data_5WQT # _model_server_result.job_id LDmi1jtIPzNskh2qcGrWxw _model_server_result.datetime_utc '2024-11-04 09:26:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5WQT # _exptl.entry_id 5WQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5WQT _cell.length_a 47.886 _cell.length_b 86.165 _cell.length_c 112.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 86 A GLY 86 1_555 A N MSE 87 A MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C MSE 87 A MSE 87 1_555 A N LEU 88 A LEU 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C THR 104 A THR 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 105 A MSE 105 1_555 A N LEU 106 A LEU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C THR 145 A THR 145 1_555 A N MSE 146 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 146 A MSE 146 1_555 A N SER 147 A SER 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C ARG 190 A ARG 190 1_555 A N MSE 191 A MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 191 A MSE 191 1_555 A N CYS 192 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale9 B C GLY 86 B GLY 86 1_555 B N MSE 87 B MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 B C MSE 87 B MSE 87 1_555 B N LEU 88 B LEU 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C THR 104 B THR 104 1_555 B N MSE 105 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 B C MSE 105 B MSE 105 1_555 B N LEU 106 B LEU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C THR 145 B THR 145 1_555 B N MSE 146 B MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 B C MSE 146 B MSE 146 1_555 B N SER 147 B SER 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 B C ARG 190 B ARG 190 1_555 B N MSE 191 B MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C MSE 191 B MSE 191 1_555 B N CYS 192 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5WQT _atom_sites.fract_transf_matrix[1][1] 0.020883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 1 GOL GOL . D 2 GOL A 1 302 6 GOL GOL . E 2 GOL A 1 303 7 GOL GOL . F 3 CIT A 1 304 1 CIT CIT . G 3 CIT A 1 305 2 CIT CIT . H 4 HOH A 1 401 108 HOH HOH . H 4 HOH A 2 402 2 HOH HOH . H 4 HOH A 3 403 46 HOH HOH . H 4 HOH A 4 404 84 HOH HOH . H 4 HOH A 5 405 5 HOH HOH . H 4 HOH A 6 406 94 HOH HOH . H 4 HOH A 7 407 96 HOH HOH . H 4 HOH A 8 408 9 HOH HOH . H 4 HOH A 9 409 100 HOH HOH . H 4 HOH A 10 410 10 HOH HOH . H 4 HOH A 11 411 107 HOH HOH . H 4 HOH A 12 412 11 HOH HOH . H 4 HOH A 13 413 65 HOH HOH . H 4 HOH A 14 414 106 HOH HOH . H 4 HOH A 15 415 19 HOH HOH . H 4 HOH A 16 416 86 HOH HOH . H 4 HOH A 17 417 99 HOH HOH . I 4 HOH B 1 301 58 HOH HOH . I 4 HOH B 2 302 32 HOH HOH . I 4 HOH B 3 303 1 HOH HOH . I 4 HOH B 4 304 42 HOH HOH . I 4 HOH B 5 305 4 HOH HOH . I 4 HOH B 6 306 95 HOH HOH . I 4 HOH B 7 307 60 HOH HOH . I 4 HOH B 8 308 27 HOH HOH . I 4 HOH B 9 309 50 HOH HOH . I 4 HOH B 10 310 109 HOH HOH . I 4 HOH B 11 311 59 HOH HOH . I 4 HOH B 12 312 51 HOH HOH . I 4 HOH B 13 313 105 HOH HOH . I 4 HOH B 14 314 52 HOH HOH . I 4 HOH B 15 315 40 HOH HOH . I 4 HOH B 16 316 37 HOH HOH . I 4 HOH B 17 317 34 HOH HOH . I 4 HOH B 18 318 104 HOH HOH . I 4 HOH B 19 319 39 HOH HOH . I 4 HOH B 20 320 30 HOH HOH . I 4 HOH B 21 321 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . F 3 27.027 -89.63 46.786 1 91.2 ? C1 CIT 304 A 1 HETATM 2 O O1 CIT . . . F 3 25.842 -89.49 46.378 1 89.97 ? O1 CIT 304 A 1 HETATM 3 O O2 CIT . . . F 3 27.332 -90.096 47.914 1 86.22 ? O2 CIT 304 A 1 HETATM 4 C C2 CIT . . . F 3 28.15 -89.185 45.872 1 91.84 ? C2 CIT 304 A 1 HETATM 5 C C3 CIT . . . F 3 28.968 -90.332 45.243 1 92.6 ? C3 CIT 304 A 1 HETATM 6 O O7 CIT . . . F 3 28.059 -91.358 44.821 1 99.8 ? O7 CIT 304 A 1 HETATM 7 C C4 CIT . . . F 3 29.766 -89.84 44.024 1 88.24 ? C4 CIT 304 A 1 HETATM 8 C C5 CIT . . . F 3 30.162 -90.941 43.052 1 82.71 ? C5 CIT 304 A 1 HETATM 9 O O3 CIT . . . F 3 29.259 -91.631 42.528 1 78.34 ? O3 CIT 304 A 1 HETATM 10 O O4 CIT . . . F 3 31.377 -91.114 42.792 1 77.44 ? O4 CIT 304 A 1 HETATM 11 C C6 CIT . . . F 3 29.968 -90.914 46.233 1 95.57 ? C6 CIT 304 A 1 HETATM 12 O O5 CIT . . . F 3 30.43 -92.059 46.012 1 99.53 ? O5 CIT 304 A 1 HETATM 13 O O6 CIT . . . F 3 30.327 -90.249 47.234 1 94.67 ? O6 CIT 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #