data_5WPM # _model_server_result.job_id 4pF0Dy_f_Ftdeyaq1rJRMw _model_server_result.datetime_utc '2024-11-22 19:58:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 5WPM # _exptl.entry_id 5WPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.38 _cell.angle_gamma 90 _cell.entry_id 5WPM _cell.length_a 41.934 _cell.length_b 37.81 _cell.length_c 70.179 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 7 B CYS 7 1_555 C SG CYS 7 C CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OG SER 17 A SER 17 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A O VAL 81 A VAL 81 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc3 A O SER 89 A SER 89 1_555 F MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 D O2G GNP . A GNP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc5 D O2B GNP . A GNP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 E MG MG . A MG 202 1_555 H O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc7 E MG MG . A MG 202 1_555 H O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc8 E MG MG . A MG 202 1_555 H O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WPM _atom_sites.fract_transf_matrix[1][1] 0.023847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00567 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GNP A 1 201 180 GNP GNP . E 4 MG A 1 202 181 MG MG . F 4 MG A 1 203 1 MG MG . G 5 SO4 C 1 101 2 SO4 SO4 . H 6 HOH A 1 301 55 HOH HOH . H 6 HOH A 2 302 65 HOH HOH . H 6 HOH A 3 303 8 HOH HOH . H 6 HOH A 4 304 26 HOH HOH . H 6 HOH A 5 305 30 HOH HOH . H 6 HOH A 6 306 9 HOH HOH . H 6 HOH A 7 307 35 HOH HOH . H 6 HOH A 8 308 36 HOH HOH . H 6 HOH A 9 309 7 HOH HOH . H 6 HOH A 10 310 45 HOH HOH . H 6 HOH A 11 311 75 HOH HOH . H 6 HOH A 12 312 14 HOH HOH . H 6 HOH A 13 313 25 HOH HOH . H 6 HOH A 14 314 5 HOH HOH . H 6 HOH A 15 315 3 HOH HOH . H 6 HOH A 16 316 1 HOH HOH . H 6 HOH A 17 317 6 HOH HOH . H 6 HOH A 18 318 33 HOH HOH . H 6 HOH A 19 319 34 HOH HOH . H 6 HOH A 20 320 37 HOH HOH . H 6 HOH A 21 321 46 HOH HOH . H 6 HOH A 22 322 24 HOH HOH . H 6 HOH A 23 323 71 HOH HOH . H 6 HOH A 24 324 31 HOH HOH . H 6 HOH A 25 325 28 HOH HOH . H 6 HOH A 26 326 27 HOH HOH . H 6 HOH A 27 327 69 HOH HOH . H 6 HOH A 28 328 43 HOH HOH . H 6 HOH A 29 329 50 HOH HOH . H 6 HOH A 30 330 11 HOH HOH . H 6 HOH A 31 331 32 HOH HOH . I 6 HOH B 1 101 15 HOH HOH . I 6 HOH B 2 102 51 HOH HOH . I 6 HOH B 3 103 12 HOH HOH . I 6 HOH B 4 104 38 HOH HOH . I 6 HOH B 5 105 39 HOH HOH . I 6 HOH B 6 106 17 HOH HOH . I 6 HOH B 7 107 2 HOH HOH . I 6 HOH B 8 108 47 HOH HOH . I 6 HOH B 9 109 18 HOH HOH . I 6 HOH B 10 110 10 HOH HOH . I 6 HOH B 11 111 57 HOH HOH . I 6 HOH B 12 112 40 HOH HOH . I 6 HOH B 13 113 58 HOH HOH . I 6 HOH B 14 114 20 HOH HOH . I 6 HOH B 15 115 59 HOH HOH . I 6 HOH B 16 116 52 HOH HOH . I 6 HOH B 17 117 53 HOH HOH . I 6 HOH B 18 118 56 HOH HOH . I 6 HOH B 19 119 16 HOH HOH . I 6 HOH B 20 120 42 HOH HOH . J 6 HOH C 1 201 19 HOH HOH . J 6 HOH C 2 202 66 HOH HOH . J 6 HOH C 3 203 63 HOH HOH . J 6 HOH C 4 204 60 HOH HOH . J 6 HOH C 5 205 41 HOH HOH . J 6 HOH C 6 206 48 HOH HOH . J 6 HOH C 7 207 21 HOH HOH . J 6 HOH C 8 208 49 HOH HOH . J 6 HOH C 9 209 54 HOH HOH . J 6 HOH C 10 210 61 HOH HOH . J 6 HOH C 11 211 22 HOH HOH . J 6 HOH C 12 212 67 HOH HOH . J 6 HOH C 13 213 72 HOH HOH . J 6 HOH C 14 214 73 HOH HOH . J 6 HOH C 15 215 62 HOH HOH . J 6 HOH C 16 216 64 HOH HOH . J 6 HOH C 17 217 74 HOH HOH . J 6 HOH C 18 218 68 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 83.256 _atom_site.Cartn_y -46.978 _atom_site.Cartn_z 18.393 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 1 #