data_5WPB # _model_server_result.job_id Nbvc6Tv8u4zZ2MHabwIPSA _model_server_result.datetime_utc '2024-11-22 00:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1304}' # _entry.id 5WPB # _exptl.entry_id 5WPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.319 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{3-[(pyridin-2-yl)methoxy]quinoxalin-2-yl}propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WPB _cell.length_a 40.85 _cell.length_b 43.74 _cell.length_c 55.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 7 A CYS 1113 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A ND1 HIS 9 A HIS 1115 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 A SG CYS 27 A CYS 1133 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 A SG CYS 30 A CYS 1136 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 A SG CYS 39 A CYS 1145 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc6 A SG CYS 42 A CYS 1148 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 A SG CYS 47 A CYS 1153 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 A ND1 HIS 54 A HIS 1160 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc9 A NE2 HIS 58 A HIS 1164 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 A ND1 HIS 64 A HIS 1170 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc11 A SG CYS 77 A CYS 1183 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 A SG CYS 80 A CYS 1186 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'C17 H15 N3 O3' _chem_comp.formula_weight 309.319 _chem_comp.id B8P _chem_comp.mon_nstd_flag . _chem_comp.name '3-{3-[(pyridin-2-yl)methoxy]quinoxalin-2-yl}propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 B8P doub 70 n y C8 C9 B8P sing 71 n y C7 C6 B8P sing 72 n y N1 C9 B8P sing 73 n y N1 C2 B8P doub 74 n y O2 C16 B8P doub 75 n n C9 C4 B8P doub 76 n y C6 C5 B8P doub 77 n y C C16 B8P sing 78 n n C C1 B8P sing 79 n n C16 O1 B8P sing 80 n n C2 C1 B8P sing 81 n n C2 C3 B8P sing 82 n y C4 C5 B8P sing 83 n y C4 N B8P sing 84 n y C3 N B8P doub 85 n y C3 O B8P sing 86 n n O C10 B8P sing 87 n n C10 C11 B8P sing 88 n n N2 C11 B8P doub 89 n y N2 C15 B8P sing 90 n y C11 C12 B8P sing 91 n y C15 C14 B8P doub 92 n y C12 C13 B8P doub 93 n y C14 C13 B8P sing 94 n y C6 H1 B8P sing 95 n n C5 H2 B8P sing 96 n n O1 H3 B8P sing 97 n n C H4 B8P sing 98 n n C H5 B8P sing 99 n n C1 H6 B8P sing 100 n n C1 H7 B8P sing 101 n n C8 H8 B8P sing 102 n n C7 H9 B8P sing 103 n n C10 H10 B8P sing 104 n n C10 H11 B8P sing 105 n n C15 H12 B8P sing 106 n n C14 H13 B8P sing 107 n n C13 H14 B8P sing 108 n n C12 H15 B8P sing 109 n n # _atom_sites.entry_id 5WPB _atom_sites.fract_transf_matrix[1][1] 0.02448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1301 201 ZN ZN . C 2 ZN A 1 1302 202 ZN ZN . D 2 ZN A 1 1303 203 ZN ZN . E 3 B8P A 1 1304 1 B8P I76 . F 4 UNX A 1 1305 3 UNX UNX . G 4 UNX A 1 1306 4 UNX UNX . H 4 UNX A 1 1307 5 UNX UNX . I 4 UNX A 1 1308 6 UNX UNX . J 4 UNX A 1 1309 7 UNX UNX . K 4 UNX A 1 1310 8 UNX UNX . L 4 UNX A 1 1311 9 UNX UNX . M 4 UNX A 1 1312 10 UNX UNX . N 4 UNX A 1 1313 11 UNX UNX . O 4 UNX A 1 1314 12 UNX UNX . P 4 UNX A 1 1315 13 UNX UNX . Q 4 UNX A 1 1316 14 UNX UNX . R 4 UNX A 1 1317 15 UNX UNX . S 4 UNX A 1 1318 16 UNX UNX . T 4 UNX A 1 1319 17 UNX UNX . U 4 UNX A 1 1320 18 UNX UNX . V 4 UNX A 1 1321 19 UNX UNX . W 5 HOH A 1 1401 85 HOH HOH . W 5 HOH A 2 1402 64 HOH HOH . W 5 HOH A 3 1403 113 HOH HOH . W 5 HOH A 4 1404 70 HOH HOH . W 5 HOH A 5 1405 54 HOH HOH . W 5 HOH A 6 1406 114 HOH HOH . W 5 HOH A 7 1407 12 HOH HOH . W 5 HOH A 8 1408 106 HOH HOH . W 5 HOH A 9 1409 35 HOH HOH . W 5 HOH A 10 1410 69 HOH HOH . W 5 HOH A 11 1411 4 HOH HOH . W 5 HOH A 12 1412 59 HOH HOH . W 5 HOH A 13 1413 36 HOH HOH . W 5 HOH A 14 1414 3 HOH HOH . W 5 HOH A 15 1415 14 HOH HOH . W 5 HOH A 16 1416 28 HOH HOH . W 5 HOH A 17 1417 11 HOH HOH . W 5 HOH A 18 1418 84 HOH HOH . W 5 HOH A 19 1419 37 HOH HOH . W 5 HOH A 20 1420 18 HOH HOH . W 5 HOH A 21 1421 5 HOH HOH . W 5 HOH A 22 1422 58 HOH HOH . W 5 HOH A 23 1423 87 HOH HOH . W 5 HOH A 24 1424 41 HOH HOH . W 5 HOH A 25 1425 62 HOH HOH . W 5 HOH A 26 1426 108 HOH HOH . W 5 HOH A 27 1427 81 HOH HOH . W 5 HOH A 28 1428 45 HOH HOH . W 5 HOH A 29 1429 117 HOH HOH . W 5 HOH A 30 1430 19 HOH HOH . W 5 HOH A 31 1431 76 HOH HOH . W 5 HOH A 32 1432 16 HOH HOH . W 5 HOH A 33 1433 56 HOH HOH . W 5 HOH A 34 1434 43 HOH HOH . W 5 HOH A 35 1435 78 HOH HOH . W 5 HOH A 36 1436 61 HOH HOH . W 5 HOH A 37 1437 38 HOH HOH . W 5 HOH A 38 1438 82 HOH HOH . W 5 HOH A 39 1439 13 HOH HOH . W 5 HOH A 40 1440 2 HOH HOH . W 5 HOH A 41 1441 115 HOH HOH . W 5 HOH A 42 1442 22 HOH HOH . W 5 HOH A 43 1443 67 HOH HOH . W 5 HOH A 44 1444 86 HOH HOH . W 5 HOH A 45 1445 10 HOH HOH . W 5 HOH A 46 1446 68 HOH HOH . W 5 HOH A 47 1447 17 HOH HOH . W 5 HOH A 48 1448 25 HOH HOH . W 5 HOH A 49 1449 109 HOH HOH . W 5 HOH A 50 1450 120 HOH HOH . W 5 HOH A 51 1451 77 HOH HOH . W 5 HOH A 52 1452 46 HOH HOH . W 5 HOH A 53 1453 21 HOH HOH . W 5 HOH A 54 1454 24 HOH HOH . W 5 HOH A 55 1455 72 HOH HOH . W 5 HOH A 56 1456 48 HOH HOH . W 5 HOH A 57 1457 8 HOH HOH . W 5 HOH A 58 1458 6 HOH HOH . W 5 HOH A 59 1459 49 HOH HOH . W 5 HOH A 60 1460 9 HOH HOH . W 5 HOH A 61 1461 60 HOH HOH . W 5 HOH A 62 1462 95 HOH HOH . W 5 HOH A 63 1463 74 HOH HOH . W 5 HOH A 64 1464 63 HOH HOH . W 5 HOH A 65 1465 39 HOH HOH . W 5 HOH A 66 1466 27 HOH HOH . W 5 HOH A 67 1467 107 HOH HOH . W 5 HOH A 68 1468 125 HOH HOH . W 5 HOH A 69 1469 33 HOH HOH . W 5 HOH A 70 1470 73 HOH HOH . W 5 HOH A 71 1471 51 HOH HOH . W 5 HOH A 72 1472 129 HOH HOH . W 5 HOH A 73 1473 47 HOH HOH . W 5 HOH A 74 1474 53 HOH HOH . W 5 HOH A 75 1475 98 HOH HOH . W 5 HOH A 76 1476 127 HOH HOH . W 5 HOH A 77 1477 57 HOH HOH . W 5 HOH A 78 1478 20 HOH HOH . W 5 HOH A 79 1479 116 HOH HOH . W 5 HOH A 80 1480 50 HOH HOH . W 5 HOH A 81 1481 121 HOH HOH . W 5 HOH A 82 1482 96 HOH HOH . W 5 HOH A 83 1483 111 HOH HOH . W 5 HOH A 84 1484 7 HOH HOH . W 5 HOH A 85 1485 110 HOH HOH . W 5 HOH A 86 1486 88 HOH HOH . W 5 HOH A 87 1487 124 HOH HOH . W 5 HOH A 88 1488 128 HOH HOH . W 5 HOH A 89 1489 90 HOH HOH . W 5 HOH A 90 1490 89 HOH HOH . W 5 HOH A 91 1491 93 HOH HOH . W 5 HOH A 92 1492 83 HOH HOH . W 5 HOH A 93 1493 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B8P . A . E 3 -1.485 4.631 8.732 0.8 16.87 ? C4 B8P 1304 A 1 HETATM 2 C C2 B8P . A . E 3 0.481 2.777 8.494 0.8 13.24 ? C2 B8P 1304 A 1 HETATM 3 N N1 B8P . A . E 3 0.141 3.4 7.398 0.8 14.39 ? N1 B8P 1304 A 1 HETATM 4 C C6 B8P . A . E 3 -2.888 6.229 7.618 0.8 18.78 ? C6 B8P 1304 A 1 HETATM 5 C C5 B8P . A . E 3 -2.515 5.594 8.765 0.8 17.84 ? C5 B8P 1304 A 1 HETATM 6 O O2 B8P . A . E 3 4.406 3.981 7.456 0.8 7.96 ? O2 B8P 1304 A 1 HETATM 7 C C16 B8P . A . E 3 3.546 3.532 8.136 0.8 9.27 ? C16 B8P 1304 A 1 HETATM 8 O O1 B8P . A . E 3 3.207 4.084 9.283 0.8 9.84 ? O1 B8P 1304 A 1 HETATM 9 C C B8P . A . E 3 2.809 2.302 7.651 0.8 10.5 ? C B8P 1304 A 1 HETATM 10 C C1 B8P . A . E 3 1.64 1.822 8.503 0.8 11.59 ? C1 B8P 1304 A 1 HETATM 11 C C9 B8P . A . E 3 -0.845 4.349 7.496 0.8 16.38 ? C9 B8P 1304 A 1 HETATM 12 C C8 B8P . A . E 3 -1.24 5.056 6.339 0.8 17.61 ? C8 B8P 1304 A 1 HETATM 13 C C7 B8P . A . E 3 -2.233 5.981 6.413 0.8 17.79 ? C7 B8P 1304 A 1 HETATM 14 N N B8P . A . E 3 -1.148 3.97 9.883 0.8 14.61 ? N B8P 1304 A 1 HETATM 15 C C3 B8P . A . E 3 -0.211 3.08 9.754 0.8 13.33 ? C3 B8P 1304 A 1 HETATM 16 O O B8P . A . E 3 0.156 2.328 10.805 0.8 13.34 ? O B8P 1304 A 1 HETATM 17 C C10 B8P . A . E 3 -0.483 2.603 12.07 0.8 13.01 ? C10 B8P 1304 A 1 HETATM 18 C C11 B8P . A . E 3 -0.013 1.559 13.039 0.8 12.23 ? C11 B8P 1304 A 1 HETATM 19 N N2 B8P . A . E 3 -0.416 0.306 12.769 0.8 11.58 ? N2 B8P 1304 A 1 HETATM 20 C C15 B8P . A . E 3 0.037 -0.674 13.563 0.8 12.1 ? C15 B8P 1304 A 1 HETATM 21 C C14 B8P . A . E 3 0.875 -0.461 14.632 0.8 11.89 ? C14 B8P 1304 A 1 HETATM 22 C C13 B8P . A . E 3 1.286 0.822 14.885 0.8 11.9 ? C13 B8P 1304 A 1 HETATM 23 C C12 B8P . A . E 3 0.843 1.855 14.085 0.8 11.89 ? C12 B8P 1304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #