data_5WQG # _model_server_result.job_id -esFyhBaxOsem2F1Yd5I5g _model_server_result.datetime_utc '2025-01-10 12:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wqg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":201}' # _entry.id 5WQG # _exptl.entry_id 5WQG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.97 _cell.angle_gamma 90 _cell.entry_id 5WQG _cell.length_a 99.44 _cell.length_b 47.13 _cell.length_c 121.13 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WQG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I,J,P,R 1 1 B,D,H,K,L,Q,S 2 1 E,F,M,N,O,T,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 154 A GLU 134 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc2 A OD1 ASP 158 A ASP 138 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A OD2 ASP 158 A ASP 138 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 A O ASP 158 A ASP 138 1_555 H CA CA . B CA 201 2_855 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 G CA CA . A CA 201 2_845 B O ASP 158 B ASP 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 G CA CA . A CA 201 1_555 Q O HOH . B HOH 333 2_855 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 P O HOH . A HOH 316 2_845 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc8 B OE2 GLU 154 B GLU 134 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc9 B OD1 ASP 158 B ASP 138 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc10 B OD2 ASP 158 B ASP 138 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc11 C OD1 ASP 158 C ASP 138 1_555 J CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc12 C OD2 ASP 158 C ASP 138 1_555 J CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc13 C O ASP 158 C ASP 138 1_555 O CA CA . F CA 202 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc14 J CA CA . C CA 202 1_555 R O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc15 J CA CA . C CA 202 1_455 F O ASP 158 F ASP 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc16 D OD1 ASP 158 D ASP 138 1_555 L CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc17 D OD2 ASP 158 D ASP 138 1_555 L CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc18 D O ASP 158 D ASP 138 1_555 M CA CA . E CA 201 2_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc19 L CA CA . D CA 202 1_555 S O HOH . D HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc20 L CA CA . D CA 202 1_555 S O HOH . D HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc21 L CA CA . D CA 202 2_745 E O ASP 158 E ASP 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc22 S O HOH . D HOH 317 2_745 M CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc23 E OD1 ASP 158 E ASP 138 1_555 M CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc24 E OD2 ASP 158 E ASP 138 1_555 M CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc25 M CA CA . E CA 201 1_555 T O HOH . E HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc26 M CA CA . E CA 201 1_555 T O HOH . E HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc27 F OD1 ASP 158 F ASP 138 1_555 O CA CA . F CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc28 F OD2 ASP 158 F ASP 138 1_555 O CA CA . F CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc29 O CA CA . F CA 202 1_555 U O HOH . F HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc30 O CA CA . F CA 202 1_555 U O HOH . F HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc31 O CA CA . F CA 202 1_555 U O HOH . F HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5WQG _atom_sites.fract_transf_matrix[1][1] 0.010056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003262 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CA A 1 201 2 CA CA . H 2 CA B 1 201 3 CA CA . I 3 7MI C 1 201 1 7MI DRG . J 2 CA C 1 202 1 CA CA . K 3 7MI D 1 201 3 7MI DRG . L 2 CA D 1 202 7 CA CA . M 2 CA E 1 201 5 CA CA . N 3 7MI F 1 201 2 7MI DRG . O 2 CA F 1 202 6 CA CA . P 4 HOH A 1 301 147 HOH HOH . P 4 HOH A 2 302 73 HOH HOH . P 4 HOH A 3 303 131 HOH HOH . P 4 HOH A 4 304 89 HOH HOH . P 4 HOH A 5 305 52 HOH HOH . P 4 HOH A 6 306 59 HOH HOH . P 4 HOH A 7 307 196 HOH HOH . P 4 HOH A 8 308 114 HOH HOH . P 4 HOH A 9 309 163 HOH HOH . P 4 HOH A 10 310 27 HOH HOH . P 4 HOH A 11 311 17 HOH HOH . P 4 HOH A 12 312 18 HOH HOH . P 4 HOH A 13 313 129 HOH HOH . P 4 HOH A 14 314 2 HOH HOH . P 4 HOH A 15 315 28 HOH HOH . P 4 HOH A 16 316 128 HOH HOH . P 4 HOH A 17 317 9 HOH HOH . P 4 HOH A 18 318 4 HOH HOH . P 4 HOH A 19 319 50 HOH HOH . P 4 HOH A 20 320 33 HOH HOH . P 4 HOH A 21 321 15 HOH HOH . P 4 HOH A 22 322 23 HOH HOH . P 4 HOH A 23 323 180 HOH HOH . P 4 HOH A 24 324 186 HOH HOH . P 4 HOH A 25 325 158 HOH HOH . P 4 HOH A 26 326 16 HOH HOH . P 4 HOH A 27 327 72 HOH HOH . P 4 HOH A 28 328 164 HOH HOH . P 4 HOH A 29 329 123 HOH HOH . P 4 HOH A 30 330 51 HOH HOH . P 4 HOH A 31 331 35 HOH HOH . P 4 HOH A 32 332 101 HOH HOH . P 4 HOH A 33 333 124 HOH HOH . P 4 HOH A 34 334 132 HOH HOH . P 4 HOH A 35 335 197 HOH HOH . P 4 HOH A 36 336 71 HOH HOH . P 4 HOH A 37 337 56 HOH HOH . P 4 HOH A 38 338 188 HOH HOH . P 4 HOH A 39 339 43 HOH HOH . P 4 HOH A 40 340 167 HOH HOH . P 4 HOH A 41 341 174 HOH HOH . P 4 HOH A 42 342 154 HOH HOH . P 4 HOH A 43 343 69 HOH HOH . P 4 HOH A 44 344 135 HOH HOH . P 4 HOH A 45 345 54 HOH HOH . P 4 HOH A 46 346 115 HOH HOH . P 4 HOH A 47 347 182 HOH HOH . Q 4 HOH B 1 301 36 HOH HOH . Q 4 HOH B 2 302 107 HOH HOH . Q 4 HOH B 3 303 177 HOH HOH . Q 4 HOH B 4 304 166 HOH HOH . Q 4 HOH B 5 305 39 HOH HOH . Q 4 HOH B 6 306 6 HOH HOH . Q 4 HOH B 7 307 91 HOH HOH . Q 4 HOH B 8 308 14 HOH HOH . Q 4 HOH B 9 309 7 HOH HOH . Q 4 HOH B 10 310 55 HOH HOH . Q 4 HOH B 11 311 76 HOH HOH . Q 4 HOH B 12 312 102 HOH HOH . Q 4 HOH B 13 313 138 HOH HOH . Q 4 HOH B 14 314 105 HOH HOH . Q 4 HOH B 15 315 41 HOH HOH . Q 4 HOH B 16 316 80 HOH HOH . Q 4 HOH B 17 317 83 HOH HOH . Q 4 HOH B 18 318 150 HOH HOH . Q 4 HOH B 19 319 21 HOH HOH . Q 4 HOH B 20 320 151 HOH HOH . Q 4 HOH B 21 321 140 HOH HOH . Q 4 HOH B 22 322 125 HOH HOH . Q 4 HOH B 23 323 30 HOH HOH . Q 4 HOH B 24 324 122 HOH HOH . Q 4 HOH B 25 325 111 HOH HOH . Q 4 HOH B 26 326 13 HOH HOH . Q 4 HOH B 27 327 145 HOH HOH . Q 4 HOH B 28 328 57 HOH HOH . Q 4 HOH B 29 329 93 HOH HOH . Q 4 HOH B 30 330 79 HOH HOH . Q 4 HOH B 31 331 155 HOH HOH . Q 4 HOH B 32 332 106 HOH HOH . Q 4 HOH B 33 333 119 HOH HOH . Q 4 HOH B 34 334 181 HOH HOH . Q 4 HOH B 35 335 194 HOH HOH . Q 4 HOH B 36 336 94 HOH HOH . Q 4 HOH B 37 337 130 HOH HOH . Q 4 HOH B 38 338 133 HOH HOH . R 4 HOH C 1 301 144 HOH HOH . R 4 HOH C 2 302 32 HOH HOH . R 4 HOH C 3 303 178 HOH HOH . R 4 HOH C 4 304 148 HOH HOH . R 4 HOH C 5 305 193 HOH HOH . R 4 HOH C 6 306 11 HOH HOH . R 4 HOH C 7 307 95 HOH HOH . R 4 HOH C 8 308 12 HOH HOH . R 4 HOH C 9 309 68 HOH HOH . R 4 HOH C 10 310 1 HOH HOH . R 4 HOH C 11 311 64 HOH HOH . R 4 HOH C 12 312 117 HOH HOH . R 4 HOH C 13 313 20 HOH HOH . R 4 HOH C 14 314 126 HOH HOH . R 4 HOH C 15 315 38 HOH HOH . R 4 HOH C 16 316 88 HOH HOH . R 4 HOH C 17 317 86 HOH HOH . R 4 HOH C 18 318 29 HOH HOH . R 4 HOH C 19 319 97 HOH HOH . R 4 HOH C 20 320 48 HOH HOH . R 4 HOH C 21 321 70 HOH HOH . R 4 HOH C 22 322 141 HOH HOH . R 4 HOH C 23 323 92 HOH HOH . R 4 HOH C 24 324 61 HOH HOH . R 4 HOH C 25 325 143 HOH HOH . R 4 HOH C 26 326 49 HOH HOH . R 4 HOH C 27 327 185 HOH HOH . R 4 HOH C 28 328 195 HOH HOH . R 4 HOH C 29 329 173 HOH HOH . R 4 HOH C 30 330 98 HOH HOH . S 4 HOH D 1 301 176 HOH HOH . S 4 HOH D 2 302 139 HOH HOH . S 4 HOH D 3 303 74 HOH HOH . S 4 HOH D 4 304 146 HOH HOH . S 4 HOH D 5 305 65 HOH HOH . S 4 HOH D 6 306 118 HOH HOH . S 4 HOH D 7 307 77 HOH HOH . S 4 HOH D 8 308 149 HOH HOH . S 4 HOH D 9 309 3 HOH HOH . S 4 HOH D 10 310 25 HOH HOH . S 4 HOH D 11 311 100 HOH HOH . S 4 HOH D 12 312 168 HOH HOH . S 4 HOH D 13 313 10 HOH HOH . S 4 HOH D 14 314 189 HOH HOH . S 4 HOH D 15 315 190 HOH HOH . S 4 HOH D 16 316 82 HOH HOH . S 4 HOH D 17 317 127 HOH HOH . S 4 HOH D 18 318 62 HOH HOH . S 4 HOH D 19 319 113 HOH HOH . S 4 HOH D 20 320 172 HOH HOH . T 4 HOH E 1 301 137 HOH HOH . T 4 HOH E 2 302 112 HOH HOH . T 4 HOH E 3 303 170 HOH HOH . T 4 HOH E 4 304 42 HOH HOH . T 4 HOH E 5 305 184 HOH HOH . T 4 HOH E 6 306 31 HOH HOH . T 4 HOH E 7 307 60 HOH HOH . T 4 HOH E 8 308 5 HOH HOH . T 4 HOH E 9 309 19 HOH HOH . T 4 HOH E 10 310 45 HOH HOH . T 4 HOH E 11 311 87 HOH HOH . T 4 HOH E 12 312 37 HOH HOH . T 4 HOH E 13 313 26 HOH HOH . T 4 HOH E 14 314 120 HOH HOH . T 4 HOH E 15 315 121 HOH HOH . T 4 HOH E 16 316 46 HOH HOH . T 4 HOH E 17 317 40 HOH HOH . T 4 HOH E 18 318 47 HOH HOH . T 4 HOH E 19 319 162 HOH HOH . T 4 HOH E 20 320 75 HOH HOH . T 4 HOH E 21 321 108 HOH HOH . T 4 HOH E 22 322 171 HOH HOH . T 4 HOH E 23 323 159 HOH HOH . U 4 HOH F 1 301 136 HOH HOH . U 4 HOH F 2 302 175 HOH HOH . U 4 HOH F 3 303 142 HOH HOH . U 4 HOH F 4 304 96 HOH HOH . U 4 HOH F 5 305 63 HOH HOH . U 4 HOH F 6 306 160 HOH HOH . U 4 HOH F 7 307 84 HOH HOH . U 4 HOH F 8 308 104 HOH HOH . U 4 HOH F 9 309 169 HOH HOH . U 4 HOH F 10 310 78 HOH HOH . U 4 HOH F 11 311 161 HOH HOH . U 4 HOH F 12 312 103 HOH HOH . U 4 HOH F 13 313 191 HOH HOH . U 4 HOH F 14 314 22 HOH HOH . U 4 HOH F 15 315 67 HOH HOH . U 4 HOH F 16 316 110 HOH HOH . U 4 HOH F 17 317 24 HOH HOH . U 4 HOH F 18 318 8 HOH HOH . U 4 HOH F 19 319 156 HOH HOH . U 4 HOH F 20 320 99 HOH HOH . U 4 HOH F 21 321 134 HOH HOH . U 4 HOH F 22 322 116 HOH HOH . U 4 HOH F 23 323 53 HOH HOH . U 4 HOH F 24 324 157 HOH HOH . U 4 HOH F 25 325 165 HOH HOH . U 4 HOH F 26 326 81 HOH HOH . U 4 HOH F 27 327 44 HOH HOH . U 4 HOH F 28 328 34 HOH HOH . U 4 HOH F 29 329 85 HOH HOH . U 4 HOH F 30 330 192 HOH HOH . U 4 HOH F 31 331 66 HOH HOH . U 4 HOH F 32 332 90 HOH HOH . U 4 HOH F 33 333 187 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 2 _atom_site.Cartn_x 83.593 _atom_site.Cartn_y 19.092 _atom_site.Cartn_z 23.846 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 1066 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #