data_5WRU # _model_server_result.job_id B561v4mhA97QKAtKUOPFlw _model_server_result.datetime_utc '2025-07-31 07:54:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5wru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5WRU # _exptl.entry_id 5WRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.95 _cell.angle_gamma 90 _cell.entry_id 5WRU _cell.length_a 253.345 _cell.length_b 85.22 _cell.length_c 108.445 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5WRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F 1 1 C,D,G 2 1 E 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 80 A TYR 80 1_555 A N MSE 81 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 81 A MSE 81 1_555 A N LEU 82 A LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ASN 124 A ASN 124 1_555 A N MSE 125 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 125 A MSE 125 1_555 A N ILE 126 A ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale5 A C LYS 276 A LYS 276 1_555 A N MSE 277 A MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 277 A MSE 277 1_555 A N ALA 278 A ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ILE 300 A ILE 300 1_555 A N MSE 301 A MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 301 A MSE 301 1_555 A N LYS 302 A LYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 B C TYR 80 B TYR 80 1_555 B N MSE 81 B MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 B C MSE 81 B MSE 81 1_555 B N LEU 82 B LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C ASN 124 B ASN 124 1_555 B N MSE 125 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 125 B MSE 125 1_555 B N ILE 126 B ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale13 B NH2 ARG 158 B ARG 158 1_555 F O3 PO4 . B PO4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale14 B C LYS 276 B LYS 276 1_555 B N MSE 277 B MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 B C MSE 277 B MSE 277 1_555 B N ALA 278 B ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B C ILE 300 B ILE 300 1_555 B N MSE 301 B MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C MSE 301 B MSE 301 1_555 B N LYS 302 B LYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 C C TYR 80 C TYR 80 1_555 C N MSE 81 C MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 C C MSE 81 C MSE 81 1_555 C N LEU 82 C LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 C C ASN 124 C ASN 124 1_555 C N MSE 125 C MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 C C MSE 125 C MSE 125 1_555 C N ILE 126 C ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale22 C C LYS 276 C LYS 276 1_555 C N MSE 277 C MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 C C MSE 277 C MSE 277 1_555 C N ALA 278 C ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 C C ILE 300 C ILE 300 1_555 C N MSE 301 C MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 C C MSE 301 C MSE 301 1_555 C N LYS 302 C LYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale26 D C TYR 80 D TYR 80 1_555 D N MSE 81 D MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale27 D C MSE 81 D MSE 81 1_555 D N LEU 82 D LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale28 D C ASN 124 D ASN 124 1_555 D N MSE 125 D MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale29 D C MSE 125 D MSE 125 1_555 D N ILE 126 D ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 D C LYS 276 D LYS 276 1_555 D N MSE 277 D MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale31 D C MSE 277 D MSE 277 1_555 D N ALA 278 D ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 D C ILE 300 D ILE 300 1_555 D N MSE 301 D MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale33 D C MSE 301 D MSE 301 1_555 D N LYS 302 D LYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale34 E C TYR 80 E TYR 80 1_555 E N MSE 81 E MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale35 E C MSE 81 E MSE 81 1_555 E N LEU 82 E LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale36 E C ASN 124 E ASN 124 1_555 E N MSE 125 E MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale37 E C MSE 125 E MSE 125 1_555 E N ILE 126 E ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale38 E C LYS 276 E LYS 276 1_555 E N MSE 277 E MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale39 E C MSE 277 E MSE 277 1_555 E N ALA 278 E ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale40 E C ILE 300 E ILE 300 1_555 E N MSE 301 E MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale41 E C MSE 301 E MSE 301 1_555 E N LYS 302 E LYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 258 n n P O2 PO4 sing 259 n n P O3 PO4 sing 260 n n P O4 PO4 sing 261 n n # _atom_sites.entry_id 5WRU _atom_sites.fract_transf_matrix[1][1] 0.003947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001837 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PO4 B 1 401 2 PO4 PO4 . G 2 PO4 C 1 401 1 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 2 -55.876 12.694 40.417 1 55.5 ? P PO4 401 B 1 HETATM 2 O O1 PO4 . . . F 2 -54.486 12.811 39.861 1 47.22 ? O1 PO4 401 B 1 HETATM 3 O O2 PO4 . . . F 2 -56.819 12.199 39.354 1 51.41 ? O2 PO4 401 B 1 HETATM 4 O O3 PO4 . . . F 2 -55.856 11.724 41.57 1 48.54 ? O3 PO4 401 B 1 HETATM 5 O O4 PO4 . . . F 2 -56.327 14.048 40.891 1 52.11 ? O4 PO4 401 B 1 # _model_server_stats.io_time_ms 120 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 457 _model_server_stats.encode_time_ms 29 _model_server_stats.element_count 5 #