H 6 HOH A 77 477 7 HOH HOH . H 6 HOH A 78 478 266 HOH HOH . H 6 HOH A 79 479 94 HOH HOH . H 6 HOH A 80 480 25 HOH HOH . H 6 HOH A 81 481 12 HOH HOH . H 6 HOH A 82 482 98 HOH HOH . H 6 HOH A 83 483 30 HOH HOH . H 6 HOH A 84 484 10 HOH HOH . H 6 HOH A 85 485 19 HOH HOH . H 6 HOH A 86 486 36 HOH HOH . H 6 HOH A 87 487 117 HOH HOH . H 6 HOH A 88 488 185 HOH HOH . H 6 HOH A 89 489 168 HOH HOH . H 6 HOH A 90 490 67 HOH HOH . H 6 HOH A 91 491 111 HOH HOH . H 6 HOH A 92 492 250 HOH HOH . H 6 HOH A 93 493 38 HOH HOH . H 6 HOH A 94 494 219 HOH HOH . H 6 HOH A 95 495 141 HOH HOH . H 6 HOH A 96 496 249 HOH HOH . H 6 HOH A 97 497 93 HOH HOH . H 6 HOH A 98 498 131 HOH HOH . H 6 HOH A 99 499 13 HOH HOH . H 6 HOH A 100 500 60 HOH HOH . H 6 HOH A 101 501 102 HOH HOH . H 6 HOH A 102 502 95 HOH HOH . H 6 HOH A 103 503 190 HOH HOH . H 6 HOH A 104 504 68 HOH HOH . H 6 HOH A 105 505 11 HOH HOH . H 6 HOH A 106 506 90 HOH HOH . H 6 HOH A 107 507 31 HOH HOH . H 6 HOH A 108 508 197 HOH HOH . H 6 HOH A 109 509 194 HOH HOH . H 6 HOH A 110 510 9 HOH HOH . H 6 HOH A 111 511 27 HOH HOH . H 6 HOH A 112 512 104 HOH HOH . H 6 HOH A 113 513 178 HOH HOH . H 6 HOH A 114 514 238 HOH HOH . H 6 HOH A 115 515 270 HOH HOH . H 6 HOH A 116 516 71 HOH HOH . H 6 HOH A 117 517 96 HOH HOH . H 6 HOH A 118 518 149 HOH HOH . H 6 HOH A 119 519 181 HOH HOH . H 6 HOH A 120 520 255 HOH HOH . H 6 HOH A 121 521 32 HOH HOH . H 6 HOH A 122 522 155 HOH HOH . H 6 HOH A 123 523 62 HOH HOH . H 6 HOH A 124 524 84 HOH HOH . H 6 HOH A 125 525 167 HOH HOH . H 6 HOH A 126 526 45 HOH HOH . H 6 HOH A 127 527 265 HOH HOH . H 6 HOH A 128 528 204 HOH HOH . H 6 HOH A 129 529 143 HOH HOH . H 6 HOH A 130 530 82 HOH HOH . H 6 HOH A 131 531 86 HOH HOH . H 6 HOH A 132 532 88 HOH HOH . H 6 HOH A 133 533 124 HOH HOH . H 6 HOH A 134 534 280 HOH HOH . H 6 HOH A 135 535 154 HOH HOH . H 6 HOH A 136 536 227 HOH HOH . H 6 HOH A 137 537 119 HOH HOH . H 6 HOH A 138 538 183 HOH HOH . H 6 HOH A 139 539 258 HOH HOH . H 6 HOH A 140 540 78 HOH HOH . H 6 HOH A 141 541 216 HOH HOH . H 6 HOH A 142 542 182 HOH HOH . H 6 HOH A 143 543 209 HOH HOH . H 6 HOH A 144 544 133 HOH HOH . H 6 HOH A 145 545 202 HOH HOH . H 6 HOH A 146 546 134 HOH HOH . H 6 HOH A 147 547 123 HOH HOH . H 6 HOH A 148 548 213 HOH HOH . H 6 HOH A 149 549 273 HOH HOH . H 6 HOH A 150 550 5 HOH HOH . H 6 HOH A 151 551 116 HOH HOH . H 6 HOH A 152 552 170 HOH HOH . H 6 HOH A 153 553 276 HOH HOH . H 6 HOH A 154 554 187 HOH HOH . H 6 HOH A 155 555 139 HOH HOH . H 6 HOH A 156 556 196 HOH HOH . H 6 HOH A 157 557 173 HOH HOH . H 6 HOH A 158 558 229 HOH HOH . H 6 HOH A 159 559 115 HOH HOH . H 6 HOH A 160 560 176 HOH HOH . H 6 HOH A 161 561 240 HOH HOH . H 6 HOH A 162 562 195 HOH HOH . H 6 HOH A 163 563 259 HOH HOH . H 6 HOH A 164 564 55 HOH HOH . H 6 HOH A 165 565 21 HOH HOH . H 6 HOH A 166 566 233 HOH HOH . H 6 HOH A 167 567 277 HOH HOH . H 6 HOH A 168 568 172 HOH HOH . H 6 HOH A 169 569 226 HOH HOH . H 6 HOH A 170 570 198 HOH HOH . H 6 HOH A 171 571 248 HOH HOH . H 6 HOH A 172 572 107 HOH HOH . H 6 HOH A 173 573 252 HOH HOH . H 6 HOH A 174 574 15 HOH HOH . H 6 HOH A 175 575 222 HOH HOH . H 6 HOH A 176 576 69 HOH HOH . H 6 HOH A 177 577 193 HOH HOH . H 6 HOH A 178 578 126 HOH HOH . H 6 HOH A 179 579 200 HOH HOH . H 6 HOH A 180 580 199 HOH HOH . H 6 HOH A 181 581 184 HOH HOH . H 6 HOH A 182 582 44 HOH HOH . H 6 HOH A 183 583 50 HOH HOH . H 6 HOH A 184 584 125 HOH HOH . H 6 HOH A 185 585 239 HOH HOH . H 6 HOH A 186 586 56 HOH HOH . H 6 HOH A 187 587 217 HOH HOH . H 6 HOH A 188 588 120 HOH HOH . H 6 HOH A 189 589 256 HOH HOH . H 6 HOH A 190 590 164 HOH HOH . H 6 HOH A 191 591 253 HOH HOH . H 6 HOH A 192 592 214 HOH HOH . H 6 HOH A 193 593 16 HOH HOH . H 6 HOH A 194 594 81 HOH HOH . H 6 HOH A 195 595 243 HOH HOH . H 6 HOH A 196 596 242 HOH HOH . H 6 HOH A 197 597 156 HOH HOH . H 6 HOH A 198 598 179 HOH HOH . H 6 HOH A 199 599 269 HOH HOH . H 6 HOH A 200 600 161 HOH HOH . H 6 HOH A 201 601 87 HOH HOH . H 6 HOH A 202 602 279 HOH HOH . H 6 HOH A 203 603 148 HOH HOH . H 6 HOH A 204 604 150 HOH HOH . H 6 HOH A 205 605 64 HOH HOH . H 6 HOH A 206 606 192 HOH HOH . H 6 HOH A 207 607 130 HOH HOH . H 6 HOH A 208 608 223 HOH HOH . H 6 HOH A 209 609 52 HOH HOH . H 6 HOH A 210 610 28 HOH HOH . H 6 HOH A 211 611 267 HOH HOH . H 6 HOH A 212 612 8 HOH HOH . H 6 HOH A 213 613 153 HOH HOH . H 6 HOH A 214 614 271 HOH HOH . H 6 HOH A 215 615 218 HOH HOH . H 6 HOH A 216 616 113 HOH HOH . H 6 HOH A 217 617 97 HOH HOH . H 6 HOH A 218 618 66 HOH HOH . H 6 HOH A 219 619 272 HOH HOH . H 6 HOH A 220 620 157 HOH HOH . H 6 HOH A 221 621 177 HOH HOH . H 6 HOH A 222 622 241 HOH HOH . H 6 HOH A 223 623 207 HOH HOH . H 6 HOH A 224 624 189 HOH HOH . H 6 HOH A 225 625 244 HOH HOH . H 6 HOH A 226 626 234 HOH HOH . H 6 HOH A 227 627 264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6PC . . . E 4 6.991 -8.77 24.074 1 47.08 ? C1 6PC 304 A 1 HETATM 2 C C3 6PC . . . E 4 8.111 -7.509 25.712 1 40.05 ? C3 6PC 304 A 1 HETATM 3 C C4 6PC . . . E 4 8.692 -6.726 24.721 1 35.79 ? C4 6PC 304 A 1 HETATM 4 C C2 6PC . . . E 4 6.044 -9.908 23.689 1 54.78 ? C2 6PC 304 A 1 HETATM 5 C C5 6PC . . . E 4 8.413 -6.973 23.413 1 35.45 ? C5 6PC 304 A 1 HETATM 6 C C6 6PC . . . E 4 7.573 -7.985 23.081 1 41.22 ? C6 6PC 304 A 1 HETATM 7 O O1 6PC . . . E 4 5.671 -10.034 22.491 1 57.03 ? O1 6PC 304 A 1 HETATM 8 O O2 6PC . . . E 4 5.635 -10.724 24.561 1 56.72 ? O2 6PC 304 A 1 HETATM 9 N N2 6PC . . . E 4 7.266 -8.52 25.382 1 43.87 ? N2 6PC 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #