data_5WRS # _model_server_result.job_id V0QHOOFtRhjOVBAj_H04Xw _model_server_result.datetime_utc '2024-11-23 22:05:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wrs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":604}' # _entry.id 5WRS # _exptl.entry_id 5WRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5WRS _cell.length_a 157.202 _cell.length_b 157.202 _cell.length_c 144.802 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 601 NAG 2 n C NAG 2 C 2 NAG A 602 NAG 2 n D NAG 1 D 1 NAG B 601 NAG 2 n D NAG 2 D 2 NAG B 602 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 121 A CYS 209 1_555 A SG CYS 231 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 123 A CYS 211 1_555 A SG CYS 235 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 226 A CYS 314 1_555 A SG CYS 242 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 A SG CYS 290 A CYS 378 1_555 A SG CYS 364 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 A SG CYS 365 A CYS 453 1_555 A SG CYS 424 A CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf6 B SG CYS 121 B CYS 209 1_555 B SG CYS 231 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf7 B SG CYS 123 B CYS 211 1_555 B SG CYS 235 B CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf8 B SG CYS 226 B CYS 314 1_555 B SG CYS 242 B CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 B SG CYS 290 B CYS 378 1_555 B SG CYS 364 B CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf10 B SG CYS 365 B CYS 453 1_555 B SG CYS 424 B CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? covale ? covale1 A ND2 ASN 199 A ASN 287 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 A ND2 ASN 300 A ASN 388 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 B ND2 ASN 199 B ASN 287 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 B ND2 ASN 300 B ASN 388 1_555 G C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5WRS _atom_sites.fract_transf_matrix[1][1] 0.006361 _atom_sites.fract_transf_matrix[1][2] 0.003673 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 603 607 NAG NAG . F 4 ATP A 1 604 701 ATP ATP . G 3 NAG B 1 603 607 NAG NAG . H 4 ATP B 1 604 701 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 4 -6.628 52.493 11.362 1 104.65 ? PG ATP 604 B 1 HETATM 2 O O1G ATP . . . H 4 -6.428 53.234 10.062 1 105.09 ? O1G ATP 604 B 1 HETATM 3 O O2G ATP . . . H 4 -5.352 51.963 11.969 1 97.94 ? O2G ATP 604 B 1 HETATM 4 O O3G ATP . . . H 4 -7.774 51.51 11.344 1 109.97 ? O3G ATP 604 B 1 HETATM 5 P PB ATP . . . H 4 -6.564 55.14 12.29 1 127.46 ? PB ATP 604 B 1 HETATM 6 O O1B ATP . . . H 4 -7.379 55.866 11.245 1 134.01 ? O1B ATP 604 B 1 HETATM 7 O O2B ATP . . . H 4 -5.058 55.104 12.191 1 119.62 ? O2B ATP 604 B 1 HETATM 8 O O3B ATP . . . H 4 -7.104 53.627 12.399 1 122.1 ? O3B ATP 604 B 1 HETATM 9 P PA ATP . . . H 4 -8.356 55.295 14.403 1 100.04 ? PA ATP 604 B 1 HETATM 10 O O1A ATP . . . H 4 -9.351 54.988 13.309 1 104.59 ? O1A ATP 604 B 1 HETATM 11 O O2A ATP . . . H 4 -8.02 54.26 15.449 1 100.12 ? O2A ATP 604 B 1 HETATM 12 O O3A ATP . . . H 4 -6.969 55.741 13.725 1 113.33 ? O3A ATP 604 B 1 HETATM 13 O O5' ATP . . . H 4 -8.848 56.64 15.13 1 98.97 ? O5' ATP 604 B 1 HETATM 14 C C5' ATP . . . H 4 -8.66 57.902 14.5 1 90.81 ? C5' ATP 604 B 1 HETATM 15 C C4' ATP . . . H 4 -9.629 58.882 15.143 1 79.76 ? C4' ATP 604 B 1 HETATM 16 O O4' ATP . . . H 4 -9.147 59.25 16.437 1 74.05 ? O4' ATP 604 B 1 HETATM 17 C C3' ATP . . . H 4 -9.771 60.163 14.34 1 77.64 ? C3' ATP 604 B 1 HETATM 18 O O3' ATP . . . H 4 -10.929 60.121 13.501 1 78.07 ? O3' ATP 604 B 1 HETATM 19 C C2' ATP . . . H 4 -9.898 61.243 15.392 1 76.59 ? C2' ATP 604 B 1 HETATM 20 O O2' ATP . . . H 4 -11.28 61.531 15.631 1 72.24 ? O2' ATP 604 B 1 HETATM 21 C C1' ATP . . . H 4 -9.282 60.656 16.65 1 76.69 ? C1' ATP 604 B 1 HETATM 22 N N9 ATP . . . H 4 -7.93 61.241 16.821 1 76.23 ? N9 ATP 604 B 1 HETATM 23 C C8 ATP . . . H 4 -6.767 60.561 16.809 1 76.07 ? C8 ATP 604 B 1 HETATM 24 N N7 ATP . . . H 4 -5.709 61.394 16.991 1 67.8 ? N7 ATP 604 B 1 HETATM 25 C C5 ATP . . . H 4 -6.198 62.641 17.125 1 73.77 ? C5 ATP 604 B 1 HETATM 26 C C6 ATP . . . H 4 -5.636 63.996 17.344 1 67.51 ? C6 ATP 604 B 1 HETATM 27 N N6 ATP . . . H 4 -4.302 64.19 17.46 1 57.6 ? N6 ATP 604 B 1 HETATM 28 N N1 ATP . . . H 4 -6.498 65.034 17.425 1 71.56 ? N1 ATP 604 B 1 HETATM 29 C C2 ATP . . . H 4 -7.826 64.861 17.312 1 67.41 ? C2 ATP 604 B 1 HETATM 30 N N3 ATP . . . H 4 -8.404 63.663 17.112 1 72.06 ? N3 ATP 604 B 1 HETATM 31 C C4 ATP . . . H 4 -7.661 62.535 17.014 1 76.58 ? C4 ATP 604 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #