data_5WPB
#
_model_server_result.job_id            MJkWbEtWobw5luvfLukV-Q 
_model_server_result.datetime_utc      '2024-11-21 23:56:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1319}' 
#
_entry.id    5WPB 
#
_exptl.entry_id    5WPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              18.015 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'UNKNOWN ATOM OR ION' 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5WPB 
_cell.length_a            40.85 
_cell.length_b            43.74 
_cell.length_c            55.76 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 7 A CYS 1113 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 A ND1 HIS 9 A HIS 1115 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc3 A SG CYS 27 A CYS 1133 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc4 A SG CYS 30 A CYS 1136 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc5 A SG CYS 39 A CYS 1145 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc6 A SG CYS 42 A CYS 1148 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc7 A SG CYS 47 A CYS 1153 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc8 A ND1 HIS 54 A HIS 1160 1_555 C ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc9 A NE2 HIS 58 A HIS 1164 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc10 A ND1 HIS 64 A HIS 1170 1_555 B ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc11 A SG CYS 77 A CYS 1183 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc12 A SG CYS 80 A CYS 1186 1_555 D ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
#
_chem_comp.formula           ? 
_chem_comp.formula_weight    ? 
_chem_comp.id                UNX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'UNKNOWN ATOM OR ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5WPB 
_atom_sites.fract_transf_matrix[1][1]    0.02448 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1301 201 ZN ZN . 
C 2 ZN A 1 1302 202 ZN ZN . 
D 2 ZN A 1 1303 203 ZN ZN . 
E 3 B8P A 1 1304 1 B8P I76 . 
F 4 UNX A 1 1305 3 UNX UNX . 
G 4 UNX A 1 1306 4 UNX UNX . 
H 4 UNX A 1 1307 5 UNX UNX . 
I 4 UNX A 1 1308 6 UNX UNX . 
J 4 UNX A 1 1309 7 UNX UNX . 
K 4 UNX A 1 1310 8 UNX UNX . 
L 4 UNX A 1 1311 9 UNX UNX . 
M 4 UNX A 1 1312 10 UNX UNX . 
N 4 UNX A 1 1313 11 UNX UNX . 
O 4 UNX A 1 1314 12 UNX UNX . 
P 4 UNX A 1 1315 13 UNX UNX . 
Q 4 UNX A 1 1316 14 UNX UNX . 
R 4 UNX A 1 1317 15 UNX UNX . 
S 4 UNX A 1 1318 16 UNX UNX . 
T 4 UNX A 1 1319 17 UNX UNX . 
U 4 UNX A 1 1320 18 UNX UNX . 
V 4 UNX A 1 1321 19 UNX UNX . 
W 5 HOH A 1 1401 85 HOH HOH . 
W 5 HOH A 2 1402 64 HOH HOH . 
W 5 HOH A 3 1403 113 HOH HOH . 
W 5 HOH A 4 1404 70 HOH HOH . 
W 5 HOH A 5 1405 54 HOH HOH . 
W 5 HOH A 6 1406 114 HOH HOH . 
W 5 HOH A 7 1407 12 HOH HOH . 
W 5 HOH A 8 1408 106 HOH HOH . 
W 5 HOH A 9 1409 35 HOH HOH . 
W 5 HOH A 10 1410 69 HOH HOH . 
W 5 HOH A 11 1411 4 HOH HOH . 
W 5 HOH A 12 1412 59 HOH HOH . 
W 5 HOH A 13 1413 36 HOH HOH . 
W 5 HOH A 14 1414 3 HOH HOH . 
W 5 HOH A 15 1415 14 HOH HOH . 
W 5 HOH A 16 1416 28 HOH HOH . 
W 5 HOH A 17 1417 11 HOH HOH . 
W 5 HOH A 18 1418 84 HOH HOH . 
W 5 HOH A 19 1419 37 HOH HOH . 
W 5 HOH A 20 1420 18 HOH HOH . 
W 5 HOH A 21 1421 5 HOH HOH . 
W 5 HOH A 22 1422 58 HOH HOH . 
W 5 HOH A 23 1423 87 HOH HOH . 
W 5 HOH A 24 1424 41 HOH HOH . 
W 5 HOH A 25 1425 62 HOH HOH . 
W 5 HOH A 26 1426 108 HOH HOH . 
W 5 HOH A 27 1427 81 HOH HOH . 
W 5 HOH A 28 1428 45 HOH HOH . 
W 5 HOH A 29 1429 117 HOH HOH . 
W 5 HOH A 30 1430 19 HOH HOH . 
W 5 HOH A 31 1431 76 HOH HOH . 
W 5 HOH A 32 1432 16 HOH HOH . 
W 5 HOH A 33 1433 56 HOH HOH . 
W 5 HOH A 34 1434 43 HOH HOH . 
W 5 HOH A 35 1435 78 HOH HOH . 
W 5 HOH A 36 1436 61 HOH HOH . 
W 5 HOH A 37 1437 38 HOH HOH . 
W 5 HOH A 38 1438 82 HOH HOH . 
W 5 HOH A 39 1439 13 HOH HOH . 
W 5 HOH A 40 1440 2 HOH HOH . 
W 5 HOH A 41 1441 115 HOH HOH . 
W 5 HOH A 42 1442 22 HOH HOH . 
W 5 HOH A 43 1443 67 HOH HOH . 
W 5 HOH A 44 1444 86 HOH HOH . 
W 5 HOH A 45 1445 10 HOH HOH . 
W 5 HOH A 46 1446 68 HOH HOH . 
W 5 HOH A 47 1447 17 HOH HOH . 
W 5 HOH A 48 1448 25 HOH HOH . 
W 5 HOH A 49 1449 109 HOH HOH . 
W 5 HOH A 50 1450 120 HOH HOH . 
W 5 HOH A 51 1451 77 HOH HOH . 
W 5 HOH A 52 1452 46 HOH HOH . 
W 5 HOH A 53 1453 21 HOH HOH . 
W 5 HOH A 54 1454 24 HOH HOH . 
W 5 HOH A 55 1455 72 HOH HOH . 
W 5 HOH A 56 1456 48 HOH HOH . 
W 5 HOH A 57 1457 8 HOH HOH . 
W 5 HOH A 58 1458 6 HOH HOH . 
W 5 HOH A 59 1459 49 HOH HOH . 
W 5 HOH A 60 1460 9 HOH HOH . 
W 5 HOH A 61 1461 60 HOH HOH . 
W 5 HOH A 62 1462 95 HOH HOH . 
W 5 HOH A 63 1463 74 HOH HOH . 
W 5 HOH A 64 1464 63 HOH HOH . 
W 5 HOH A 65 1465 39 HOH HOH . 
W 5 HOH A 66 1466 27 HOH HOH . 
W 5 HOH A 67 1467 107 HOH HOH . 
W 5 HOH A 68 1468 125 HOH HOH . 
W 5 HOH A 69 1469 33 HOH HOH . 
W 5 HOH A 70 1470 73 HOH HOH . 
W 5 HOH A 71 1471 51 HOH HOH . 
W 5 HOH A 72 1472 129 HOH HOH . 
W 5 HOH A 73 1473 47 HOH HOH . 
W 5 HOH A 74 1474 53 HOH HOH . 
W 5 HOH A 75 1475 98 HOH HOH . 
W 5 HOH A 76 1476 127 HOH HOH . 
W 5 HOH A 77 1477 57 HOH HOH . 
W 5 HOH A 78 1478 20 HOH HOH . 
W 5 HOH A 79 1479 116 HOH HOH . 
W 5 HOH A 80 1480 50 HOH HOH . 
W 5 HOH A 81 1481 121 HOH HOH . 
W 5 HOH A 82 1482 96 HOH HOH . 
W 5 HOH A 83 1483 111 HOH HOH . 
W 5 HOH A 84 1484 7 HOH HOH . 
W 5 HOH A 85 1485 110 HOH HOH . 
W 5 HOH A 86 1486 88 HOH HOH . 
W 5 HOH A 87 1487 124 HOH HOH . 
W 5 HOH A 88 1488 128 HOH HOH . 
W 5 HOH A 89 1489 90 HOH HOH . 
W 5 HOH A 90 1490 89 HOH HOH . 
W 5 HOH A 91 1491 93 HOH HOH . 
W 5 HOH A 92 1492 83 HOH HOH . 
W 5 HOH A 93 1493 103 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           X 
_atom_site.label_atom_id         UNK 
_atom_site.label_comp_id         UNX 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         T 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               0.377 
_atom_site.Cartn_y               -6.864 
_atom_site.Cartn_z               -7.592 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          UNK 
_atom_site.auth_comp_id          UNX 
_atom_site.auth_seq_id           1319 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#