data_5WRF
#
_model_server_result.job_id            H7B9sMC2PqTizz9FOoc_qA 
_model_server_result.datetime_utc      '2024-10-10 09:29:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5wrf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    5WRF 
#
_exptl.entry_id    5WRF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.53 
_cell.angle_gamma         90 
_cell.entry_id            5WRF 
_cell.length_a            97.801 
_cell.length_b            135.75 
_cell.length_c            142.74 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5WRF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5WRF 
_atom_sites.fract_transf_matrix[1][1]    0.010225 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001352 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007366 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 EDO A 1 201 1 EDO EDO . 
N 3 HOH A 1 301 88 HOH HOH . 
N 3 HOH A 2 302 91 HOH HOH . 
N 3 HOH A 3 303 89 HOH HOH . 
N 3 HOH A 4 304 18 HOH HOH . 
N 3 HOH A 5 305 23 HOH HOH . 
N 3 HOH A 6 306 3 HOH HOH . 
N 3 HOH A 7 307 15 HOH HOH . 
N 3 HOH A 8 308 101 HOH HOH . 
N 3 HOH A 9 309 96 HOH HOH . 
N 3 HOH A 10 310 16 HOH HOH . 
N 3 HOH A 11 311 6 HOH HOH . 
N 3 HOH A 12 312 8 HOH HOH . 
N 3 HOH A 13 313 10 HOH HOH . 
N 3 HOH A 14 314 2 HOH HOH . 
N 3 HOH A 15 315 100 HOH HOH . 
N 3 HOH A 16 316 13 HOH HOH . 
N 3 HOH A 17 317 95 HOH HOH . 
N 3 HOH A 18 318 97 HOH HOH . 
N 3 HOH A 19 319 98 HOH HOH . 
N 3 HOH A 20 320 12 HOH HOH . 
N 3 HOH A 21 321 5 HOH HOH . 
N 3 HOH A 22 322 20 HOH HOH . 
N 3 HOH A 23 323 93 HOH HOH . 
N 3 HOH A 24 324 119 HOH HOH . 
N 3 HOH A 25 325 92 HOH HOH . 
N 3 HOH A 26 326 11 HOH HOH . 
N 3 HOH A 27 327 22 HOH HOH . 
N 3 HOH A 28 328 94 HOH HOH . 
N 3 HOH A 29 329 99 HOH HOH . 
N 3 HOH A 30 330 225 HOH HOH . 
N 3 HOH A 31 331 4 HOH HOH . 
N 3 HOH A 32 332 1 HOH HOH . 
N 3 HOH A 33 333 7 HOH HOH . 
N 3 HOH A 34 334 234 HOH HOH . 
O 3 HOH B 1 201 14 HOH HOH . 
O 3 HOH B 2 202 111 HOH HOH . 
O 3 HOH B 3 203 114 HOH HOH . 
O 3 HOH B 4 204 26 HOH HOH . 
O 3 HOH B 5 205 29 HOH HOH . 
O 3 HOH B 6 206 232 HOH HOH . 
O 3 HOH B 7 207 32 HOH HOH . 
O 3 HOH B 8 208 212 HOH HOH . 
O 3 HOH B 9 209 27 HOH HOH . 
O 3 HOH B 10 210 25 HOH HOH . 
O 3 HOH B 11 211 121 HOH HOH . 
O 3 HOH B 12 212 120 HOH HOH . 
O 3 HOH B 13 213 110 HOH HOH . 
O 3 HOH B 14 214 117 HOH HOH . 
O 3 HOH B 15 215 31 HOH HOH . 
O 3 HOH B 16 216 109 HOH HOH . 
O 3 HOH B 17 217 113 HOH HOH . 
O 3 HOH B 18 218 30 HOH HOH . 
O 3 HOH B 19 219 33 HOH HOH . 
O 3 HOH B 20 220 128 HOH HOH . 
O 3 HOH B 21 221 233 HOH HOH . 
O 3 HOH B 22 222 122 HOH HOH . 
O 3 HOH B 23 223 222 HOH HOH . 
P 3 HOH C 1 201 35 HOH HOH . 
P 3 HOH C 2 202 42 HOH HOH . 
P 3 HOH C 3 203 43 HOH HOH . 
P 3 HOH C 4 204 36 HOH HOH . 
P 3 HOH C 5 205 127 HOH HOH . 
P 3 HOH C 6 206 19 HOH HOH . 
P 3 HOH C 7 207 131 HOH HOH . 
P 3 HOH C 8 208 171 HOH HOH . 
P 3 HOH C 9 209 40 HOH HOH . 
P 3 HOH C 10 210 130 HOH HOH . 
P 3 HOH C 11 211 126 HOH HOH . 
P 3 HOH C 12 212 41 HOH HOH . 
P 3 HOH C 13 213 135 HOH HOH . 
P 3 HOH C 14 214 39 HOH HOH . 
P 3 HOH C 15 215 44 HOH HOH . 
P 3 HOH C 16 216 37 HOH HOH . 
P 3 HOH C 17 217 125 HOH HOH . 
P 3 HOH C 18 218 139 HOH HOH . 
P 3 HOH C 19 219 34 HOH HOH . 
P 3 HOH C 20 220 124 HOH HOH . 
P 3 HOH C 21 221 102 HOH HOH . 
P 3 HOH C 22 222 134 HOH HOH . 
P 3 HOH C 23 223 136 HOH HOH . 
P 3 HOH C 24 224 17 HOH HOH . 
P 3 HOH C 25 225 38 HOH HOH . 
P 3 HOH C 26 226 138 HOH HOH . 
P 3 HOH C 27 227 137 HOH HOH . 
Q 3 HOH D 1 201 52 HOH HOH . 
Q 3 HOH D 2 202 141 HOH HOH . 
Q 3 HOH D 3 203 140 HOH HOH . 
Q 3 HOH D 4 204 144 HOH HOH . 
Q 3 HOH D 5 205 142 HOH HOH . 
Q 3 HOH D 6 206 149 HOH HOH . 
Q 3 HOH D 7 207 51 HOH HOH . 
Q 3 HOH D 8 208 146 HOH HOH . 
Q 3 HOH D 9 209 49 HOH HOH . 
Q 3 HOH D 10 210 143 HOH HOH . 
Q 3 HOH D 11 211 87 HOH HOH . 
Q 3 HOH D 12 212 45 HOH HOH . 
Q 3 HOH D 13 213 46 HOH HOH . 
Q 3 HOH D 14 214 50 HOH HOH . 
Q 3 HOH D 15 215 147 HOH HOH . 
Q 3 HOH D 16 216 106 HOH HOH . 
Q 3 HOH D 17 217 227 HOH HOH . 
R 3 HOH E 1 201 159 HOH HOH . 
R 3 HOH E 2 202 230 HOH HOH . 
R 3 HOH E 3 203 58 HOH HOH . 
R 3 HOH E 4 204 54 HOH HOH . 
R 3 HOH E 5 205 57 HOH HOH . 
R 3 HOH E 6 206 151 HOH HOH . 
R 3 HOH E 7 207 160 HOH HOH . 
R 3 HOH E 8 208 211 HOH HOH . 
R 3 HOH E 9 209 168 HOH HOH . 
R 3 HOH E 10 210 53 HOH HOH . 
R 3 HOH E 11 211 150 HOH HOH . 
R 3 HOH E 12 212 158 HOH HOH . 
R 3 HOH E 13 213 153 HOH HOH . 
R 3 HOH E 14 214 157 HOH HOH . 
R 3 HOH E 15 215 152 HOH HOH . 
R 3 HOH E 16 216 156 HOH HOH . 
S 3 HOH F 1 201 173 HOH HOH . 
S 3 HOH F 2 202 161 HOH HOH . 
S 3 HOH F 3 203 63 HOH HOH . 
S 3 HOH F 4 204 167 HOH HOH . 
S 3 HOH F 5 205 165 HOH HOH . 
S 3 HOH F 6 206 164 HOH HOH . 
S 3 HOH F 7 207 163 HOH HOH . 
S 3 HOH F 8 208 224 HOH HOH . 
S 3 HOH F 9 209 59 HOH HOH . 
S 3 HOH F 10 210 162 HOH HOH . 
S 3 HOH F 11 211 236 HOH HOH . 
S 3 HOH F 12 212 223 HOH HOH . 
S 3 HOH F 13 213 178 HOH HOH . 
S 3 HOH F 14 214 55 HOH HOH . 
S 3 HOH F 15 215 62 HOH HOH . 
S 3 HOH F 16 216 60 HOH HOH . 
S 3 HOH F 17 217 132 HOH HOH . 
S 3 HOH F 18 218 169 HOH HOH . 
S 3 HOH F 19 219 170 HOH HOH . 
T 3 HOH G 1 201 56 HOH HOH . 
T 3 HOH G 2 202 177 HOH HOH . 
T 3 HOH G 3 203 66 HOH HOH . 
T 3 HOH G 4 204 175 HOH HOH . 
T 3 HOH G 5 205 176 HOH HOH . 
T 3 HOH G 6 206 172 HOH HOH . 
T 3 HOH G 7 207 154 HOH HOH . 
T 3 HOH G 8 208 166 HOH HOH . 
T 3 HOH G 9 209 65 HOH HOH . 
T 3 HOH G 10 210 174 HOH HOH . 
T 3 HOH G 11 211 61 HOH HOH . 
U 3 HOH H 1 201 184 HOH HOH . 
U 3 HOH H 2 202 183 HOH HOH . 
U 3 HOH H 3 203 181 HOH HOH . 
U 3 HOH H 4 204 216 HOH HOH . 
U 3 HOH H 5 205 67 HOH HOH . 
U 3 HOH H 6 206 218 HOH HOH . 
U 3 HOH H 7 207 182 HOH HOH . 
U 3 HOH H 8 208 179 HOH HOH . 
U 3 HOH H 9 209 180 HOH HOH . 
V 3 HOH I 1 201 185 HOH HOH . 
V 3 HOH I 2 202 187 HOH HOH . 
V 3 HOH I 3 203 71 HOH HOH . 
V 3 HOH I 4 204 68 HOH HOH . 
V 3 HOH I 5 205 226 HOH HOH . 
V 3 HOH I 6 206 103 HOH HOH . 
W 3 HOH J 1 201 190 HOH HOH . 
W 3 HOH J 2 202 237 HOH HOH . 
W 3 HOH J 3 203 74 HOH HOH . 
W 3 HOH J 4 204 192 HOH HOH . 
W 3 HOH J 5 205 75 HOH HOH . 
W 3 HOH J 6 206 202 HOH HOH . 
W 3 HOH J 7 207 196 HOH HOH . 
W 3 HOH J 8 208 200 HOH HOH . 
W 3 HOH J 9 209 193 HOH HOH . 
W 3 HOH J 10 210 73 HOH HOH . 
W 3 HOH J 11 211 195 HOH HOH . 
W 3 HOH J 12 212 197 HOH HOH . 
W 3 HOH J 13 213 199 HOH HOH . 
W 3 HOH J 14 214 191 HOH HOH . 
W 3 HOH J 15 215 198 HOH HOH . 
W 3 HOH J 16 216 203 HOH HOH . 
W 3 HOH J 17 217 188 HOH HOH . 
X 3 HOH K 1 201 79 HOH HOH . 
X 3 HOH K 2 202 207 HOH HOH . 
X 3 HOH K 3 203 210 HOH HOH . 
X 3 HOH K 4 204 77 HOH HOH . 
X 3 HOH K 5 205 209 HOH HOH . 
X 3 HOH K 6 206 76 HOH HOH . 
X 3 HOH K 7 207 208 HOH HOH . 
X 3 HOH K 8 208 213 HOH HOH . 
X 3 HOH K 9 209 204 HOH HOH . 
X 3 HOH K 10 210 81 HOH HOH . 
X 3 HOH K 11 211 80 HOH HOH . 
X 3 HOH K 12 212 189 HOH HOH . 
X 3 HOH K 13 213 78 HOH HOH . 
X 3 HOH K 14 214 206 HOH HOH . 
Y 3 HOH L 1 201 219 HOH HOH . 
Y 3 HOH L 2 202 85 HOH HOH . 
Y 3 HOH L 3 203 83 HOH HOH . 
Y 3 HOH L 4 204 214 HOH HOH . 
Y 3 HOH L 5 205 82 HOH HOH . 
Y 3 HOH L 6 206 104 HOH HOH . 
Y 3 HOH L 7 207 221 HOH HOH . 
Y 3 HOH L 8 208 220 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 2 -40.037 13.986 17.456 1 45.94 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . M 2 -41.274 14.611 17.763 1 47.49 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . M 2 -39.127 13.852 18.679 1 46.88 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . M 2 -39.386 12.747 19.566 1 38.59 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#