data_5WR1 # _model_server_result.job_id zYgE9mvdrqjA8ngRwHEkuA _model_server_result.datetime_utc '2024-11-15 00:11:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5WR1 # _exptl.entry_id 5WR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.456 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[E-(E-16-azido-2-oxidanylidene-hexadec-3-enylidene)amino]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.85 _cell.angle_gamma 90 _cell.entry_id 5WR1 _cell.length_a 93 _cell.length_b 61.43 _cell.length_c 118.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 84 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C10 _struct_conn.ptnr2_label_comp_id 8XO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 8XO _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.669 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H30 N4 O3' _chem_comp.formula_weight 350.456 _chem_comp.id 8XO _chem_comp.mon_nstd_flag . _chem_comp.name '2-[E-(E-16-azido-2-oxidanylidene-hexadec-3-enylidene)amino]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 8XO sing 1 n n C3 C4 8XO sing 2 n n C1 C2 8XO sing 3 n n C1 C 8XO sing 4 n n C7 C 8XO sing 5 n n C7 C8 8XO sing 6 n n C4 C5 8XO sing 7 n n C5 C6 8XO sing 8 n n C8 C9 8XO sing 9 n n C9 C10 8XO sing 10 n n C6 N1 8XO sing 11 n n N1 N2 8XO doub 12 n n C10 C11 8XO sing 13 n n N2 N3 8XO doub 14 n n C11 C12 8XO sing 15 n n C12 C13 8XO doub 16 e n C13 C14 8XO sing 17 n n C14 C15 8XO sing 18 n n C14 O 8XO doub 19 n n C15 N 8XO doub 20 n n N C16 8XO sing 21 n n C16 C17 8XO sing 22 n n C17 O2 8XO doub 23 n n C17 O1 8XO sing 24 n n C15 H1 8XO sing 25 n n C13 H2 8XO sing 26 n n C12 H3 8XO sing 27 n n C16 H4 8XO sing 28 n n C16 H5 8XO sing 29 n n C11 H6 8XO sing 30 n n C11 H7 8XO sing 31 n n O1 H8 8XO sing 32 n n C10 H9 8XO sing 33 n n C10 H10 8XO sing 34 n n C9 H11 8XO sing 35 n n C9 H12 8XO sing 36 n n C8 H13 8XO sing 37 n n C8 H14 8XO sing 38 n n C7 H15 8XO sing 39 n n C7 H16 8XO sing 40 n n C H17 8XO sing 41 n n C H18 8XO sing 42 n n C1 H19 8XO sing 43 n n C1 H20 8XO sing 44 n n C2 H21 8XO sing 45 n n C2 H22 8XO sing 46 n n C3 H23 8XO sing 47 n n C3 H24 8XO sing 48 n n C4 H25 8XO sing 49 n n C4 H26 8XO sing 50 n n C5 H27 8XO sing 51 n n C5 H28 8XO sing 52 n n C6 H29 8XO sing 53 n n C6 H30 8XO sing 54 n n # _atom_sites.entry_id 5WR1 _atom_sites.fract_transf_matrix[1][1] 0.010753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002453 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8XO A 1 501 1 8XO H36 . D 3 HOH A 1 601 215 HOH HOH . D 3 HOH A 2 602 217 HOH HOH . D 3 HOH A 3 603 200 HOH HOH . D 3 HOH A 4 604 232 HOH HOH . D 3 HOH A 5 605 201 HOH HOH . D 3 HOH A 6 606 195 HOH HOH . D 3 HOH A 7 607 199 HOH HOH . D 3 HOH A 8 608 226 HOH HOH . D 3 HOH A 9 609 6 HOH HOH . D 3 HOH A 10 610 212 HOH HOH . D 3 HOH A 11 611 214 HOH HOH . D 3 HOH A 12 612 207 HOH HOH . D 3 HOH A 13 613 13 HOH HOH . D 3 HOH A 14 614 2 HOH HOH . D 3 HOH A 15 615 1 HOH HOH . D 3 HOH A 16 616 209 HOH HOH . D 3 HOH A 17 617 218 HOH HOH . D 3 HOH A 18 618 233 HOH HOH . D 3 HOH A 19 619 203 HOH HOH . D 3 HOH A 20 620 219 HOH HOH . D 3 HOH A 21 621 50 HOH HOH . D 3 HOH A 22 622 210 HOH HOH . D 3 HOH A 23 623 213 HOH HOH . D 3 HOH A 24 624 205 HOH HOH . E 3 HOH B 1 501 243 HOH HOH . E 3 HOH B 2 502 198 HOH HOH . E 3 HOH B 3 503 248 HOH HOH . E 3 HOH B 4 504 247 HOH HOH . E 3 HOH B 5 505 193 HOH HOH . E 3 HOH B 6 506 246 HOH HOH . E 3 HOH B 7 507 241 HOH HOH . E 3 HOH B 8 508 9 HOH HOH . E 3 HOH B 9 509 16 HOH HOH . E 3 HOH B 10 510 18 HOH HOH . E 3 HOH B 11 511 251 HOH HOH . E 3 HOH B 12 512 53 HOH HOH . E 3 HOH B 13 513 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 8XO . . . C 2 19.815 18.031 16.677 1 70.75 ? C15 8XO 501 A 1 HETATM 2 C C14 8XO . . . C 2 19.256 16.656 16.554 1 70.71 ? C14 8XO 501 A 1 HETATM 3 C C13 8XO . . . C 2 18.574 16.26 15.287 1 69.8 ? C13 8XO 501 A 1 HETATM 4 C C12 8XO . . . C 2 18.385 17.194 14.334 1 70.61 ? C12 8XO 501 A 1 HETATM 5 C C16 8XO . . . C 2 20.654 19.876 17.863 1 70.84 ? C16 8XO 501 A 1 HETATM 6 C C11 8XO . . . C 2 17.691 16.985 12.974 1 70.54 ? C11 8XO 501 A 1 HETATM 7 O O2 8XO . . . C 2 21.039 21.528 19.487 1 70.95 ? O2 8XO 501 A 1 HETATM 8 C C17 8XO . . . C 2 20.778 20.309 19.305 1 70.92 ? C17 8XO 501 A 1 HETATM 9 O O1 8XO . . . C 2 20.643 19.45 20.242 1 70.95 ? O1 8XO 501 A 1 HETATM 10 N N 8XO . . . C 2 20.166 18.497 17.789 1 70.81 ? N 8XO 501 A 1 HETATM 11 O O 8XO . . . C 2 19.302 15.921 17.564 1 70.75 ? O 8XO 501 A 1 HETATM 12 C C10 8XO . . . C 2 18.238 17.987 11.913 1 70.51 ? C10 8XO 501 A 1 HETATM 13 C C9 8XO . . . C 2 18.252 17.377 10.502 1 69.88 ? C9 8XO 501 A 1 HETATM 14 C C8 8XO . . . C 2 17.385 18.141 9.501 1 69.51 ? C8 8XO 501 A 1 HETATM 15 C C7 8XO . . . C 2 18.023 19.452 8.98 1 69.15 ? C7 8XO 501 A 1 HETATM 16 C C 8XO . . . C 2 17.261 20.708 9.428 1 68.52 ? C 8XO 501 A 1 HETATM 17 C C1 8XO . . . C 2 17.178 21.862 8.431 1 68.09 ? C1 8XO 501 A 1 HETATM 18 C C2 8XO . . . C 2 15.829 22.587 8.635 1 68.69 ? C2 8XO 501 A 1 HETATM 19 C C3 8XO . . . C 2 15.822 24.094 8.292 1 68.89 ? C3 8XO 501 A 1 HETATM 20 C C4 8XO . . . C 2 14.874 24.897 9.218 1 69.35 ? C4 8XO 501 A 1 HETATM 21 C C5 8XO . . . C 2 15.259 26.379 9.429 1 69.98 ? C5 8XO 501 A 1 HETATM 22 C C6 8XO . . . C 2 14.466 27.072 10.556 1 70.39 ? C6 8XO 501 A 1 HETATM 23 N N1 8XO . . . C 2 15.275 28.242 10.992 1 70.67 ? N1 8XO 501 A 1 HETATM 24 N N2 8XO . . . C 2 15.281 28.587 12.208 1 70.73 ? N2 8XO 501 A 1 HETATM 25 N N3 8XO . . . C 2 15.367 29.001 13.292 1 70.79 ? N3 8XO 501 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #